HHsearch 1.5 NAME c2ma6A_ FAM FILE c2ma6A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2ma6A_.a3m DATE Sat Aug 3 08:24:54 2013 LENG 61 match states, 61 columns in multiple alignment FILT 117 out of 5197 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.9 EVD 0.5052 1.6768 SEQ >ss_dssp CCCSSCSSSBCTTTSSSBCCEEEETTTEEECHHHHHHHTTTCCBCTTSCCBCSEEEECCCC >sa_dssp EEEEEDEECCADEDDEECCDACAEEDCDCABDEBAEEBEEEEEBACDDEEEBEDCDEDEEE >ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCCEECHHHHHHHHHHCCCCCCCCCCCCEEEECCCC >ss_conf 9888761001420012122014421788145689999996356979624600232100478 >Consensus sxlpxxxdxxCxICxxxxxxxxxxxCgHxfCxxCxxxxxxxxxxCPxCrxxixxixdxxkg >c2ma6A_ SHMPTSEEDLCPICYAHPISAVFQPCGHKSCKACINQHLMNNKDCFFCKTTIVSVEDWEKG >UniRef50_Q5DI39(243-299:308) SJCHGC02262 protein n=1 Tax=Schistosoma japonicum RepID=Q5DI39_SCHJA E=0.0007 s/c=0.79 id=22% cov=95% ----TTSSEVCNMCLESYTHVGILSCSHTFCANCTARWCNTFTNCPFCHPEINENSKWRNG >UniRef50_A0D595(436-492:510) Chromosome undetermined scaffold_38, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0D595_PARTE E=5e-08 s/c=1.03 id=25% cov=93% TELKAENDQNCFNCYQNESCAVYMPCGHgGLCIKCATEWFAEKQECLICRKPVEQVV----- >UniRef50_A7AUR5(200-264:269) Putative uncharacterized protein n=1 Tax=Babesia bovis RepID=A7AUR5_BABBO E=7e-08 s/c=0.90 id=25% cov=100% SNESTPADHLCAICIMEIggrEKIYVMPCdiRHFFHRECLRKWFKRSRICPICRIDIGDLLKQEK- >UniRef50_B2VLA3(333-387:441) Predicted CDS Pa_5_5450 n=5 Tax=Sordariales RepID=B2VLA3_PODAN E=6e-07 s/c=1.00 id=20% cov=90% SLVPQVVDYTCIVCLSICWLPIRLDCDHLFCIRCmIKMQNRQKRFCPLCRADVIQ------- >UniRef50_UPI000179D1D9(11-62:529) UPI000179D1D9 related cluster n=1 Tax=Bos taurus RepID=UPI000179D1D9 E=9e-07 s/c=1.05 id=27% cov=80% ------DKVMCSICLDYLKDPVTINCSHIFCYHCIINVCESAQQplyCSLCKTAFKK------- >UniRef50_Q00987(428-486:491) E3 ubiquitin-protein ligase Mdm2 n=95 Tax=Eumetazoa RepID=MDM2_HUMAN E=2e-05 s/c=0.85 id=26% cov=93% SSLPLNAIEPCVICQGRPKNGCIVhgKTGHLMaCFTCAKKLKKRNKPCPVCRQPIQMIV----- >UniRef50_C3YQZ6(77-129:747) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3YQZ6_BRAFL E=0.0003 s/c=0.88 id=26% cov=70% -------ESECCICLEDLKSSCpyeCTRCKKATHARCVVDYLEQSGErsfrCPFCR------------ >UniRef50_D0N6K8(119-172:729) Putative uncharacterized protein n=2 Tax=Phytophthora infestans T30-4 RepID=D0N6K8_PHYIN E=0.001 s/c=0.83 id=23% cov=85% -----DEPEYCILCADPIKFYAVGECNhHGICSKCSMRMrlIMDDRNCPMCKQPLDRVV----- >UniRef50_Q54H40(852-900:1419) Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54H40_DICDI