HHsearch 1.5 NAME c2m7gA_ FAM FILE c2m7gA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2m7gA_.a3m DATE Sat Aug 31 09:35:49 2013 LENG 61 match states, 61 columns in multiple alignment FILT 113 out of 2009 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.8 EVD 0.5077 2.1255 SEQ >ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGGSCSCC >sa_dssp EDEEDEEEDEDEEDEECEECEDEDDDEEEEDEEEECDDDEEEEEEDECEEEDCEEEEEEEE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >ss_conf 9099999999999999999986566899999999999999999999999999737898999 >Consensus FTLiEllvViaIigiLaxiaiPxxxxxxxxaxxxxxxxxlxxixxaxxxyxxxxgxxPxxs >c2m7gA_ FTLIELLIVVAIIGILAAIAIPQFSAYRVKAYNSAASSDLRNLKTALESAFADDQTYPPES >UniRef50_C6M921(20-80:162) Type IV pilin-related protein n=2 Tax=Neisseria sicca ATCC 29256 RepID=C6M921_NEISI E=5e-07 s/c=0.91 id=21% cov=102% FSLSQLVFTIMMVGILTSIAYPSYQKYVENTKLQEVRAAMLENAQFLERFYQKNGSFKQSS >UniRef50_A7BYE1(7-64:257) Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BYE1_9GAMM E=0.0002 s/c=0.81 id=22% cov=97% FTLVEIVVTLMIIGIVMGGILIPMTIQIEHQKFQTTKKRLKTIKKALIVFATNYGHLP--- >UniRef50_C8W156(15-74:319) Putative uncharacterized protein n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W156_DESAS E=8e-05 s/c=0.80 id=24% cov=95% FSLVELVVVIAIMGFLVAMIAPRILGLTDQAKATSADANAQKLESVITTHMSHAGRL---- >UniRef50_B3PGP1(21-81:173) P(-)rp(+) fimbrial protein n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PGP1_CELJU E=0.0003 s/c=0.76 id=24% cov=102% FTLIEMMVVLAIIAIVALMAMPSPDPTLTRKQVSESLELIEDYKGLVAFYHKTTLKFLSDN >UniRef50_C1ZCG8(15-73:245) Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZCG8_PLALI E=3e-12 s/c=1.24 id=23% cov=98% FTALELIVALGVIVALVLFLMPATRRGREAARRTQCRNNLKQIGLALHNYHDQHGVFPP-- >UniRef50_Q8CXD7(8-67:100) Exogenous DNA-binding protein (Competence protein) n=1 Tax=Oceanobacillus iheyensis RepID=Q8CXD7_OCEIH E=9e-06 s/c=0.86 id=24% cov=97% FTLIEMLIVLMVISVLMILIIPNIGEKSEDVHSKGCEALVSVVQAQVDAFLLENGQYP--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * F 1 * * * * 91 * * * * * * * * * * * * * * 4026 1 0 * * * * * * 6771 0 0 T 2 * * * * * * * * 5702 * * * * * * 2377 343 * * * 2 0 * * * * * * 6949 0 0 L 3 6426 * * * 6400 * * 3754 * 320 4321 * * * * * 6451 4656 * * 3 0 * * * * * * 7137 0 0 I 4 6232 5363 * * 6461 * * 1249 * 2505 4525 * * * 5784 5129 4985 2105 * * 4 0 * * * * * * 7137 0 0 E 5 6073 5363 4610 146 * * * * * * * * * 5964 * * * * * * 5 0 * * * * * * 7137 0 0 L 6 5224 6334 * * * * * 2789 * 769 2731 * * * * * * 3669 * * 6 0 * * * * * * 7246 0 0 L 7 4360 6156 * * 4786 * * 2838 * 1461 2198 * * * * 5526 4382 3179 * * 7 0 * * * * * * 7426 0 0 I 8 4396 * * * 4099 * * 1889 * 5129 4424 * * * * 6690 5639 1024 5185 * 8 0 * * * * * * 7419 0 0 V 9 3184 6307 * * 6770 7100 * 4803 * 4996 6293 * * * * 5061 3593 582 * * 9 0 * * * * * * 7419 0 0 V 10 5359 5987 * * * * * 1595 * 1761 2765 * * * * * * 2422 * * 10 0 * * * * * * 7887 0 0 A 11 1271 5792 * * 5351 4323 * 4192 * 4385 3959 * 