HHsearch 1.5 NAME c2ma3A_ FAM FILE c2ma3A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2ma3A_.a3m DATE Sat Jan 3 08:11:19 2015 LENG 88 match states, 88 columns in multiple alignment FILT 72 out of 76 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.7 EVD 0.3810 -1.4823 SEQ >ss_dssp CCCCCCCCCCCSSCCCCCCCCCCCHHHHHHHHHHHHHHHHTSCEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEETTEEEEC >sa_dssp EEEEEEEEEEEEEEEEEEEEEEECDCECACCAADDBCEEDECEABBEDABECADEDDECDDECACDBAEDBCEECCAECDDECCADDE >ss_pred CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCEEECC >ss_conf 9887478330100021755889999999999999985114787409999999999859998999999999997296037789706009 >Consensus gxdxEtGxxDidxixtGxsksxrdkxxxixxiIxxlxxxxxxgaxxxevixexaxxxGixxxxvexxIexLkxxGxiyEPxxGxxklV >c2ma3A_ GAMGETGKIDIDKVEGRTPKSERDKFRLLLELIKEYEDDYGGRAPTNILITEMMDRYNVSEEKVEELIRILKDKGAIFEPARGYLKIV >UniRef50_B7FPY7(696-773:791) Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FPY7_PHATR E=4e-09 s/c=0.80 id=19% cov=83% -----TGRIDMDMITTGKSSADRQLEEQITLTLQELFAERRGtRMAVRDVTKQLAEITNatIPHDEVVKALRQMEADGVI----------- >UniRef50_A1RXH4(604-691:693) Replicative DNA helicase Mcm n=7 Tax=Thermoproteales RepID=A1RXH4_THEPD E=6e-16 s/c=0.97 id=22% cov=101% GIDTQTMTIDIDTIMTGQPKSQREKLIAVLDTVKNLVRQNNGEPIKEEDLYSELEKNGIDRNFARKAIEKLLEQGELMQPSPGRISVV >UniRef50_Q5JGW1(725-809:810) DNA replication licensing factor, MCM2/3/5 family n=1 Tax=Thermococcus kodakarensis RepID=Q5JGW1_PYRKO E=2e-10 s/c=0.79 id=23% cov=95% ----ETDQYDLAILEVGVPSDVLDLQERVIGFLREASSWFPNGVPWGTVV-DAMVEKGYPKEKVVQVLRDLMTHGRVAEVEANRLKLV >UniRef50_A9A310(609-695:695) MCM family protein n=5 Tax=Thaumarchaeota RepID=A9A310_NITMS E=4e-12 s/c=0.83 id=25% cov=94% -----TGKVDLGVLQ-GKPRSEVSKMQLFMDILKGLEGDNKIPVEEKAFVKELEKSEKFTEEEARNYIRRMLREASIYESKPGHYNRV >UniRef50_B9ZCI4(625-708:710) MCM family protein n=1 Tax=Natrialba magadii ATCC 43099 RepID=B9ZCI4_NATMA E=5e-12 s/c=0.85 id=22% cov=97% -ATDENGDIDASIWVNGRSQSQAERMKTAEETVDILTEEGSEPVSREALIASLVDD-GISQDKAQRSIKKLCDRGYIYEHKDGLYR-- >UniRef50_Q5JEJ0(837-911:914) DNA replication licensing factor, MCM2/3/5 family n=1 Tax=Thermococcus kodakarensis RepID=Q5JEJ0_PYRKO E=2e-08 s/c=0.80 id=16% cov=86% ----------AGVIWTEEKKRKVDKLWSILKYYEAL-DERGEGVHINDIIEE-AEQQGIERSEVLVLLEDMERANMVEQSKPGFYRL- >UniRef50_B5IT25(434-497:500) Putative uncharacterized protein n=1 Tax=Thermococcus barophilus MP RepID=B5IT25_9EURY E=2e-08 s/c=0.94 