HHsearch 1.5 NAME c2maxA_ FAM FILE c2maxA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2maxA_.a3m DATE Sat Mar 15 08:13:20 2014 LENG 114 match states, 114 columns in multiple alignment FILT 110 out of 170 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.3 EVD 0.3973 -1.2176 SEQ >ss_dssp CCSCCCCCCCCCCCCCCSCCCGGGGGGGSBGGGGCCCHHHHHHHHHHTCCBHHHHHHSCHHHHTTSSSCCHHHHHHHHHHHHHTTCCTTCCSSCTTHHHH HHHHTTTCCCCCCC >sa_dssp EEEEEEEEEEEEEEEEEEDDEECCEDBDCEAEEBECDDEACEBADEDDCDCAACABCBCDEEAEEBEEBDEEBCECACDCADECCCDBCDDEDCEEEEEC DEEBEECDEEEEEE >ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH HHHHHHHHHCCCCC >ss_conf 9634423225421124565444566763029982989999999998688738999829999998365879778999999999808703675775216899 99997766266789 >Consensus lxxfxxxxxxxxexxxdxxxxxxxxxlxxxIxxLxLSvRsxNcLkxagIxtixdLvxxsxxdLlxiknlGxKSlxEIxekLxxxGlxlGmxlxxxxxxxx xxxxxxxxdxxxxx >c2maxA_ LGVFGERPIANTEYSGDYAQRDDAKDLSAKIESMNLSARCFNCLDKIGIKYVGELVLMSEEELKGVKNMGKKSYDEIAEKLNDLGYPVGTELSPEQRESL KKRLEKLEDKGGND >UniRef50_C5SIY2(3-74:130) Putative uncharacterized protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SIY2_9CAUL E=9e-06 s/c=0.71 id=29% cov=27% ---------------------------------------------------VRQAVQLTDRDLRNMPNLGRVSIKELKDKL------------------- -------------- >UniRef50_D1CF08(128-233:785) RNA polymerase sigma factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CF08_THET1 E=2e-15 s/c=0.79 id=25% cov=90% LGYVGRSQALVKQYTEEYLMKllrlSKSHEVDNSLENLQLSPRIRGILRRAGIFTADQLYRLTDEELLKLKGIGKAALEEIKAV------KLG---DADN KRSIEEEKQRLDDAG--- >UniRef50_B1GZB0(224-317:323) DNA-directed RNA polymerase alpha chain n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZB0_UNCTG E=8e-15 s/c=0.86 id=27% cov=81% LVIFTDNAFKTEEVSAD--KEEQDGILGKPVSIMDISVKTLKSLKSAGIETVEDLVKIKEEDLLNFNNLSKRSCEEIKNRVKELGLSLGMKIE------- -------------- >UniRef50_A7M3S5(151-248:248) Putative uncharacterized protein n=7 Tax=Bacteroidales RepID=A7M3S5_BACOV E=6e-13 s/c=0.77 id=31% cov=71% ------------EIALDNIQAEEVHYLSQPIFSMKMTPIVRSKLESHGILYVGDLIQLNEEYLMEIWGLGPVALERIKTKLNENGVWFGMDV-------- -------------- >UniRef50_A0JVH2(16-69:72) Putative uncharacterized protein n=2 Tax=Arthrobacter RepID=A0JVH2_ARTS2 E=0.0001 s/c=0.88 id=21% cov=34% -----------------------------------------------GLETLEQVVQFGQRELLKLHGMGVKTMAQLEDAMDEHG--------------- -------------- >UniRef50_O46914(217-318:318) DNA-directed RNA polymerase subunit alpha n=5 Tax=Eukaryota RepID=RPOA_GUITH E=3e-18 s/c=0.91 