HHsearch 1.5 NAME c2m6nA_ FAM FILE c2m6nA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2m6nA_.a3m DATE Sat Jun 8 09:12:57 2013 LENG 46 match states, 46 columns in multiple alignment FILT 16 out of 20 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.7 EVD 0.5082 2.7432 SEQ >ss_dssp CCEECTTTCCEEEEETTTTEEEECCTTCCCEEETTTSSBCCCSSCC >sa_dssp EECDAEEDEBEADCDEEEDCACBEEEECECCABBEEDDEBEDEEED >ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHCCHHHCCCCC >ss_conf 9733777788200162642125376545535676530011068899 >Consensus sLkxCxRCxsPAkxxxxxxraxCtrxxCxFdFCtxCxcaxHxsxxC >c2m6nA_ SLKACIRCNSPAKYDCYLQRATCKREGCGFDYCTKCLCNYHTTKDC >UniRef50_UPI0000ECC82E(261-306:334) F-box only protein 5 (Early mitotic inhibitor 1). n=3 Tax=Gallus gallus RepID=UPI0000ECC82E E=2e-13 s/c=1.67 id=68% cov=102% SFKVCSRCGSPAKYDSYLQRAMCNRESCGFDFCTKCMCSYHSSSDC >UniRef50_C3ZY88(1028-1072:1107) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3ZY88_BRAFL E=5e-05 s/c=1.09 id=46% cov=100% -LTPCIRCRSPAHVIPKNHRATCQQDSCKFDYCLHCNCAFHGDVPC >UniRef50_Q7SYI4(483-527:557) Zgc:66488 n=4 Tax=Danio rerio RepID=Q7SYI4_DANRE E=3e-12 s/c=1.62 id=41% cov=100% -LKACPRCQHPAVCHPVRAEGVCSWSDCSFRFCTACLCALHGSRDC >UniRef50_Q90Z80(319-364:392) F-box only protein 5-A n=6 Tax=Xenopus RepID=FBX5A_XENLA E=7e-11 s/c=1.49 id=55% cov=102% SLKVCVDCGSPAKHDPCLHRAICTRESCKLDFCTRCSCKYHFSKSC >UniRef50_UPI00017B2889(308-353:384) UPI00017B2889 related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B2889 E=1e-10 s/c=1.46 id=51% cov=102% SLRPCRRCGSPAKHSAEAQRATCTRPGCLFDFCTRCQEAFHSSTPC >UniRef50_Q0V967(311-356:384) F-box only protein 5 n=8 Tax=Danio rerio RepID=FBX5_DANRE E=2e-10 s/c=1.45 id=45% cov=102% SLRRCSRCSSPARFDAVMQRAVCTRISCAFEFCTLCQSAFHDSTPC >UniRef50_D2XMR8(215-260:287) Early mitotic inhibitor-like protein (Fragment) n=1 Tax=Saccoglossus kowalevskii RepID=D2XMR8_SACKO E=3e-06 s/c=1.15 id=47% cov=102% TLTKCPLCESPARVLRAEQRATCTREACSNDFCTKCHTPAHGSKKC >UniRef50_UPI000186E804(153-197:229) F-box only protein, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E804 E=0.0002 s/c=1.04 id=30% cov=100% -LTPCPRCSLPSNVNDDENSGHCTQPFCSFHFCLQCQCAYHYGTTC >UniRef50_UPI000194C014(598-643:670) PREDICTED: similar to F-box protein 43 n=1 Tax=Taeniopygia guttata RepID=UPI000194C014 E=4e-14 s/c=1.72 id=45% cov=102% ALKPCPRCQYPAKYQLVKKRGLCSRESCAFEFCILCLHAFHGSKEC # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 2071 * * * * * * * * * * * * * * 664 2932 * * * 1 0 * * * * * * 2295 0 0 L 2 * * * * 4200 * * * * 81 * * * * * * * * * * 2 0 * * * * * * 2758 0 0 K 3 * * * * * * * * 830 * * * * * 2598 * 1877 * * * 3 0 * * * * * * 2758 0 0 A 4 2112 * * * * * * * 3537 * * * 1009 * 4002 * * 3021 * * 4 0 * * * * * * 2758 0 0 C 5 * 0 * * * * * * * * * * * * * * * * * * 5 0 * * * * * * 