HHsearch 1.5 NAME c2m6oA_ FAM FILE c2m6oA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2m6oA_.a3m DATE Sat May 11 08:23:18 2013 LENG 48 match states, 48 columns in multiple alignment FILT 18 out of 22 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.1 EVD 0.4637 2.4080 SEQ >ss_dssp CCEEEEETTSCEEEECCCTTSCCCSEEECSSSSSEEEEESCSSSTTCC >sa_dssp ECACABBEEEDEBECECDDECEBCEDDEBDEEDCEAEBCDDECCBEDE >ss_pred CCCCEECCCCCEEEEEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCC >ss_conf 966158889978996420247789811364348713433777852369 >Consensus QxVxYxcxxGhxxxxxFaxeAeiPxxWxCxxcGxxAxxxxgxxpexxk >c2m6oA_ QAVEYACEKGHRFEMPFSVEAEIPPEWECKVCGAQALLVDGDGPEEKK >UniRef50_A4FBM8(13-60:97) Electron transport protein n=2 Tax=Actinomycetales RepID=A4FBM8_SACEN E=8e-12 s/c=1.49 id=31% cov=102% KRVDYWCANGHHTRPSFALDADVPEQWDCPRCGLPAGQDEQNPPEARR >UniRef50_D2NTA4(43-92:127) Uncharacterized protein conserved in archaea n=2 Tax=Rothia mucilaginosa RepID=D2NTA4_9MICC E=1e-07 s/c=1.15 id=48% cov=100% QRVEYRTADGDRVFVTFAAEAEIPSVWTAK-SGKEAYLVNGDstaDAEEEK >UniRef50_D1S6I0(31-61:114) Putative uncharacterized protein n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1S6I0_9ACTO E=0.0006 s/c=1.47 id=50% cov=67% --VVYWCRHGHRVEFLIAAEAETPAAWECPRCG--------------- >UniRef50_C8NNR5(18-63:120) Membrane-associated GTPase n=8 Tax=Corynebacterium RepID=C8NNR5_COREF E=0.0009 s/c=0.97 id=47% cov=98% QLVKYRTDDGEIYEVPFADDAEIPEEWMCKN-GKLGTLVEGEGVESK- >UniRef50_Q6A8E3(28-75:110) Conserved protein n=71 Tax=Actinomycetales RepID=Q6A8E3_PROAC E=2e-12 s/c=1.53 id=51% cov=102% QQIGFDCQNGHHFELTFSTEAELPSLWECPRCGAEALRSDGTDPQRKK >UniRef50_D0YSW9(28-75:113) Electron transport protein n=8 Tax=Actinobacteridae RepID=D0YSW9_9ACTO E=3e-12 s/c=1.52 id=37% cov=102% QTVDYTCPAGHTFDVTFAIDAKVPDVWDCPQCSQKALRVGAEDFAEEK >UniRef50_B8H7M8(37-79:131) Electron transport protein n=2 Tax=Actinomycetales RepID=B8H7M8_ARTCA E=3e-09 s/c=1.46 id=38% cov=88% -RVSYWCAKGHVTEPVFLQlpDVQIPAVWDCRRCGAPASRDGSE------ >UniRef50_A1A1L7(29-74:115) Putative uncharacterized protein n=20 Tax=Bifidobacteriaceae RepID=A1A1L7_BIFAA E=1e-08 s/c=1.33 id=45% cov=98% -DVAYVCPKGHRTILPFAEGAEFPDEWEC-RCGAVAHREGDNDDEADE >UniRef50_A1SJQ3(30-77:119) Electron transport protein n=41 Tax=Actinobacteria (class) RepID=A1SJQ3_NOCSJ E=5e-11 s/c=1.44 id=43% cov=102% QAVTYFCAHEHRSVVTFSVEAQVPDSWDCPKCGLPASLDSENPPPAPK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Q 1 * * * * * * * * 3620 * * * * 254 3641 * * * * * 1 0 * * * * * * 2952 0 0 A 2 3125 * 3000 * * * * * * 3608 * 3969 * 2907 1257 * 3994 * * * 2 0 * * * * * * 3172 0 0 V 3 * * * * * * * 3097 * * * * * * * * * 179 * * 3 0 * * * * * * 3116 0 0 E 4 4059 * 2555 1848 * 3120 * * 3581 * * * 4246 * * 3012 4060 4134 * * 4 0 * * * * * * 3116 0 0 Y 5 * * * * 3137 * * * * * * * * * * * * * * 174 5 0 * * * * * * 3086 0 0 A 6 4580 * 4021 * 4090 * * * * * * * * * 1572 * 3149 3186 1843 * 6 0 * * * * * * 3086 0 0 C 7 * 377 * * * * * * * * * * * * * * 2119 * * * 7 0 * * * * * * 3086 0 0 E 8 1337 * 3970 3343 * * * * * * * * 1631 4021 4120 * * * * * 8 0 * * * * * * 3086 0 0 K 9 4090 * 2081 4210 * * 3105 * 2168 * * 2644 * 3299 * 4304 * * * * 9 0 * * * * * * 3086 0 0 G 10 * * * 3179 * 169 * * * * * * * * * * * * * * 10 0 * * * * * * 3086 0 0 H 11 * * 4082 2547 * * 488 * 