E=0.0006 s/c=0.93 id=23% cov=77% ---------ICTDTIKKEDISTICGCTHKFCFECILEWSKQTNTCPLCKSRFVRI------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 3134 * * * * * * * * * * * * * * 493 2508 * * * 1 0 * * * * * * 5022 0 0 H 2 4798 * * 3372 3366 * 1391 * * 4358 * 3154 * * 4091 2913 4776 * * * 2 0 * * * * * * 6600 0 0 M 3 * * 4192 3198 * * * 2500 * 1421 2848 * * 4297 * * * 3375 * * 3 0 * * * * * * 6806 0 0 P 4 4202 * 3980 3817 * 5880 * 5636 4530 * * * 888 5723 * 3180 5404 5780 5672 * 4 0 * * * * * * 6959 0 0 T 5 4843 4172 4226 3005 * 6058 * 5858 4417 3244 4528 5682 4856 4122 5722 3385 2176 5121 * 5182 5 22 6043 * 1585 585 * * 6856 1000 0 S 6 5093 * 1641 3452 6221 4134 * 6002 4052 5927 * 2934 5182 5051 * 2572 5324 6128 * * 6 57 5377 6105 1649 554 * * 6901 1626 0 E 7 3507 * 2388 1554 * 4968 5329 * 5857 * * 4774 3947 4254 4900 4236 3924 * * * 7 30 * 5586 * * 0 * 6957 0 1000 E 8 4447 3776 1530 2161 * 6350 * 6318 6343 * * 5279 5479 4282 4757 3517 4312 * * * 8 0 * * * * 948 1054 7437 0 1607 D 9 4982 5534 2888 3463 3677 4079 6084 6781 4801 3902 6612 4370 4817 4594 3907 2950 5062 4692 * 4135 9 45 5027 * 2270 335 * 0 6998 2092 1000 L 10 5802 * 4548 3285 5294 * 6879 2379 4816 2670 4679 6344 5289 4887 5459 4161 3223 3350 * 5420 10 53 4801 * 1710 526 0 * 6928 2633 1000 C 11 * 0 * * * * * * * * * * * * * * * * * * 11 0 * * * * * * 6985 0 0 P 12 3614 3553 * * 4314 4451 6679 4679 6039 4303 6688 4574 2049 6856 5053 3028 4044 3384 * 6474 12 0 * * * * * * 6985 0 0 I 13 6932 * * 5582 6254 * * 963 6726 2684 5231 5855 * 6383 7052 6198 * 2463 * 5553 13 0 * * * * * * 6985 0 0 C 14 6383 124 6538 5332 * * * * * * * 5582 6198 * * * * * * * 14 26 5787 * 1295 755 * * 6985 1852 0 Y 15 5374 6659 5401 6162 2689 5381 4895 5687 4111 2316 3608 4205 6383 3716 5926 4262 6069 6515 5050 3496 15 0 * * * * * * 6985 0 0 A 16 4902 5628 2618 1845 * 4522 * 5288 4173 4927 5723 5076 * 3608 4212 3669 5035 4640 * 6181 16 33 5474 * 651 1461 * * 6985 1795 0 H 17 6198 5400 3762 3017 6186 5226 4377 5371 5071 3436 5546 3452 3225 5161 4126 3310 5054 4553 * 4264 17 0 * * * * * * 6985 0 0 P 18 4475 6254 6874 4039 2963 7186 5904 3239 5292 2436 4126 4267 3037 5275 4426 * * 4511 * 4124 18 152 3326 * 1666 546 * * 6985 4043 0 I 19 4279 6607 3886 3248 5324 5112 5603 4064 2583 4630 * 4992 5465 4874 2937 3922 3733 4375 6790 7209 19 48 4936 * 1395 690 * * 6985 2819 0 S 20 4566 5888 2626 2905 5039 6050 5209 * 3944 5460 * 2402 5572 5210 6193 3328 