HHsearch 1.5 NAME c2mh2A_ FAM FILE c2mh2A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2mh2A_.a3m DATE Sat Apr 19 22:57:17 2014 LENG 64 match states, 64 columns in multiple alignment FILT 62 out of 66 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.4 EVD 0.4222 0.7430 SEQ >ss_dssp CHHHHHHHHHHHHTSCEEHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEEC >sa_dssp EBCDDACEBADDDEEDCBCEDACCDAEEEDECDEDDADEBADDACEDEDBDDDEDEEDDDACCE >ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCEEEEEEC >ss_conf 9149999999971998869999998325777689999999999997797888850767998859 >Consensus xaxxxVlxylxxqNRPysxxdvxxnLxxxxxixKxxvxKxLdxLxxxgxixxKxxGKqkvYxxn >c2mh2A_ GAPGIILRYLQEQNRPYSAQDVFGNLQKEHGLGKAAVVKALDQLAQEGKIKEKTYGKQKIYFAD >UniRef50_Q23VW9(145-203:304) Putative uncharacterized protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23VW9_TETTH E=3e-08 s/c=1.01 id=26% cov=91% -------DYMKNSNKPFNATTLESNLKGKTQFKKGSIEAALSQAVEEKYIVRKAYGSAYVFWYN >UniRef50_A8BZF2(12-69:231) Putative uncharacterized protein n=2 Tax=Giardia intestinalis RepID=A8BZF2_GIALA E=0.0004 s/c=0.79 id=31% cov=91% -----VKELMQSSNKPQNVQTAINNTGSRY--GKATVQKALDELVAQNLCIYTEIGKTgKLYLWN >UniRef50_C5E303(18-78:214) KLTH0H09240p n=1 Tax=Lachancea thermotolerans CBS 6340 RepID=C5E303_LACTC E=6e-12 s/c=1.18 id=37% cov=97% -AESIIESYLIEQYRPFAVNDIIQNLHNK--VSRTNTIKALESLTKQQRITCKTFGKIAIYVCN >UniRef50_D2UYQ1(6-66:210) Predicted protein (Fragment) n=1 Tax=Naegleria gruberi RepID=D2UYQ1_NAEGR E=1e-10 s/c=1.11 id=29% cov=92% ----VVLDLFKKTNRPFNLQNVID--HSKGQLKKAMATKCVDHYEKKGDLSVKVNGKTKIWWIN >UniRef50_A4RW29(11-67:235) Predicted protein (Fragment) n=2 Tax=Ostreococcus RepID=A4RW29_OSTLU E=3e-10 s/c=1.16 id=38% cov=91% -----VRAYVARMNRPLNATNVGDAL-GASGVKKGLAQKYLDALVDNGAIRVKDAGKQKVYYA- >UniRef50_Q8SSK7(9-68:197) RIBOSOME RECYCLING FACTOR n=1 Tax=Encephalitozoon cuniculi RepID=Q8SSK7_ENCCU E=8e-10 s/c=1.08 id=34% cov=91% -----VFQMMYRCNRPTSKSEVVAYFKGE--IGGTAIQEILDCLEESGRLITKTYGKSKIYLVN >UniRef50_C5MCV0(14-73:113) Putative uncharacterized protein n=1 Tax=Candida tropicalis MYA-3404 RepID=C5MCV0_CANTT E=5e-09 s/c=1.04 id=31% cov=91% ----LVQQYMKDQYRPYSTTDIQLNMHNI--LTKAKLTNVLESLVSDNELICKTIGKTNYYTY- >UniRef50_Q4DPL3(15-75:233) Putative uncharacterized protein n=4 Tax=Trypanosoma RepID=Q4DPL3_TRYCR E=8e-08 s/c=0.96 id=28% cov=91% -----ILQWFECEGEPATVQSLTDALGSK--FGKALVQSVLEQCVSAKKLQAKDIKKARLYFLN >UniRef50_Q54UM1(12-68:243) Homologous-pairing protein 2 homolog n=1 Tax=Dictyostelium discoideum RepID=HOP2_DICDI E=5e-07 s/c=0.98 id=36% cov=86% -----ILNLINKANRPYNYQMIEAAF---PSMGKTQIVKTLKSLGEQGKLTFKEYNKAIIYW-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 1072 * * * * 2055 * * * * * * * * * 1818 * * * * 1 0 * * * * * * 2100 0 0 A 2 0 * * * * * * * * * * * * * * * * * * * 2 0 * * * * * * 3154 0 0 P 3 4238 * * 831 * * * * 3761 * * * 3093 3007 * 3844 * * * * 3 0 * * * * * * 3180 0 0 G 4 2409 * 2958 3322 * 2198 * * 2834 * * * * 4872 * 3177 3641 * * * 4 0 * * * * * * 