4139 * * * * * * * * * * * 11 0 * * * * * * 3086 0 0 R 12 4210 * * 2583 * * 3207 3970 * * * * * 4139 1613 4141 4090 3213 * * 12 0 * * * * * * 3086 0 0 F 13 * * * * 1442 * * * * * * * * * * 4090 1839 2120 * 3970 13 0 * * * * * * 3086 0 0 E 14 * * 3149 1388 3110 * * 4103 * * * * * 4263 3159 4141 * 3179 * * 14 0 * * * * * * 3086 0 0 M 15 * * * * 4120 * * 2697 * 3062 3419 * 2563 * * * * 1301 * * 15 0 * * * * * * 3086 0 0 P 16 * * * * * * * * * 4120 4141 * 1643 * * 3339 1538 3029 * * 16 0 * * * * * * 3086 0 0 F 17 * * * * 163 * * 4120 * * 4336 * * * * * * * * * 17 0 * * * * * * 3086 0 0 S 18 703 * * * * * * 3937 * 4127 * * * * * 1925 * * * * 18 0 * * * * * * 3086 0 0 V 19 2120 * 3127 4103 * * * 3149 3937 4420 * * * 4127 * 4263 4021 2309 * * 19 189 3029 * 1000 1000 * * 3086 1183 0 E 20 * * 1384 840 * 4103 * * * * * * * * * * * * * * 20 0 * * * * * * 3086 0 0 A 21 189 * 3937 * * * * * * * * * * * * * * 4127 * * 21 0 * * * * * * 3086 0 0 E 22 * * 2757 708 * * * * 4090 * * * * 2464 * * * * * * 22 0 * * * * * * 3086 0 0 I 23 * * * * 4103 * * 1148 * 4021 * * * * * * 4120 1429 * * 23 0 * * * * * * 3086 0 0 P 24 * * * * * * * * * * * * 0 * * * * * * * 24 0 * * * * * * 3086 0 0 P 25 2606 * 2123 2229 * * * * * * * * 2688 * * 2537 * 3937 * * 25 0 * * * * * * 3086 0 0 E 26 4120 * * 2221 * * * * * 3137 * * * 4420 * 4090 3242 1310 * * 26 0 * * * * * * 3086 0 0 W 27 * * * * * * * * * * * * * * * * * * 0 * 27 0 * * * * * * 3086 0 0 E 28 * * 1348 1642 * * * * * * 3970 * 4304 * * * 3111 4139 * * 28 0 * * * * * * 3086 0 0 C 29 4082 273 * * * * * * * * * * * * * 4139 4141 * * * 29 86 * 4103 * * * * 3086 0 0 K 30 * * * * * * * * 1315 * * * 1094 * 2950 * * * * * 30 285 * 2478 * * 0 * 3040 0 1000 V 31 * * * * * * * 3962 3883 * * 2681 * 3866 931 * * 3069 * * 31 245 * 2681 * * 0 * 2910 0 1290 C 32 * 329 * * * * * * * * * * * * * 3870 2885 * * * 32 0 * * * * 0 * 2980 0 1160 G 33 * * * * * 173 * * * * * * * * * 3149 * * * * 33 0 * * * * * * 3086 0 0 A 34 1491 * * * * 4055 * * 2060 2510 * * * 2567 * * * * * * 34 0 * * * * * * 3195 0 0 Q 35 * * * 1738 * * * * 4053 3943 * * 2083 4461 * * 2142 3901 * * 35 0 * * * * * * 3195 0 0 A 36 180 * * * * 3089 * * * * * * * * * * * * * * 36 0 * * * * * * 3195 0 0 L 37 * * * * * 3188 3901 3162 * 1793 * * * * * 2423 3089 4056 * 4085 37 0 * * * * * * 3195 0 0 L 38 * * * * * * * * * 1142 * * * 3188 1403 4081 * * * * 38 0 * * * * * * 3195 0 0 V 39 * * 1938 3796 * * * 4160 * * * 3992 * * * 3823 * 1066 * * 39 0 * * * * * * 3183 0 0 D 40 * * 2528 2473 * 1867 * * * * * 2472 * 4066 * 2917 * * * * 40 0 * * * * * * 3183 0 0 G 41 2431 * 3796 3874 * 885 * * * * * * * 4142 * 3711 * * * * 41 0 * * * * * * 3183 0 0 D 42 3123 * 3165 1178 * * * 3961 * * * 2345 * * * * 3823 * * * 42 103 3855 * 1585 585 * * 3183 1000 0 G 43 * * 1498 * * 2446 * * 3010 * * * 1900 3826 * * * * * * 43 0 * * * * * * 3117 0 0 P 44 3896 * 3690 * 2895 * * * * * * * 763 * * * * 2927 * * 44 0 * * * * * * 3117 0 0 E 45 3701 * * 584 * * * * * * * * 3452 2603 * * * * * * 45 0 * * * * * * 3076 0 0 E 46 1491 * * 1348 * * * * * * * * * * 3413 2667 * * * * 46 0 * * * * * * 3014 0 0 K 47 * * 3511 1936 * * * * 1108 * * * 3389 * 3450 * * * * * 47 0 * * * * * * 3014 0 0 K 48 * * * 2877 * * * * 476 * * * * * 2786 * * * * * 48 0 * * 0 * * * 2691 0 0 //