3690 4533 * 6155 20 81 4402 7058 997 1003 * * 6985 3104 0 A 21 2530 3771 * * 5623 4324 * 3828 5859 4026 * 6278 2270 * 5783 3718 4536 2706 * 5399 21 13 6835 * 2585 263 0 * 6987 1000 1000 V 22 2700 4463 * 6607 6216 6152 6029 2929 3831 4276 5241 * * 6778 4478 4621 4294 1741 * 5421 22 93 3995 * 1027 973 * * 6985 3376 0 F 23 4795 5146 7186 4768 3100 * 5779 2929 5295 2358 4598 * 5629 4751 4435 5160 3699 2872 * 5716 23 58 5016 6856 814 1214 * * 6985 2712 0 Q 24 4503 3819 * 5945 6740 5130 6661 4627 5463 1725 4020 * 6161 4077 6464 4324 2376 4078 * 7089 24 61 4588 * 1190 832 0 * 6981 2992 1000 P 25 5423 5524 4124 3763 5599 5536 5572 5072 3571 6646 * 3868 1333 6056 4097 4301 4401 * * * 25 67 4457 * 875 1137 * * 6985 2916 0 C 26 * 93 6216 * 6297 * * * * * * 6162 * * * * 5471 * * * 26 9 7360 * 1000 1000 * * 6985 1000 0 G 27 5244 5483 4195 * 6180 1158 5828 * 3356 4194 6100 4273 6578 5365 3579 4153 5383 * * * 27 17 6387 * 2414 300 * * 6985 1581 0 H 28 6283 6057 * * * * 188 * 6019 * * 5779 * 5851 * 6780 * * * 4858 28 97 3942 * 568 1620 * * 6985 3332 0 K 29 3372 5800 * 6148 5646 4909 4941 3801 5101 3402 4323 4684 5652 3469 4932 3428 3078 3131 * 4930 29 51 4847 * 0 * * * 6985 2376 0 S 30 4044 3933 * * 1178 6044 * 3710 * 4570 4755 * * * * 4763 5173 4046 7047 2959 30 98 3927 * 0 * * * 6985 3563 0 C 31 * 428 5983 6153 * * 2338 * * * * * * * * 6146 6061 * * * 31 0 * * * * * * 6985 0 0 K 32 2817 4796 5776 4092 4156 4449 4528 5178 3436 4337 5882 4938 6834 4770 3713 3809 4637 4973 5241 3484 32 0 * * * * * * 6985 0 0 A 33 3724 * 4047 2455 5629 4072 4223 5374 3476 5472 * 3957 4036 3749 4705 3440 4317 6631 5553 * 33 0 * * * * * * 6985 0 0 C 34 5106 103 * 5199 * * * 6332 * * * * * * * * * * * * 34 48 4919 * 1585 585 * * 6985 1764 0 I 35 2840 4343 * * 4032 5697 5756 1828 * 2159 6689 * * * * 4442 5199 3419 5048 * 35 44 5066 * 1726 519 * * 6985 2111 0 N 36 5012 * 4477 3653 6044 4983 6147 3489 3278 3216 4351 4522 6234 3423 3176 5237 3690 4685 * 4995 36 10 7127 * 1000 1000 * * 6974 1000 0 Q 37 4031 * 3371 2892 * * 6176 6181 2679 5390 6240 4670 4906 3146 2524 4514 4140 5790 6852 * 37 0 * * * * * * 6974 0 0 H 38 3808 4976 * * 5137 * 3585 4579 6961 3032 4470 4626 * 4700 5861 4294 6860 4849 1708 3808 38 73 4343 * 1309 746 * * 6974 2715 0 L 39 6118 5192 5993 6502 3414 * 6221 3040 4154 1513 4367 7047 4631 5843 5803 4969 5406 3668 5049 * 39 42 5135 * 1924 441 * * 6974 2275 0 M 40 3761 5162 4911 3155 5795 4358 * 6014 2594 3664 5935 