3430 0 0 I 5 4796 * 4901 * * * * 3242 * 1375 2522 * * 3776 * * * 2380 * * 5 0 * * * * * * 4011 0 0 I 6 * * * * * * * 1281 * 3453 * * * * * * * 1008 * * 6 0 * * * * * * 4454 0 0 L 7 5521 5203 * 3282 3547 * 5569 * 4262 1051 5293 * * 4087 5372 * * * * 3348 7 0 * * * * * * 4444 0 0 R 8 3975 6072 2485 1792 * * * * 4004 5684 * 3118 * 3307 4063 3632 5994 * * * 8 0 * * * * * * 4497 0 0 Y 9 * * * * 3772 * * 5359 * 3585 4956 * * * * * * 4536 3950 558 9 0 * * * * * * 4497 0 0 L 10 * * * * 2633 * * 4232 * 1453 1530 * * * * * * 3754 * * 10 0 * * * * * * 4497 0 0 Q 11 5422 * * 2667 * * 6061 3813 1571 4118 * 3570 * 3390 3659 * * 4841 * 4469 11 0 * * * * * * 4497 0 0 E 12 4634 4818 4637 2569 * * * 5386 1937 * * 4406 * 2801 2715 3514 * * * * 12 25 5860 * 2807 222 * * 4496 1000 0 Q 13 3983 4985 * 3496 * * 5923 * * * 4954 4397 * 987 4629 3477 3543 * * * 13 25 * 5860 * * * * 4496 0 0 N 14 * * * * * 4775 * * * * * 389 * * * 4060 * * * 2837 14 0 * * * * * 0 4519 0 1000 R 15 * * * 4775 * * * * 2798 * * * * 4602 361 * * * * * 15 0 * * * * * 0 4519 0 1000 P 16 * * * * * * * * * * * * 0 * * * * * * * 16 0 * * * * * 0 4519 0 1000 Y 17 3982 * * * 1948 * * * * 3260 * * * 5027 * * 4957 * * 971 17 0 * * * * 0 * 4519 0 1000 S 18 3817 * * * * 4082 * * * * * 2092 * 5881 * 922 3462 * * * 18 0 * * * * * * 4555 0 0 A 19 1346 * * * * * * 3353 5069 3330 * * 5287 * * 3911 5015 2121 * 5237 19 0 * * * * * * 4492 0 0 Q 20 5715 * * * * 5668 * 2784 6079 5728 * 2645 * 1494 * 3967 3092 3531 * * 20 46 * 5004 * * * * 4492 0 0 D 21 * * 1124 3482 * * * 5102 * * 4461 2233 * 4681 * 4002 3984 * * * 21 0 * * * * * 0 4421 0 1000 V 22 4442 * * * * * * 1574 * 2372 * * * * * * * 1234 * * 22 0 * * * * * 0 4421 0 1000 F 23 3022 4743 * 4106 2424 5719 * 2977 * * * * * 4854 * 2961 4373 2493 5419 4767 23 0 * * * * * 0 4421 0 1000 G 24 2469 * 1615 4823 * 4259 * * * 3171 5937 3382 * 3894 * 3264 6550 * * * 24 61 * 4596 * * 0 * 4421 0 1000 N 25 2395 * * 4224 * * * * * * * 607 * * * * 5445 6151 * 3988 25 0 * * * * 975 1026 4445 0 1512 L 26 * * * * 4129 * * * * 277 3542 * * * * * 4986 * * * 26 129 * 3545 * * 0 * 4471 0 1000 Q 27 5513 * 5375 * * 3047 1150 * 2283 * * * 6151 3654 3584 * * * * * 27 49 * 4917 * * 504 1761 4413 0 2095 K 28 4602 * 4970 * * 1836 * * 2970 * * 1583 * 5341 4593 3069 * * * * 28 247 4605 3102 0 * 1591 582 4449 1000 1863 E 29 5390 * 4677 2233 * * 5761 4203 1807 * * 4477 * 4162 3279 * 3791 3476 * * 29 1085 * 920 * * 1366 708 4466 0 2891 H 30 * * * 4836 4337 4516 1885 * 4805 4029 4513 * 4188 * * 4510 4045 * * 1732 30 505 * 1760 * * 2735 235 3931 0 3833 G 31 2690 4681 * * 3828 2258 4448 * 4354 * 4778 3707 * 3145 * 3061 3540 * * * 31 68 * 4448 * * 421 1982 3887 0 3919 L 32 * * * * 2665 * * 1830 * 2592 4954 * * * * * * 1535 * 5803 32 0 * * * * 0 * 4447 0 2609 G 33 4491 * * * * 1755 * * 2081 * * 5014 4149 * * 2565 2586 * * * 33 0 * * * * * * 4492 0 0 K 34 * * * * * 5069 * * 227 3535 * * * * 5083 * * * * * 34 0 * * * * * * 4492 0 0 A 35 1455 * * * * 3875 * * 5168 * * 4838 4335 6320 * 3049 1751 5354 * * 35 0 * * * * * * 4492 0 0 A 36 1891 * 6285 6079 * 6258 5946 * 4889 3340 4109 4179 * 2934 * 4042 3086 3387 * 5448 36 0 * * * * * * 4492 0 0 V 37 2447 * * * * * * 2661 * 3067 5829 * * * * * 3779 1156 * * 37 0 * * * * * * 4492 0 0 V 38 5342 * 5668 4242 * 6036 * 4192 * 5808 * 6451 * 1270 * 5229 2312 3053 * 4632 38 0 * * * * * * 4492 0 0 K 39 4443 * 6158 4520 * * * * 590 * * 4795 * * 2632 4838 * * * * 39 0 * * * * * * 4492 0 0 A 40 1449 3677 * 5168 6227 * 5625 3064 * 3785 6648 5004 5728 * * 4952 4187 2877 * 5754 40 0 * * * * * * 4492 0 0 L 41 * * * * * * * 5004 * 324 3328 * * * * * * 3828 * * 41 0 * * * * * * 4492 0 0 D 42 5358 * 924 1872 * * * * 3676 6451 * * * * 4978 5088 * 5360 * * 42 0 * * * * * * 4492 0 0 Q 43 2961 5069 3477 2953 * 5609 5673 * 3857 * * 5104 * 2629 5168 2881 3020 4790 * * 43 0 * * * * * * 4492 0 0 L 44 5088 4838 * * * 5450 * * * 208 6335 * * * * 6036 * * * 5673 44 0 * * * * * * 4492 0 0 A 45 2627 * * 3889 * 5237 3484 * * * * * * * 3970 2989 4815 1220 * * 45 0 * * * * * * 4492 0 0 Q 46 2986 * 2778 1872 * 5787 * 6328 3687 6134 * 3833 * 3630 * 2893 * 4421 * * 46 28 5716 * 2585 263 * * 4492 1000 0 E 47 3709 * 4795 1563 * * * * 2402 * * 3821 * 2942 4435 3603 5041 * * * 47 0 * * * * * * 4488 0 0 G 48 * * 5386 4489 * 896 6062 * 2270 * * 3048 5725 4956 * * * * * * 48 0 * * * * * * 4488 0 0 K 49 5673 * 3927 2781 5433 * * * 1445 3326 6498 * 5725 5183 3074 4083 * 6131 * 5086 49 0 * * * * * * 4488 0 0 I 50 * 5000 * * 5163 * * 1130 * 1192 * * * * * * * 4436 * * 50 0 * * * * * * 4488 0 0 K 51 5726 5433 * 3961 4544 * 4341 2588 3910 5046 * 4909 * 3047 4790 3857 3420 2429 * * 51 0 * * * * * * 4488 0 0 E 52 3188 2535 * 2543 4287 3365 * * * * 3661 * * 5319 5086 3943 5066 3059 * 4339 52 0 * * * * * * 4488 0 0 K 53 * * * 5622 * * * * 245 * * * * * 3961 * 5000 4628 * * 53 0 * * * * * * 4488 0 0 T 54 3153 * 3167 2153 * 5665 * 5825 * 3787 6604 4279 5789 6204 * * 2181 2970 * * 54 0 * * * * * * 4488 0 0 Y 55 3834 6028 * * 3118 5622 * 2876 * 4628 5286 3551 * * * 5255 5665 5001 * 1271 55 42 5110 * 3212 165 * * 4488 1396 0 G 56 5513 * * * * 205 * * 4043 * * 5234 * * * 5433 * * * * 56 0 * * * * * * 4488 0 0 K 57 5753 * 4616 * * * * * 211 * * * * * * 3702 * * * * 57 19 6267 * 0 * * * 4544 1000 0 Q 58 2576 * * * * * * 3923 * * 5001 * * 1086 * 3701 2697 4927 * * 58 45 5035 * 0 * * * 4544 1000 0 K 59 5093 * * * * * * 3274 881 * 5215 5896 * 4007 3679 4510 4944 5864 5707 5165 59 0 * * * * * * 4544 0 0 I 60 * * * * 4534 * * 1454 * 3671 5847 * * * * * 4616 1309 * 4274 60 0 * * * * * * 4544 0 0 Y 61 * 5884 * * 3241 * * * * * * * * * * * * * 4090 289 61 0 * * * * * * 4544 0 0 F 62 * * * * 2711 * 3775 5798 * 1921 5844 * * * * * 5539 2396 3013 2843 62 0 * * * * * * 4511 0 0 A 63 1807 4203 * * * * * 3067 * 3639 5938 * * * 4294 * * 2591 4579 2433 63 0 * * * * * * 4318 0 0 D 64 * * 2320 4764 * * * * * * * 390 * * * * * * * * 64 0 * * 0 * * * 3975 0 0 //