HHsearch 1.5 NAME c2mhhA_ FAM FILE c2mhhA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2mhhA_.a3m DATE Sat Oct 11 08:29:06 2014 LENG 96 match states, 96 columns in multiple alignment FILT 11 out of 15 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.5 EVD 0.3961 -1.0868 SEQ >ss_dssp CCSCSSCCHHHHHHHHHHHHHHHHHTTCTTCCCSBCHHHHHHHHHTTTCCTTHHHHHHHTTCSSSCCCBCHHHHHHHHHHHHHHHHHHHHHHCCCC >sa_dssp EEEEEEEEEDCDDCEDBCCBCEBCDECDEEECEDBDCDCADEBADEEECDEDEADEDBCEBDEEEEEEBCDECCEDBDEDBDDEBCECBEEDDEEE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 935888888788788699999999740357666447899999999618761889999999720001201899999999999999999897785379 >Consensus kGyxkxxxklxlkkekixdiqxaLqxxdxxxdxxlxFeexrxxLkxxGhadxeIxaxFxkyDxDGdrxLdexEqxkmxxdlexerxxLxxeixxlx >c2mhhA_ GGLVPRGSHMASKRDKIADIQEALAHADANADQHLDFDEWRQELKCRGHADADIEAVFAKYDVDGDRVLDAEEQMKMAHDLEGQKSDLNNQLAELE >UniRef50_C0KJK2(645-738:910) Polycystin-2 delta7 variant n=1 Tax=Mus musculus RepID=C0KJK2_MOUSE E=8e-29 s/c=1.35 id=39% cov=94% --LIRKGCQKALVKLKLKrNTVDAISESLRQGGGKLNFDELRQDLKGEGHTDAEIEAIFTKYDQDGDQELTEREHQQMRDDLEKEREDLDLE----- >UniRef50_UPI0000F2AEDB(550-635:735) PREDICTED: similar to polycystic kidney disease 2-like protein n=1 Tax=Monodelphis domestica RepID=UPI0000F2AEDB E=1e-24 s/c=1.31 id=38% cov=83% ------------KKERVSDVQRVL----GGGERQLQFEDFTNTLRELGHAKHEItevTAAFARFDRDGNRVLDEEEQERMRQDLEEERVALSAEIQTL- >UniRef50_C4QIX5(512-581:675) Expressed protein n=1 Tax=Schistosoma mansoni RepID=C4QIX5_SCHMA E=8e-18 s/c=1.30 id=35% cov=53% --------------------------------EKLPYEDYRKALKSHGYSEPEIFTTFMKYDEDGDNNLDLTEQQQLAYEID-------------- >UniRef50_Q5C623(2-37:136) SJCHGC08918 protein (Fragment) n=1 Tax=Schistosoma japonicum RepID=Q5C623_SCHJA E=3e-05 s/c=1.37 id=44% cov=38% -----------------------------------------------GYSDPEILSTFLKYDEDGDNNLDLVEQQQLAYEIE-------------- >UniRef50_C0KJK2(548-833:910) Polycystin-2 delta7 variant n=1 Tax=Mus musculus RepID=C0KJK2_MOUSE E=6e-74 s/c=0.24 id=40% cov=97% KGCQKALVKLKLKRNTVDAISESLRQGGGK----LNFDELRQDLKGEGHTDAEIEAIFTKYDQDGDQELTEREHQQMRDDLEKEREDLDLEHSSLP >UniRef50_UPI0001924BA1(312-428:428) PREDICTED: similar to predicted protein, partial n=1 Tax=Hydra magnipapillata RepID=UPI0001924BA1 E=7e-48 s/c=0.61 id=54% cov=48% KGYDKMMSKLKFKREKIVDIQKALQTADANQDNKLDFEEWRAELK--------------------------------------------------- >UniRef50_UPI0001924D45(469-760:815) PREDICTED: similar to predicted protein n=2 Tax=Hydra magnipapillata RepID=UPI0001924D45 E=1e-112 s/c=0.50 id=51% cov=101% KGYDKMMSNLSFKREKIVDIQKALQTADVNHDNMLDFEEWRAQLKLRGHADLEIEAVFTQYDLDGDRVLNEIEQQKMHDDLDIKMEELEDEIEEVR >UniRef50_UPI0001926824(394-685:696) PREDICTED: similar to predicted protein n=2 Tax=Hydra magnipapillata RepID=UPI0001926824 E=1e-107 s/c=0.47 