7148 * * 4299 3812 2343 * * 11 0 * * * * * * 7887 0 0 I 12 6107 * * * 6233 * * 500 * 3572 6659 * * * * * * 2548 * * 12 14 6704 * 1585 585 * * 7887 1000 0 I 13 * * * * * 5890 * 1360 * 1715 3403 * * * * * 5650 2518 * * 13 0 * * * * * * 7879 0 0 G 14 2090 * * * * 846 * 5611 * 5645 * * * * * 2920 * 4781 * * 14 0 * * * * * * 7871 0 0 I 15 4553 * * * 5285 5267 * 1243 * 2549 6551 * * * * 6369 4910 1964 * * 15 9 7359 * 2000 415 * * 7871 1000 0 L 16 * * * * * * * 3122 * 498 3728 * * * * * * 3297 * * 16 0 * * * * * * 7871 0 0 A 17 1233 5701 * * 6602 4799 * 3432 * 4574 3621 * * * * 3290 3722 3118 * * 17 0 * * * * * * 7871 0 0 A 18 1523 * * * 5243 2538 * 6667 * 3999 5024 * * * * 2433 3441 4129 * 5984 18 13 * 6747 * * * * 8001 0 0 I 19 4637 * * * 3509 5396 * 1611 * 2582 3407 * * * * * 4395 2237 * * 19 0 * * * * 0 * 7991 0 1000 A 20 1272 * * * 6447 3723 * 4175 * 3008 * * * * * 4067 4951 2223 6288 * 20 0 * * * * * * 8001 0 0 I 21 3413 * * * 5520 5494 * 1856 * 2077 4420 * * * * * 4563 2671 5984 3521 21 19 6239 * 1585 585 * * 8001 1000 0 P 22 5608 * * * * 5313 6486 6087 * 6631 5895 6548 429 * 6665 3909 5663 4265 * * 22 0 * * * * * * 7996 0 0 Q 23 2578 * * * * 4157 * 5863 3796 3816 5884 3275 6087 4307 3453 2222 4172 4096 * 6486 23 13 6757 * 1585 585 * * 7996 1000 0 F 24 6817 * * * 3025 5765 * 3301 * 2339 4378 * 6113 6739 * 6548 5295 2982 6598 1709 24 13 6807 * 0 * * * 7996 1000 0 S 25 3883 * 6113 4893 7745 4265 * 3809 5514 3398 4089 4787 4583 2583 4913 3169 3184 3806 * 6664 25 0 * * * * * * 7996 0 0 A 26 4359 * 3641 3838 7043 2819 5145 5389 3800 5140 6503 2981 5506 4113 3306 3148 4926 5386 * 6447 26 0 * * * * * * 7996 0 0 Y 27 2860 6241 * * 4835 5746 4461 3736 5574 3616 6917 4389 * 3181 6374 3519 3803 4091 5606 2681 27 0 * * * * * * 7996 0 0 R 28 4275 * 5221 6623 5898 5513 * 2414 3857 3688 4625 6688 * 3413 2737 3769 4193 3244 6533 * 28 0 * * * * * * 7996 0 0 V 29 3553 6241 3391 2261 * 4165 * 4322 3800 6868 7104 3401 6559 3629 3553 4507 3794 5884 * * 29 0 * * * * * * 7996 0 0 K 30 4528 * 3362 4403 6662 3963 6087 * 2780 5967 * 3651 * 3211 1988 3975 4921 6520 * 6099 30 0 * * * * * * 7996 0 0 A 31 1038 * * 6374 * 3435 * 5795 4825 6640 5649 4367 6241 5320 6395 2767 4364 5615 * 6559 31 0 * * * * * * 7996 0 0 Y 32 4927 * 6775 3529 * 6642 4765 6868 1916 4457 5974 3449 * 3369 2269 4649 6141 4885 * 7371 32 14 * 6687 * * * * 7996 0 0 N 33 4450 * 3732 3749 4850 6631 * 4415 3734 3465 6704 3846 6659 4992 2677 4554 4462 2884 * 4410 33 0 * * * * 0 * 7985 0 1000 S 34 2752 * 5293 5285 * 5627 * 4690 3120 5577 5981 4835 * 3769 5029 2450 2404 3668 * * 34 7 * 7609 * * * * 7996 0 0 A 35 2948 * 5059 2646 * 4543 * 5426 3510 4665 * 5101 * 3310 4112 3263 3134 3618 * * 35 12 6896 * 3000 193 * 0 8000 1000 1000 A 36 1556 2517 5061 6584 * 4599 6682 4884 * 3242 4999 6752 * * 5780 4349 4582 3256 * * 36 0 * * * * * 0 8000 0 1000 S 37 3546 6759 4447 4023 * 6284 6409 4100 2656 3788 4042 5802 * 4357 2637 4857 4828 3345 