id=30% cov=73% INLFSPLKTIDGESETDYETNETSHINQILIEELQLSVRAYNCLKRgcAHIHSVADLLDYSQEDLIEIKNFGQKSAEEVIDALQ---------------- ---------------- >UniRef50_A8SD09(52-161:1010) Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SD09_9FIRM E=0.0009 s/c=0.41 id=29% cov=46% -----------------------------QITEIDMSARGFHYLTLMGCTTIAQLVRLKREDFQKTANIGEKTIEIIEES-------------------- -------------- >UniRef50_B2Y1Z1(277-335:340) RNA polymerase alpha chain n=3 Tax=Spermatophyta RepID=B2Y1Z1_WELMI E=1e-05 s/c=0.86 id=28% cov=22% ----------------------------------------------------------SQQDLKNLEYSKKESIEQTLEILH------------------ -------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * 2811 * 222 * * * * * * * * * * 1 0 * * * * * * 3188 0 0 G 2 * * * * * 867 * * * * * 2811 * * * 2803 * 2590 * * 2 0 * * * * * * 3188 0 0 V 3 * * * * * * * 2590 * 1807 * * * 2087 * * * 2834 * 2534 3 0 * * * * * * 3188 0 0 F 4 * * * * 234 * * * * * * * * * * * * 2742 * * 4 289 2461 * 0 * * * 3435 1187 0 G 5 3479 * 3405 * * 1145 * * * * * * * * 3163 3160 2835 * * * 5 0 * * * * * * 3435 0 0 E 6 * * 2370 1299 * * * * * * * * 3432 * 3013 2444 * * * * 6 0 * * * * * * 3537 0 0 R 7 * * * 4074 * * * * 2872 2701 * 2573 * * 2159 2410 * * 3837 * 7 95 * 3965 * * * * 3734 0 0 P 8 1955 * * * * * * * 2868 * * * 1027 3127 * * * * * * 8 0 * * * * 0 * 3757 0 1000 I 9 3371 * 4069 * 3618 * * 2058 * 3006 * * 4229 * * 3312 4359 2359 * * 9 0 * * * * * * 4005 0 0 A 10 1733 * * * * 4141 * 3424 2950 3579 * 3723 4344 4890 * 4379 * 2948 * * 10 0 * * * * * * 4129 0 0 N 11 4795 * 2989 3026 * 4356 4199 * * * * 1605 * 3372 * * 3253 3610 * * 11 0 * * * * * * 4145 0 0 T 12 * * * 3814 4657 4667 * 4402 3669 2888 4243 * 3004 4692 * * 2469 2380 * * 12 0 * * * * * * 4157 0 0 E 13 * * 2960 933 * 4722 * * 5057 4348 * 4748 4747 3917 * * 4350 4607 * * 13 132 4731 4322 2000 415 * * 4293 1000 0 Y 14 * * * 4678 2278 * 4792 2713 4957 3328 * 3730 * 5205 * 4915 4889 3371 5176 2829 14 0 * * * * 0 * 4265 0 1000 S 15 2448 * 2598 2929 * * * 4466 5227 4764 4236 * * * * 1985 4105 4389 * * 15 0 * * * * * * 4337 0 0 G 16 4132 * 4861 2471 * 2750 5129 4970 * 3251 * * * 4538 * 2692 3494 3595 * 4486 16 113 3728 * 1283 763 * * 4432 1556 0 D 17 4926 * 989 1542 * * * * * * * * * 4915 5063 4136 * * * * 17 80 * 4216 * * * * 4437 0 0 Y 18 4822 * 4954 3900 * 3336 4056 * 2573 * 4832 3703 * 4836 * 2738 4762 * * 2290 18 0 * * * * * 0 4346 0 1000 A 19 1853 * * 3013 * * * 3211 3157 4375 4004 5525 3785 3978 * 4090 4257 * * * 19 0 * * * * 0 * 4239 0 1000 Q 20 3543 * 5708 2451 * 5388 * 5055 2873 * 3875 4347 * 2653 3187 3594 5428 5073 * * 20 0 * * * * * * 4275 0 0 R 21 3109 * 5680 1957 5503 * * * 3164 3979 * 2598 4338 5299 3670 4488 5174 5708 * * 21 98 4576 5388 2000 415 * * 4275 1000 0 D 22 4261 * 1639 1555 * * 4984 * * 4595 * 4428 5391 4190 4376 4640 * * * * 22 0 * * * * * 0 4325 0 1000 D 23 3417 * 2153 2233 5705 4945 4099 * 2856 * 5056 * 5149 3704 * 5371 4642 5543 * * 23 145 3385 * 1034 967 * 0 4215 2153 1000 A 24 2969 * 2832 5575 * 5969 5467 4362 * 3565 * 3285 5312 4519 4295 2413 5388 3248 * * 24 0 * * * * * 0 4215 0 1000 K 25 4067 * 4242 3825 5776 3916 3198 5383 1994 * * 3927 4810 3293 4438 4285 * * * 4392 25 0 * * * * * 0 4083 0 1000 D 26 5947 * 4712 2426 4520 * * 3501 4236 2486 * 4301 * * 4093 3936 5619 3090 * 3580 26 26 5790 * 2322 322 0 * 4123 1000 1000 L 27 6054 * * 4965 3641 * 6518 5537 * 567 6765 4365 * 5886 * 6480 5851 4319 * 6395 27 0 * * * * * * 4179 0 0 S 28 4254 * 2725 2821 6381 5221 * * 4251 5233 * 2548 * 6176 6306 1847 4790 6177 * 6451 28 0 * * * * * * 4194 0 0 A 29 3525 * 5994 6227 6299 * 5978 2961 3146 3165 3222 4521 * 3641 3555 4699 3289 4444 * * 29 32 * 5508 * * * * 4223 0 0 K 30 4488 * 3788 4914 * 6432 5207 * 3751 4832 * 5048 2263 3639 4206 1846 4299 * * * 30 0 * * * * * 0 4338 0 1000 I 31 * * * * * * * 565 * 2662 * * * * * * 6004 2733 * * 31 0 * * * * 0 * 4648 0 1000 E 32 3698 * 2267 1458 5219 6339 5437 * 5308 * * 4450 6104 6972 4851 4256 3452 6785 * 6953 32 0 * * * * * * 4677 0 0 S 33 5314 * 2230 1847 6695 6236 * 4359 6007 4779 6540 3152 * 3599 5144 3215 5771 * * * 33 0 * * * * * * 4685 0 0 M 34 * * * * 5693 * * 4152 5860 344 3984 * * * * 6035 6477 5080 * * 34 0 * * * * * * 4736 0 0 N 35 * * 2053 2064 * 2822 * * 4207 * * 2166 5196 4510 5666 * * * * 6573 35 0 * * * * * * 4736 0 0 L 36 * * * * 4107 * * 4268 * 286 4291 * * * * * * 5750 * * 36 0 * * * * * * 4795 0 0 S 37 * * 6709 5799 * 5250 * * 5735 * * 6193 3653 * * 473 3133 * * * 37 0 * * * * * * 4795 0 0 A 38 3196 * * * 6193 * * 4951 6468 4180 6576 6262 3956 4026 5192 4724 3349 1163 * 5705 38 0 * * * * * * 4795 0 0 R 39 6863 * * * * * 5568 5476 4249 * * 5735 5673 5799 253 * * * * * 39 0 * * * * * * 4795 0 0 C 40 2159 6127 * 6239 * 5594 * 3440 * 4838 * * 5938 * * 1776 2251 3973 5750 * 40 0 * * * * * * 4795 0 0 F 41 3562 * * 4684 2876 * 6967 4357 5053 2899 * 6504 * 5212 3244 5117 3267 4591 * 2311 41 0 * * * * * * 4795 0 0 N 42 * * * * * 6340 4925 6808 3422 