id=48% cov=100% RGYNNMMTKLKLKKENIVNIQEALQFSDKNKDKTVDFEEWRLELKKRGHSDVEIAAVFSKYDNDGDRILNEEEISKMNKDLETQKNQLNDEIEDV- >UniRef50_Q9P0L9(586-679:805) Polycystic kidney disease 2-like 1 protein n=36 Tax=Metazoa RepID=PK2L1_HUMAN E=6e-15 s/c=0.76 id=33% cov=96% QGYNKTLLRLRLRKERVSDVQKVLQGG----EQEIQFEDFTNTLRELGHAEHEItelTATFTKFDRDGNRILDEKEQEKMRQDLEEERVALNTEIEKL- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 2844 * * 985 * * * * 2263 2765 * * * * * 1 0 * * * * * * 2410 0 0 G 2 * * * * * 0 * * * * * * * * * * * * * * 2 0 * * * * * * 2410 0 0 L 3 * 2808 * * * * * * * 1755 * * * * * * * * * 834 3 0 * * * * * * 2873 0 0 V 4 * * 2530 3429 * * * 2380 * * * 1761 * 2808 * * * 3264 * * 4 0 * * * * * * 2873 0 0 P 5 * * * * * * * * 763 * * 3127 3264 * 2380 * * * * * 5 0 * * * * * * 2873 0 0 R 6 2808 * * * * * * * 2380 * 1394 * * * 3264 * 2470 * * * 6 0 * * * * * * 2873 0 0 G 7 * * * * * 1755 * * * 1629 1798 * * * * * * 3429 * * 7 0 * * * * * * 2873 0 0 S 8 * 2380 * * * 3429 * * * 2470 * * * * * 1851 3127 2808 * * 8 0 * * * * * * 2873 0 0 H 9 * * * * * * 3264 * 1223 * * 3400 * 2380 2470 * * * * * 9 0 * * * * * * 2873 0 0 M 10 * * * * * * * 3429 2380 711 3264 * * * * * * * * * 10 0 * * * * * * 2873 0 0 A 11 1755 * * * * * * * 1575 * * 3429 * * 2470 3400 * * * * 11 0 * * * * * * 2873 0 0 S 12 * * * * 1911 * * * * 667 * * * * * 3264 * * * * 12 0 * * * * * * 2873 0 0 K 13 * * * * * * * * 543 * * * * * 2970 * * 2425 * * 13 0 * * * * * * 2760 0 0 R 14 * * * * * * * * 869 * * * * * 1144 * * * * * 14 0 * * * * * * 2760 0 0 D 15 * * 2730 928 * * * * * 2425 * 2863 * * * * * * * * 15 0 * * * * * * 2760 0 0 K 16 * * * * * * * * 996 * * 3150 * * 2008 * 2863 * * * 16 0 * * * * * * 2760 0 0 I 17 * * * * * * * 1225 * 2425 * * * * * * * 1373 * * 17 0 * * * * * * 2760 0 0 A 18 2730 * 2863 * * * * * 2425 * * * * * * 2008 * 1852 * * 18 297 2425 * 0 * * * 2760 1000 0 D 19 2863 * 827 * * * * * * * * 1743 * * * * * * * * 19 0 * * * * * * 2760 0 0 I 20 * * * * * * * 823 * * * * * * * * 2425 2008 * * 20 0 * * * * * * 2760 0 0 Q 21 * * * * * * * * * * * * * 564 * 2863 * 2425 * * 21 0 * * * * * * 2760 0 0 E 22 * * 2425 1319 * * * * 1776 * * * * * 3046 * * * * * 22 0 * * * * * * 2760 0 0 A 23 704 * * * * * * * * * * * * * * 2863 * 2008 * * 23 0 * * * * * * 2760 0 0 L 24 * * * * * * * 2425 * 297 * * * * * * * * * * 24 186 * 3046 * * * * 2760 0 0 A 25 2344 * * * * * * * * * * * * 1095 2808 2380 * * * * 25 0 * * * * * 0 2873 0 1000 H 26 * * * 2380 3127 2470 2344 * * * * * * 2808 * * 2530 * * * 26 0 * * * * * 0 2873 0 1000 A 27 1434 * * * * 1629 * * * * * * * * * 1706 * * * * 27 287 * 2470 * * * 0 2873 0 1000 D 28 * * 746 * * 2487 * * * 2149 * * * * * * * * * * 28 0 * * * * 1000 1000 2498 0 1145 A 29 2033 * * * * 1559 * * 3002 * * * * * 2354 * * 3382 * * 29 0 * * * * * 0 2649 0 1000 N 30 * * * * * 2384 * * 2759 * * 1105 * 2354 * * * * * * 30 231 * 2759 * * * 0 2649 0 1000 A 31 2360 * * * * 1130 3198 * 2806 * * * * 3377 * * * * * * 31 0 * * * * 1000 1000 2426 0 1489 D 32 * * 1024 1835 * 2132 * * * * * * * * * * * * * * 32 0 * * * * * 0 2556 0 1000 Q 33 * * * 2580 * 3020 * * 3116 * * 2630 * 1749 2889 * * * * * 33 0 * * * * * 0 2654 0 1000 H 34 * * * 2752 * * 2745 * 1469 * 3461 * * 2889 * * 3116 * * * 34 0 * * * * 0 * 2654 0 1000 L 35 * * * * * * * 3195 * 364 * * * * * * * 3137 * * 35 0 * * * * * * 2449 0 0 D 36 * * 1332 * * * * * * * * 2039 2885 2157 * * * * * * 36 0 * * * * * * 2449 0 0 F 37 * * * * 210 * * * * * * * * * * * * * * 2885 37 0 * * * * * * 2449 0 0 D 38 * * 1323 736 * * * * * * * * * * * * * * * * 38 0 * * * * * * 2449 0 0 E 39 * * 1476 643 * * * * * * * * * * * * * * * * 39 0 * * * * * * 2449 0 0 W 40 * * * * 2157 * * * * 2039 * * * * * * * * 1332 2885 40 0 * * * * * * 2449 0 0 R 41 * * * * * * * * * * * * * * 366 * 2157 * * * 41 0 * * * * * * 2449 0 0 Q 42 2975 * * * * * * * 2885 3137 * 2157 * 1323 * * * * * * 42 0 * * * * * * 2449 0 0 E 43 2885 * 2039 1725 * * * * * * * * * 3404 * * 2157 * * * 43 0 * * * * * * 2449 0 0 L 44 * * * * * * * * * 0 * * * * * * * * * * 44 0 * * * * * * 2449 0 0 K 45 * * * * * * * * 366 * * * * * 2157 * * * * * 45 0 * * * * * * 2449 0 0 C 46 * 2610 * 2077 * 2469 * * 3053 3227 * * * * * 2387 * * * * 46 0 * * * * * * 2301 0 0 R 47 * * * 2469 * * 2387 * * 2077 * * * * 1354 * * * * * 47 0 * * * * * * 2301 0 0 G 48 * * * * * 0 * * * * * * * * * * * * * * 48 0 * * * * * * 2333 0 0 H 49 * * * * * * 377 * * * * * * * * * * * * 2122 49 0 * * * * * * 2333 0 0 A 50 1044 * * * * * * * * * * * * * * 1540 2547 * * * 50 0 * * * * * * 2333 0 0 D 51 * * 671 1984 * * * * 3066 * * * * * * * * * * * 51 0 * * * * * * 2333 0 0 A 52 1617 * * * * * 2134 * * 3288 * * 2122 * * * * 3132 * * 52 0 * * * * * * 2333 0 0 D 53 * * 2691 243 * * * * * * * * * * * * * * * * 53 0 * * * * * * 2333 0 0 I 54 * * * * * * * 0 * * * * * * * * * * * * 54 373 2134 * 1585 585 * * 2333 1145 0 E 55 3132 * * 1223 2793 * * * * 3548 * * * * * * 2134 * * * 55 0 * * * * * * 2333 0 0 A 56 377 * * * * * * * * * * * * * * 3548 2793 * * * 56 0 * * * * * * 2333 0 0 V 57 3066 * * * * * * 2547 * * * * * * * * 1564 1430 * * 57 0 * * * * * * 2333 0 0 F 58 * * * * 0 * * * * * * * * * * * * * * * 58 0 * * * * * * 2333 0 0 A 59 1867 * * * * * * * * 3548 2793 * * * * 3132 1389 * * * 59 0 * * * * * * 2333 0 0 K 60 * * * * * * * * 362 * * * * 3288 3066 * * * * * 60 0 * * * * * * 2333 0 0 Y 61 * * * * 2134 * * * * * * * * * * * * * * 373 61 0 * * * * * * 2333 0 0 D 62 * * 0 * * * * * * * * * * * * * * * * * 62 0 * * * * * * 2333 0 0 V 63 * * * 2122 * * * * * 3288 * 3132 * 2547 2134 * * 2691 * * 63 0 * * * * * * 2333 0 0 D 64 * * 0 * * * * * * * * * * * * * * * * * 64 0 * * * * * * 2333 0 0 G 65 * * * * * 0 * * * * * * * * * * * * * * 65 0 * * * * * * 2333 0 0 D 66 * * 373 * * * * * * * * 2134 * * * * * * * * 66 0 * * * * * * 2333 0 0 R 67 * * * * * * * * * * * 2122 * 2547 739 * * * * * 67 0 * * * * * * 2333 0 0 V 68 * * * 2547 * * * 2168 * * * 2122 * * * * * 1409 * * 68 0 * * * * * * 2333 0 0 L 69 * * * * * * * * * 0 * * * * * * * * * * 69 0 * * * * * * 2333 0 0 D 70 * * 707 * * * * * * * * 2208 * * * * 2547 * * * 70 0 * * * * * * 2333 0 0 A 71 2691 * * 700 * * * * * 2122 * * * * * * * * * * 71 0 * * * * * * 2333 0 0 E 72 * * * 1365 * * * 3288 3205 * * * * * 2547 * 2793 3548 * * 72 0 * * * * * * 2333 0 0 E 73 * * * 0 * * * * * * * * * * * * * * * * 73 0 * * * * * * 2333 0 0 Q 74 * * * * * * 2547 3132 * * * * * 484 * * * * * * 74 0 * * * * * * 2333 0 0 M 75 * * * 2134 * * * * * * 2691 * * 990 * 3132 * * * * 75 0 * * * * * * 2333 0 0 K 76 * * * * * * * * 1060 * * * * 1319 3066 * * * * * 76 0 * * * * * * 2333 0 0 M 77 * * * * * * * * * 2122 377 * * * * * * * * * 77 0 * * * * * * 2333 0 0 A 78 1379 * * * * * 3288 * * * * 3132 * * 1326 * * * * * 78 0 * * * * * * 2333 0 0 H 79 * * 1870 * * * 2691 * 3132 * * * * 2134 * * * * * 2122 79 0 * * * * * * 2333 0 0 D 80 * * 377 2122 * * * * * * * * * * * * * * * * 80 0 * * * * * * 2333 0 0 L 81 * * * * * * * 2122 * 377 * * * * * * * * * * 81 0 * * * * * * 2333 0 0 E 82 * * 2019 409 * * * * * * * * * * * * * * * * 82 0 * * * * * * 2333 0 0 G 83 * * * 1937 * 2331 * 2919 1893 * * * * * * * 2851 * * * 83 0 * * * * * * 2294 0 0 Q 84 * * * 915 * * * * 2919 * * * * 1568 * * * * * * 84 0 * * * * * * 2294 0 0 K 85 * * * * * * * * 1568 * 2919 * * * 915 * * * * * 85 0 * * * * * * 2294 0 0 S 86 * * * 1317 * * * * * * * 2851 * * * 2331 * 1937 * * 86 0 * * * * * * 2294 0 0 D 87 1937 * 1096 2919 * * * * * * * * * 2851 * * * * * * 87 0 * * * * * * 2294 0 0 L 88 * * * * * * * * * 0 * * * * * * * * * * 88 0 * * * * * * 2294 0 0 N 89 * * 1893 2919 * * * * * * * 1100 * * * 2919 * * * * 89 0 * * * * * * 2294 0 0 N 90 2919 * 1885 * * * * * * 1893 * 2331 * * * * 2954 * * * 90 0 * * * * * * 2294 0 0 Q 91 * * * 320 * * * * * * * * * 2331 * * * * * * 91 0 * * * * * * 2294 0 0 L 92 * * * * * * 2481 750 * 2143 * * * * * * * * * * 92 0 * * * * * * 2209 0 0 A 93 2143 * * 1166 * * * * * * * * * 2749 * 2481 * * * * 93 0 * * * * * * 2209 0 0 E 94 * * 2677 1423 * * * * 2808 * * * * * * 2481 2749 * * * 94 0 * * * * * * 2209 0 0 L 95 * * * * * * * * * 521 * * * * * * * 1723 * * 95 0 * * * * * * 2209 0 0 E 96 * * * 1222 * * * * * * * * 1756 * 1862 * * * * * 96 0 * * 0 * * * 1760 0 0 //