id=20% cov=74% ------------------------RANTALNIFMDLEATSLDGTVSREEFYTALLEYGFKEAYAKEIIERLIAEGHLYEPFFGKLKMI >UniRef50_B1L6L9(618-703:703) MCM family protein n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L6L9_KORCO E=1e-09 s/c=0.75 id=18% cov=95% -----SGHFDITGWMTGISFPEVKRREVVFQIIKQLAEGSEDGlVDRDVVVRMAAERLNLKGKEyvIEDILRKLNEDGLIIFPPGGKIRLI >UniRef50_Q5DVG0(683-757:759) MCM/Rep protein n=1 Tax=Sulfolobus neozealandicus RepID=Q5DVG0_9CREN E=2e-07 s/c=0.76 id=22% cov=84% -------------IETGVTQDMMNKMIRILDLIDSFRNSpiNDGCAKFGDILLNAEEQYGMDDDTVTRIINLLREKGQIREVKENCYK-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 3420 0 0 A 2 1653 * * * * * * 2866 * * 3322 * * * * * * 1169 * * 2 0 * * * * * * 4137 0 0 M 3 * * 596 * * * * * * * 2306 * * * * 3993 3765 * * * 3 0 * * * * * * 4181 0 0 G 4 4513 * 3026 * * 3260 * * * * 3646 4427 1563 4350 * 3073 3375 * * * 4 0 * * * * * * 4214 0 0 E 5 * * 5404 133 * * * * * * * * * 4971 * 4939 * * * * 5 0 * * * * * * 4848 0 0 T 6 * * 3897 3995 * * * * * * * 4168 * * * 2095 785 * * * 6 0 * * * * * * 5255 0 0 G 7 * * 4819 * * 125 * * 5387 * 5394 * * * * * * * * * 7 0 * * * * * * 5255 0 0 K 8 5478 * 4872 2865 * * 5113 4222 2558 * * 4406 * 2878 3077 3753 3866 3193 * * 8 0 * * * * * * 5255 0 0 I 9 * * 5231 * 2049 * * 1584 * 2122 4755 * 5278 * * * * 4414 * 4087 9 0 * * * * * * 5255 0 0 D 10 * * 0 * * * * * * * * * * * * * * * * * 10 37 * 5298 * * * * 5334 0 0 I 11 1943 * * * 5521 * * 1191 * 3675 4632 * * * * * 5922 3325 6205 4980 11 0 * * * * * 0 5337 0 1000 D 12 4836 * 541 4980 * 3669 * * * * * * * * * 3458 3709 * * * 12 0 * * * * * 0 5337 0 1000 K 13 * * * * * 5156 * 1778 1923 5803 5223 * * * 5253 * 3807 2214 5922 4564 13 0 * * * * * 0 5337 0 1000 V 14 4584 * * * * * * 1488 * 1934 * * * * 5612 * * 2117 4116 4990 14 75 * 4305 * * * 0 5387 0 1000 E 15 3685 * * 1325 6264 * * 4126 * 6160 2742 * * 4607 * 5271 3862 3597 5006 4654 15 155 * 3293 * * 484 1811 5370 0 2171 G 16 6507 * * * * 3976 * 4925 * 3879 * 4952 * 6065 * 2609 994 3165 * * 16 0 * * * * 0 * 5319 0 2912 R 17 * * * 5133 * 157 * * 5578 * * * * * 4954 5564 * * * * 17 0 * * * * * * 5436 0 0 T 18 5578 * 5026 5133 * 5400 6291 3242 2213 * 6032 * * 3543 5090 5642 2060 2542 * * 18 0 * * * * * * 5436 0 0 P 19 6324 * * * * * 5676 * 5133 * * * 2024 * * 833 3298 5026 * * 19 0 * * * * * * 5436 0 0 K 20 3015 * * * 5202 * * * 1166 * 5569 * * 4221 2838 2403 * * * * 20 0 * * * * * * 5436 0 0 