4891 * 479 * * 5673 5046 4274 * * * 42 0 * * * * * * 4795 0 0 C 43 2371 1145 * * 5150 6224 5652 4112 4607 * * * * * 6193 3586 5901 4266 * 5126 43 0 * * * * * * 4795 0 0 L 44 * * * * 4860 * * * * 84 5512 * * * * * * * * * 44 0 * * * * * * 4806 0 0 D 45 3473 * 4143 2963 * * * 5726 1260 6689 5153 4675 * 6651 2888 5096 4735 * * * 45 0 * * * * * * 4806 0 0 K 46 4057 * 5726 4447 * 6619 6126 * 2346 4779 * 3405 * 7218 1546 2834 * 6002 * 5785 46 10 7120 * 1000 1000 * * 4918 1000 0 I 47 1282 5785 5948 3465 * 6689 4807 5147 * 4537 3845 3316 * 6902 5440 3301 6258 4998 * * 47 0 * * * * * * 4918 0 0 G 48 * * 3884 4485 * 952 7097 * 3754 * * 2280 6048 4401 * 5585 * * * * 48 0 * * * * * * 4880 0 0 I 49 * 5583 * * 4345 * * 599 4907 4012 * * * * * * * 2799 * 5030 49 0 * * * * * * 4882 0 0 K 50 * 5714 3535 3707 3653 6658 3200 * 3675 3702 6591 2785 * 4981 4289 7536 2967 3904 * 5241 50 0 * * * * * * 4882 0 0 Y 51 * * * 7514 4670 * 7322 * 3992 3872 * 5321 * * 4330 3457 853 5784 * 3640 51 0 * * * * * * 4882 0 0 V 52 4830 * * * * * * 1683 * 2109 * * * * * * 5514 1413 6522 6211 52 0 * * * * * * 4956 0 0 G 53 3520 * 4197 2804 * 1320 * * 6055 6410 * 4340 * 4142 3681 3466 7166 * * 7294 53 0 * * * * * * 4956 0 0 E 54 6570 * 953 2131 * * * * 4296 * * 5285 * 2925 * 4783 * * * * 54 0 * * * * * * 4957 0 0 L 55 6822 * * * 5210 * * 5277 * 239 * * * * * * * 3456 * * 55 0 * * * * * * 4957 0 0 V 56 2946 4035 * 5997 * * * 2893 4874 2356 7479 5728 * 5706 * 6021 4452 1674 * 6465 56 0 * * * * * * 4957 0 0 L 57 3606 * 4206 4464 * 4446 6354 6607 2620 4740 5521 4539 * 2770 3045 2960 4296 4722 * * 57 0 * * * * * * 4956 0 0 M 58 5635 4377 * 6935 5831 * * 4295 2557 1783 3683 5543 * 5368 3797 6522 6900 4161 7359 3085 58 0 * * * * * * 4956 0 0 S 59 * * 4246 * * 4745 6431 * 4162 6228 * 3785 3467 * * 1510 1667 * * * 59 0 * * * * * * 4982 0 0 E 60 4461 * 2883 1693 * 5185 * 5819 3469 5317 6473 * 4448 3231 4012 4985 5101 5199 6954 5177 60 0 * * * * * * 4982 0 0 E 61 3875 * 2831 1766 * 5133 * * 4217 * * 3455 6613 3401 4238 3619 3703 6986 * * 61 15 * 6625 * * * * 4982 0 0 E 62 6219 * 1278 1561 * 5101 * * 6687 * * 6219 * 3790 5564 5069 5239 6033 * 5777 62 0 * * * * * 0 5027 0 1000 L 63 * * * * 4980 * * 3411 * 424 3552 * * * * * * 4509 * * 63 0 * * * * * 0 5027 0 1000 K 64 7164 * * 4205 6822 7203 * 3827 3061 1193 3546 * * 5606 3518 4802 5034 5119 * 7139 64 0 * * * * 0 * 5027 0 1000 G 65 3917 * 7554 3270 5647 6179 6573 * 2035 5709 7187 2918 * 4201 2603 2943 5091 * * * 65 0 * * * * * * 4982 0 0 V 66 5689 5541 * * 3553 7198 * 1497 5952 2146 4552 * * * * 4721 3894 3344 5917 6964 66 0 * * * * * * 4982 0 0 K 67 5246 * 5108 5287 * * 4984 5355 1532 5777 * 4827 2591 5952 2191 4972 * 6359 5755 * 67 0 * * * * * * 4982 0 0 N 68 * * * * 6141 1727 5415 * * * * 755 * * * 4944 * * * 4820 68 0 * * * * * * 4982 0 0 M 69 5355 * * * 1660 * * 2867 * 1337 3743 * * * * 6082 * 4758 * * 69 16 * 6525 * * * * 4982 0 0 G 70 5773 * 6214 * * 186 * * 5067 * * 5349 * * * 4847 * * * * 70 0 * * * * * 0 4978 0 1000 K 71 4806 * 6782 2845 * 5198 * * 2130 6749 * 3906 3262 3798 2245 7099 5501 3880 * * 71 0 * * * * * 0 5078 0 1000 K 72 5082 * * 5323 * 5631 * 6830 715 6188 5010 * * 5504 3262 4464 4445 5233 * 5757 72 0 * * * * 0 * 5078 0 1000 S 73 3657 5770 * * * 6768 5637 5440 * * * 6118 * 5116 5080 594 3321 6074 * * 73 0 * * * * * * 5083 0 0 Y 74 4548 6564 * 6882 5163 * * 2243 * 1064 5127 * * * 5477 6408 * 3062 * 4704 74 0 * * * * * * 4927 0 0 D 75 5112 6640 2521 1661 5632 * * 6969 4341 6328 * 3394 5762 3582 4248 4145 4351 5303 * * 75 0 * * * * * * 4927 0 0 E 76 6114 * 5149 391 * * * 4628 5762 5742 6589 * * 3738 4981 * * * * * 76 0 * * * * * * 4927 0 0 I 77 5934 * * * * * * 750 * 2291 * * * * * * 6058 2559 * * 77 0 * * * * * * 4933 0 0 A 78 4894 * 6750 2806 * * 5656 3636 1690 4272 6295 6988 * 3960 2589 7490 7105 3665 * 6717 78 0 * * * * * * 5106 0 0 E 79 3462 * 2466 1607 * * 6266 * 3309 6928 * 3777 * 3314 4647 5286 4683 * * * 79 14 6651 * 1000 1000 * * 5112 1000 0 K 80 2550 * * 6581 * 4822 * 3702 1437 4917 5109 * * 5668 3733 3739 4658 3926 * * 80 14 * 6669 * * * * 5112 0 0 L 81 * * * * 4481 * * 4613 * 333 4176 * * * 6359 * * 4236 * * 81 17 * 6401 * * * 0 5083 0 1000 N 82 2873 * 4080 2743 6391 3803 4168 7062 3123 * * 3114 * 3658 4047 3621 4435 6540 * * 82 0 * * * * * 0 4857 0 1575 D 83 3796 * 3490 1851 * 6516 * 4590 3499 5690 * 4739 * 3253 4898 2831 4597 4971 * 6383 83 0 * * * * 929 1075 4845 0 1575 L 84 5769 * * 6710 3296 * 4291 3813 3255 1489 3490 4753 * * 5207 6685 * 6225 5763 3436 84 16 * 6492 * * * 0 4680 0 1000 G 85 5774 * 6376 5127 * 398 * * 4853 * * 3135 * 5426 * 6551 * * * * 85 0 * * * * * 0 4604 0 1488 Y 86 * * * 4894 4153 * * * 4874 588 * * * * * * * 4397 * 2613 86 31 * 5562 * * 1114 895 4232 0 1488 P 87 * 5417 4837 3566 5843 * 3371 * 2839 4713 * 4718 3705 5532 3173 2138 4484 * 4437 * 87 56 * 4713 * * * 0 4216 0 1414 V 88 * * * * 1986 * * 4748 * 927 * * * * * 5074 5223 2964 * * 88 38 * 5261 * * 660 1446 4158 0 1891 G 89 5172 * * 4671 * 230 * * 6010 * * 4560 * 5483 * * * * * * 89 51 * 4841 * * 962 1039 4151 0 1587 T 90 * * * 4863 * * * 4608 4516 3729 1087 4416 * 4933 5430 3643 4412 5561 * 3578 90 0 * * * * * 0 4234 0 1544 E 91 4146 * 1684 2746 * * * 4579 3302 * * 3251 * 5561 3601 4450 3547 * * * 91 0 * * * * * 0 4234 0 1544 L 92 * * 3689 * 5071 5268 * 2324 5134 1042 * * * * * * 4631 3150 * * 92 0 * * * * 0 * 3952 0 1544 S 93 3989 * 2870 2347 * 5218 * 5098 * 4893 * 3798 3098 4459 * 2219 5242 * * 4692 93 63 4546 * 2585 263 * * 3837 1000 0 P 94 3978 * 3536 3089 * 2803 * * 3123 * * * 1767 * 4590 3368 4555 * * * 94 0 * * * * * * 3696 0 0 E 95 * * 2585 2222 4474 * 3107 * 4361 * * 2582 4445 4411 * * * * 4172 3412 95 0 * * * * * * 3584 0 0 Q 96 * * 4108 2966 * * * * 2876 2106 * 2927 4041 3346 4227 * * 3300 * * 96 0 * * * * * * 3611 0 0 R 97 4282 * 3662 3097 * * * * 1417 4223 * * 2927 * 2879 4128 * * * * 97 0 * * * * * * 3611 0 0 E 98 * * 2758 1315 * * * * 4110 3862 * 3899 * 4075 3635 3098 * * * * 98 0 * * * * * * 3521 0 0 S 99 2143 * * 2970 3805 * * 2942 3842 * * 3622 * * * 2835 2707 * * * 99 0 * * * * * * 3554 0 0 L 100 * * 3431 2884 * * * 2691 * 1313 3842 * * * * * 3623 3973 * * 100 0 * * * * * * 3554 0 0 K 101 * * * 1661 * * 3711 * 1478 * * 3526 * * 3978 3347 * * * * 101 0 * * * * * * 3617 0 0 K 102 3678 * * 2427 * * 3711 * 2361 * * 3691 * 3526 3978 3544 * 3692 3753 * 102 0 * * * * * * 3617 0 0 R 103 * * 3294 2486 * * * * 2175 3410 * 3417 * * 3917 2602 * * * 3654 103 0 * * * * * * 3603 0 0 L 104 2527 * * * 3791 * * 3626 3451 2081 * 3521 * * 3603 * * 2506 * * 104 0 * * * * * * 3603 0 0 E 105 3626 * * 1755 * * * * 3410 * * 3521 3417 2525 * 2521 * * * * 105 0 * * * * * * 3603 0 0 K 106 * * * 2614 * * * * 1289 * * 3791 * 2555 3451 3417 * * * * 106 0 * * * * * * 3603 0 0 L 107 * * 3528 3447 * * 3337 3558 3468 1162 * * * * * * 3315 * * * 107 0 * * * * * * 3551 0 0 E 108 * * 3180 1744 * * 3117 * 1395 * * * * * 3388 * * * * * 108 0 * * * * * * 3359 0 0 D 109 * * 458 * * * * * * * * 2889 * * * 2866 * * * * 109 0 * * * * * * 3026 0 0 K 110 2352 * * * * * * * 788 * * * * 2152 * * * * * * 110 0 * * * * * * 2561 0 0 G 111 * * * * * 0 * * * * * * * * * * * * * * 111 0 * * * * * * 1925 0 0 G 112 * * * * * 0 * * * * * * * * * * * * * * 112 0 * * * * * * 1000 0 0 N 113 * * * * * * * * * * * 0 * * * * * * * * 113 0 * * * * * * 1000 0 0 D 114 * * 0 * * * * * * * * * * * * * * * * * 114 0 * * 0 * * * 1000 0 0 //