4125 5596 3882 3265 4646 5300 4091 6189 5495 40 10 7160 * 0 * * * 6873 1000 0 N 41 6571 * 4963 3586 5597 6141 4037 4337 2920 4095 5027 3089 6725 3819 3174 4717 2928 5540 * 6955 41 42 5123 * 0 * * * 6873 2094 0 N 42 5872 6667 4507 6919 5215 4241 3611 6618 2711 6011 * 2596 5561 3361 4043 2652 4018 * 6913 7149 42 35 5376 * 1556 599 * * 6872 1692 0 K 43 5291 * 4431 4848 * 3124 * * 2302 5155 * 3618 3685 5113 2554 3173 4293 * 6655 5822 43 166 3326 6832 2029 406 * * 6861 4325 0 D 44 4813 4947 6578 3115 * 6451 5852 4469 3031 6947 * 3150 5677 4137 3479 3178 2633 4281 * * 44 103 3857 * 2117 378 * 0 6856 3700 1000 C 45 * 0 * * * * * * * * * * * * * * * * * * 45 0 * * * * 0 * 6854 0 1000 F 46 4615 * * * 5693 * 6086 6782 * 5126 4768 * 325 * * 5712 6199 6497 * 6854 46 0 * * * * * * 7090 0 0 F 47 5859 * * 5827 2995 6470 5724 2032 6781 2657 4075 4884 * 5525 * 4547 3407 3231 * 4690 47 0 * * * * * * 7090 0 0 C 48 * 38 5279 * * * * * * * * * * * * * * * * * 48 13 6822 * 3322 152 * * 7090 1000 0 K 49 5128 * 5631 6635 * 5959 5772 * 2382 6586 * 3903 * 4324 860 5262 * * 6556 * 49 0 * * * * * * 6995 0 0 T 50 4121 4638 5621 3639 5108 4306 5461 4621 3179 5766 5083 6445 6436 2695 4263 3820 2932 4068 * 6699 50 0 * * * * * * 7094 0 0 T 51 5318 6042 3232 3021 5850 6658 6443 4435 3473 4929 5439 3979 2542 6543 4080 3728 3785 4436 * * 51 47 4969 * 1000 1000 * * 7084 1889 0 I 52 4560 6795 * 6037 5046 * * 992 * 3042 5279 6692 * * * 5552 6402 2353 6118 * 52 0 * * * * * * 7074 0 0 V 53 5042 * 3971 3473 * 5416 5642 4435 3057 3835 6740 3655 4924 3647 4155 3107 3367 4235 * 6368 53 0 * * * * * * 7048 0 0 S 54 5690 6733 2987 4473 * 4407 4561 6730 3173 * 4513 3732 * 2907 2820 2657 5635 5824 * * 54 29 5646 * 2561 268 * * 7026 1600 0 V 55 5356 * 6337 * 6510 5173 * 1953 * 3084 3413 4689 5061 6221 6783 * 3830 1772 * * 55 0 * * * * * * 6951 0 0 E 56 3887 * 4349 2434 6012 * 4810 2531 * 3718 * 4932 4966 5893 6002 3976 5955 2371 * 5162 56 74 4325 * 851 1166 * * 6894 1648 0 D 57 * * 1167 2974 * * 5619 5440 3595 4448 * 4475 4702 4012 * 4017 5436 5314 * * 57 0 * * * * * * 6546 0 0 W 58 4316 * 5438 * 3464 * * 2643 5120 2233 * * * 5201 * 4165 3922 * 2805 2811 58 0 * * * * * * 6174 0 0 E 59 4870 * 4109 1448 * * 4815 * 2865 * * 4813 * 3280 3365 3308 * 4961 * * 59 0 * * * * * * 6070 0 0 K 60 * * 4869 * * * * * 988 * * 3764 * 3643 2082 4713 * 4895 * * 60 0 * * * * * * 6040 0 0 G 61 * * * * * 0 * * * * * * * * * * * * * * 61 0 * * 0 * * * 4421 0 0 //