S 21 5302 * 3660 * * 5446 * * 3715 * * 5325 5202 * 3606 896 3187 6043 * * 21 0 * * * * * * 5436 0 0 E 22 4440 * 4017 2692 * 5426 * * 2051 * 5365 * * 1542 5008 * 5361 4330 * * 22 0 * * * * * * 5436 0 0 R 23 5090 * * * * * * 3929 * 3863 5365 * * 4735 580 * * 3247 * * 23 45 * 5022 * * * * 5436 0 0 D 24 5469 * 1206 2334 * * * * 4416 * 6525 2763 * 4356 * 4268 5492 5813 * * 24 0 * * * * * 0 5370 0 1000 K 25 * * * 5557 * * 6533 4666 1084 2990 5491 * * * 1908 * 5334 5836 * * 25 0 * * * * * 0 5407 0 1000 F 26 4825 * * 4153 5934 * * 1904 5629 2913 2207 * * 3885 3338 5912 * 3792 * * 26 0 * * * * * 0 5407 0 1000 R 27 4897 * 3523 2136 5399 * * 4455 2341 4763 5181 4821 * 4822 3144 5125 3984 5911 5129 * 27 0 * * * * * 0 5407 0 1000 L 28 4151 * * 4657 * * 6533 3834 2947 3936 4730 3394 * 4620 2781 3566 2906 4483 * 4425 28 0 * * * * 0 * 5407 0 1000 L 29 3777 * * * 3947 * * 1662 * 2320 * * * * * * * 1532 * * 29 0 * * * * * * 5555 0 0 L 30 6625 * * 4521 5474 * * 3557 2028 1560 4095 * * * 4121 5906 5503 4207 * 4452 30 0 * * * * * * 5788 0 0 E 31 5077 * 2090 1918 * 4011 5318 * 3486 5503 * 3012 * 3740 5497 4273 * * * * 31 26 * 5825 * * * * 5788 0 0 L 32 4000 * * * 3586 * * 1003 * 2891 * * * * * * 3050 3836 * 5067 32 0 * * * * * 0 5771 0 1000 I 33 * * * * 3931 * * 646 * 3431 4382 * * * * * * 3001 * 5067 33 0 * * * * 0 * 5771 0 1000 K 34 4429 * 3401 1889 5740 6690 * * 1689 5825 5955 * * 4378 2944 4693 * * * * 34 61 4598 * 0 * * * 5788 1652 0 E 35 4598 * 2243 1591 * 5267 * 4521 3504 * * 4110 * 3680 5740 3627 5480 * * * 35 57 * 4682 * * * * 5788 0 0 Y 36 5307 5797 * * 5243 * * 2424 4692 770 6023 * * * * * * 3961 * 4661 36 45 * 5036 * * 0 * 5743 0 1657 E 37 3363 * 3750 1894 4622 * * 5428 5617 4737 * 5410 * 3455 5241 2084 5229 4872 * * 37 0 * * * * 0 * 5709 0 1000 D 38 3198 * 2595 2157 * 3372 5674 * 4685 5820 * 3607 6386 5454 5038 2988 5152 5202 * * 38 72 * 4366 * * * * 5771 0 0 D 39 4609 * 2505 1703 * 3984 * * 3624 4334 5336 * * 5054 * 3437 3186 * 5331 * 39 94 5243 4761 1000 1000 * 0 5719 1000 1386 Y 40 * 5786 5616 6092 4361 4372 4638 * * * * 3392 5135 * 2960 1832 3553 4433 * 2786 40 31 * 5540 * * 0 * 5959 0 2477 G 41 * * 2143 2420 * 2292 * * 3411 4871 4454 5680 4118 6507 5436 3664 * 5739 * * 41 36 * 5357 * * * 0 5972 0 1000 G 42 6380 5694 1893 2378 6471 1999 * 5146 4658 5990 * 4567 * * 6577 5868 4842 * 5581 4775 42 34 5426 * 0 * 1491 635 5987 1000 2043 R 43 4132 4247 * 5071 * 938 * 3894 5472 * * 5868 4348 5913 3631 4342 * 4797 * * 43 91 4030 * 0 * 886 1124 5983 2216 1544 A 44 1095 5485 * 4434 * * * 5477 6017 3721 5436 * 4632 * * 5740 4931 2091 * * 44 0 * * * * * 0 5972 0 1000 P 45 3061 * 3819 4456 * 5477 4358 4709 3579 * * * 1881 5505 5918 3542 * 2837 * 4850 45 0 * * * * * 0 5972 0 1000 T 46 5772 * * 2729 5416 5728 * 3304 3688 4415 * * 4492 * 2688 4280 3749 2393 5344 5476 46 0 * * * * * 0 5972 0 1000 N 47 * * 2266 1792 5728 4380 6317 * 3236 5485 5333 4005 * 4697 3224 4928 5066 * * * 47 20 * 6174 * * * 0 5972 0 1000 I 48 3423 * 2524 1278 * * * 3599 6480 5965 * * * 4603 4916 5230 5398 3537 * * 48 32 * 5502 * * * 0 5976 0 1582 L 49 * * 4243 2721 5144 * * 2464 5198 2853 * * * * * * 5848 1311 * * 49 25 * 5853 * * 0 * 5950 0 2208 I 50 * * * * 2941 * * 1314 5053 2361 5249 * * * * * 5738 2617 * 4841 50 309 * 2375 * * * 0 5980 0 1000 T 51 3118 * 4873 1868 6078 5551 * 4686 2890 3909 * * * 5112 3835 4417 5799 5980 * 3050 51 112 * 3743 * * 0 * 5831 0 3637 E 52 4355 * 3059 1138 * * * 5397 * * 5689 3786 * 5005 3335 4187 3716 * * * 52 217 * 2841 * * 1901 450 5949 0 2419 M 53 1848 * 5283 3385 4503 * * 4776 3703 2822 4695 * * * 2721 * * 3161 * * 53 0 * * * * 0 * 5846 0 3500 M 54 831 * * 3309 * 6354 * 6461 * 3360 3430 * * 6514 * 5868 6539 3566 * * 54 15 * 6599 * * * * 6011 0 0 D 55 4083 * 3220 1643 * 5019 6313 * 2736 3639 5068 4687 * 5193 * 4538 6501 3480 * * 55 0 * * * * 0 * 5927 0 1000 R 56 3977 * 4443 1606 * * * 4908 2491 * * 5319 * 3020 2885 3898 * * * * 56 84 5778 4717 0 * * * 6011 1000 0 Y 57 3856 * * 3424 6565 4623 4004 3984 3067 3362 5355 5627 * 3616 4216 5389 4082 4321 * 2927 57 0 * * * * 0 * 5856 0 1710 N 58 * * 5096 * * 336 5801 * 4774 * * 3184 * * 6149 * * * * * 58 27 5763 * 1000 1000 * * 6011 1000 0 V 59 5355 * * 6070 2466 * * 1375 * 3378 3484 * * * * * * 2686 * 4231 59 28 5681 * 0 * * * 6011 1172 0 S 60 5166 * 2064 2573 * 4371 * * 3625 * 6092 5014 3417 * * 2234 3578 * * * 60 0 * * * * * * 6011 0 0 E 61 3639 * 4810 1755 * 4786 4725 5891 1871 * * * 6539 4237 3066 5472 * * * 5800 61 0 * * * * * * 6011 0 0 E 62 3537 * 2170 2576 * 4093 4736 5553 2720 * * 5701 * 5634 5441 2378 * * * * 62 0 * * * * * * 6011 0 0 K 63 4284 * 3601 1714 4464 * 5553 * 1715 4922 * 5221 * 6805 4507 5868 4457 * * 6083 63 26 5794 * 1000 1000 * * 6011 1000 0 V 64 1494 * * * 4889 * * 2955 * 4538 * * * * * * 6062 1237 * * 64 0 * * * * * * 6011 0 0 E 65 