6722 5802 37 0 * * * * 0 * 8000 0 1000 S 38 2514 * 4635 4861 * 4200 * 6726 5407 5227 4952 2475 6225 3477 5868 2754 3277 4588 * 6563 38 0 * * * * * * 7996 0 0 D 39 3599 * 2973 3480 4925 5718 7210 4870 6763 3723 5267 2195 * 3485 5320 3899 4136 4641 * * 39 0 * * * * * * 7996 0 0 L 40 3045 * * * 6775 5618 * 2720 5791 1536 2989 6899 * 6048 6375 4379 6395 3280 6589 * 40 40 5207 * 770 1273 * * 7996 2134 0 R 41 3123 * 6839 5190 6897 4676 7042 * 2380 4226 6201 3557 7068 2818 2645 3404 5251 5640 * * 41 0 * * * * * * 7996 0 0 N 42 3409 * 4104 2811 * 5131 6375 6589 4883 5067 5447 4548 5920 2642 3964 3111 3301 3901 * * 42 15 6559 * 0 * * * 7996 1000 0 L 43 4254 5200 6412 * 4762 * * 1814 * 1873 3736 4918 * * * 6672 4705 2801 * 6113 43 0 * * * * * * 7996 0 0 K 44 2817 * 5194 4017 4627 3916 6687 5488 3390 4184 6090 4893 6565 3145 3166 4248 4689 4118 * 4395 44 0 * * * * * * 7996 0 0 T 45 3496 * 3361 5034 6623 4298 5078 5971 4136 3637 5773 3622 * 3151 5565 3227 2531 5749 * 6956 45 0 * * * * * * 7996 0 0 A 46 1054 * 5941 5152 5664 4673 * 5596 4868 4325 6776 5651 * 4322 4491 3891 6259 4470 6828 4256 46 13 6775 * 0 * * * 7996 1000 0 L 47 3554 5758 * 4902 5306 5792 * 2204 * 2027 4232 * * 3576 5133 5810 5255 2759 * * 47 0 * * * * * * 7996 0 0 E 48 3537 * 3192 2511 * 6559 5774 4565 4063 4265 5572 4638 * 2870 3583 3900 4417 4588 * 6755 48 0 * * * * * * 7996 0 0 S 49 2565 * 5345 4371 6113 5704 6102 4482 6666 3652 3360 4132 * 5396 2952 2906 4425 3501 * * 49 26 5803 * 2495 282 * * 7996 1651 0 A 50 3026 6412 6290 6835 2773 * 4128 6503 * 5955 6672 * * 6565 5650 5803 7003 6836 5123 972 50 17 6395 * 645 1471 * * 7996 1652 0 F 51 2478 6372 * 5936 3869 6748 4082 4615 3938 4351 4499 5824 * 4108 3779 5296 4896 4490 * 2293 51 0 * * * * * * 7995 0 0 A 52 2982 * 4609 3996 6827 4897 7625 4291 4816 2779 3825 4483 * 3725 5087 3389 3296 4593 6235 5809 52 32 6280 6827 1000 1000 * * 7995 1000 0 D 53 3639 * 2220 3047 * 6801 6219 6146 4048 6088 * 4046 * 3087 3945 4047 3008 5148 * 5938 53 0 * * * * 0 * 7987 0 1000 D 54 5679 * 5154 4290 5879 4798 2878 6829 4323 6390 6810 1801 6265 4571 * 4253 3294 6608 5377 3295 54 0 * * * * * * 7990 0 0 Q 55 5965 * 3675 5126 6346 1154 6636 * 4644 6036 * 3220 6323 3475 4369 4184 5785 6712 * 6733 55 30 6583 6653 0 * * * 7961 1000 0 T 56 4083 6658 4206 4366 4886 3783 5247 5423 2799 5265 6710 4070 * 5197 3196 3551 2716 4969 * 5172 56 42 5952 6330 3324 152 * 0 7921 1072 1000 Y 57 4934 6308 * * 2419 * * 5235 4976 2819 5344 * * 6976 5158 6132 4392 6164 4570 1362 57 21 6085 * 0 * 0 * 7764 1000 1741 P 58 5115 5842 5712 * 4885 * 6032 * 5174 3780 * * 464 * * * 4905 * 5963 6550 58 0 * * * * * * 7473 0 0 P 59 4405 * 5470 5651 * 5602 * * 5945 * * 5403 1049 2388 * 3217 3879 * * * 59 0 * * * * * * 7051 0 0 E 60 4458 * 2155 3026 5672 3202 * * 5160 * * 3765 5581 4223 * 2196 3562 * * * 60 0 * * * * * * 6714 0 0 S 61 1907 * * * * * * * * * * 2396 * * * 1099 3709 * * * 61 0 * * 0 * * * 6294 0 0 //