6354 * 4089 808 * * * 4542 3525 4880 * 6057 * 5738 3353 * 5575 4596 * * 65 0 * * * * * * 6011 0 0 E 66 6032 * 2820 1974 * 6461 3830 * 2436 * 6354 4290 * 3744 3075 5248 5688 5663 * * 66 0 * * * * * * 6011 0 0 L 67 1933 * 6070 3391 * * * 1971 * 2745 5314 5553 * 5550 * 5738 4208 4079 * 5391 67 0 * * * * * * 6011 0 0 I 68 * * * * * * * 814 * 1481 * * * * * * * 3781 * * 68 0 * * * * * * 6011 0 0 R 69 * * 3833 1397 * 6341 * * 4007 5837 * 3259 * 3779 2752 3922 4570 * * 5372 69 0 * * * * * * 6011 0 0 I 70 4890 * 2536 4095 * * * 6193 1466 5575 6260 4785 * 4908 3614 3985 5931 4244 * 4570 70 0 * * * * * * 6011 0 0 L 71 3958 * * * 4105 * * 6059 * 600 2303 * * * * * * * * * 71 0 * * * * * * 6011 0 0 K 72 * 5738 * 4712 * * * 4596 1376 2090 4392 5794 * * 2568 5891 * 5036 * * 72 0 * * * * * * 6011 0 0 D 73 3114 * 4481 2701 * 5778 * 5891 3147 5800 3455 4948 * 4187 2043 4310 4370 * * * 73 0 * * * * * * 6011 0 0 K 74 3598 * 3096 2808 5901 3681 5446 6675 2942 * * 4787 * 4486 3104 2937 4895 6330 * 5248 74 22 6059 * 0 * * * 6011 1000 0 G 75 4711 * * * * 125 * * * * * 5663 * * * 5306 * * * * 75 0 * * * * * * 6011 0 0 A 76 5141 * 3336 1721 * * 6083 4341 6192 4167 4849 * * 2888 3319 4240 * 4990 * 3618 76 0 * * * * * * 6011 0 0 I 77 5550 3206 * * * * * 1078 * 2404 * * * * * * * 2268 * * 77 0 * * * * * * 6011 0 0 F 78 5466 * 4517 5542 3188 * * 4705 * 4293 4625 * * * 5557 * * * * 618 78 0 * * * * * * 5877 0 0 E 79 * 5497 * 506 4221 * * * * * 5613 4914 * 3651 5639 3909 * * * * 79 0 * * * * * * 5877 0 0 P 80 4448 * 5632 * * * 5692 6043 5389 * * * 414 * 5686 4020 * 4499 * * 80 0 * * * * * * 5851 0 0 A 81 4954 * 4781 3660 5038 4662 * * 1801 6068 6039 5678 5761 5046 2037 3729 4090 5704 * * 81 0 * * * * * * 5851 0 0 R 82 3690 * 3156 5549 4998 5761 5946 3744 5886 * * 4047 2013 4387 4857 3148 3636 * * 4392 82 0 * * * * * * 5851 0 0 G 83 * * 3494 3784 * 417 * * * * * 3927 * * * 5379 * * * * 83 0 * * * * * * 5851 0 0 Y 84 * 3458 * * 3423 * 2901 4057 3288 4215 5769 * * * 2912 5263 3942 3577 * 2844 84 0 * * * * * * 5851 0 0 L 85 * * * * 5803 * * 2627 * 1366 * * * * * * * 4272 4009 1650 85 0 * * * * * * 5851 0 0 K 86 5382 * 5682 * * 4901 * * 1082 * * 5168 * 6302 1447 4522 * * * * 86 0 * * * * * * 5847 0 0 I 87 3842 * * * 4892 * * 3542 3981 1353 5754 * * * 5020 4493 3156 2738 * * 87 0 * * * * * * 5853 0 0 V 88 * * * * * * * 1442 * 3023 5462 * * * * * * 1041 * * 88 0 * * 0 * * * 5578 0 0 //