2758 0 0 I 6 * * * * * * 4530 2886 4243 * * * 1077 * 4325 3098 * 2967 * * 6 0 * * * * * * 2758 0 0 R 7 * * 3862 * * * * * * 3537 * * * * 243 * * * * * 7 0 * * * * * * 2758 0 0 C 8 * 0 * * * * * * * * * * * * * * * * * * 8 0 * * * * * * 2758 0 0 N 9 * * * 3537 * 1893 * * * * * 3140 * 1822 3627 2577 * * * * 9 0 * * * * * * 2758 0 0 S 10 * * * * 4082 * 2908 * * 3249 * * * * * 733 * * * 3308 10 0 * * * * * * 2758 0 0 P 11 * * * * * * * * * * * * 0 * * * * * * * 11 0 * * * * * * 2758 0 0 A 12 160 * * * * * * * * * * * * * * 3249 * * * * 12 0 * * * * * * 2758 0 0 K 13 * * * * * * 3627 * 910 * * 3249 * * 2271 * * 3744 * * 13 0 * * * * * * 2758 0 0 Y 14 * 2908 * * 4002 * 2544 * * * * * * * * * * 1877 * 1471 14 0 * * * * * * 2758 0 0 D 15 * * 1547 * * * 2908 3627 * 3537 * 3249 * 2742 * 3283 * * * * 15 0 * * * * * * 2758 0 0 C 16 2225 4201 3249 * * * 4082 * * 4258 * * 1873 * 3537 2678 * * * * 16 0 * * * * * * 2758 0 0 Y 17 3537 3862 3249 3283 * * * * 3627 4360 * * * * * * * 2012 * 1945 17 0 * * * * * * 2758 0 0 L 18 3283 * * 2386 * * * * 2264 1837 4002 3627 * * 3744 * * * * * 18 0 * * * * * * 2758 0 0 Q 19 3744 * * 4082 * 4093 2740 * 2742 * * 3249 * 1310 * * * * * * 19 0 * * * * * * 2758 0 0 R 20 * * * 2908 * * * * * * * * * * 393 3249 * * * * 20 0 * * * * * * 2758 0 0 A 21 708 * * * * 1366 * * * * * * * * * * * * * * 21 0 * * * * * * 2758 0 0 T 22 * * * * * * 3249 2973 * 3310 3221 * * * * * 1461 2350 * * 22 0 * * * * * * 2758 0 0 C 23 * 0 * * * * * * * * * * * * * * * * * * 23 0 * * * * * * 2758 0 0 K 24 * * * * * * * * 3140 * * 3356 * 3627 * 1822 1234 * * * 24 0 * * * * * * 2758 0 0 R 25 * * * * * * * * * * * * * 2426 436 * * * 3744 * 25 0 * * * * * * 2758 0 0 E 26 4093 * 3627 1257 * * * 4002 4360 4243 * * 2689 * * 3744 4364 * * * 26 0 * * * * * * 2758 0 0 G 27 2892 * 2459 * 3249 3261 * * * * * * * * * 1077 * * * * 27 0 * * * * * * 2758 0 0 C 28 * 0 * * * * * * * * * * * * * * * * * * 28 0 * * * * * * 2758 0 0 G 29 3125 * * * * 1699 * * 2260 3283 * * * * * 1911 * * * * 29 0 * * * * * * 2758 0 0 F 30 * * * * 243 * * * * 3862 * 3537 * * * * * * * * 30 0 * * * * * * 2758 0 0 D 31 * * 766 2525 * * 3249 * * * * * * 4093 3744 * * * * * 31 0 * * * * * * 2758 0 0 Y 32 * * * * 312 * * * * * * * * * * * * * * 2363 32 0 * * * * * * 2758 0 0 C 33 * 0 * * * * * * * * * * * * * * * * * * 33 0 * * * * * * 2758 0 0 T 34 * * * * * * * 4258 * 2426 * * * * * 4360 590 4364 * * 34 0 * * * * * * 2758 0 0 K 35 2908 * * * * * 3627 * 1750 2238 * * * 3249 2544 * * * * * 35 0 * * * * * * 2758 0 0 C 36 * 0 * * * * * * * * * * * * * * * * * * 36 0 * * * * * * 2758 0 0 L 37 * * * * * * 3537 * * 1336 3356 3627 * 1887 * 3862 * * * * 37 0 * * * * * * 2758 0 0 C 38 * 522 * 3283 * * 4258 * * * * * * * * 4002 3537 * * * 38 0 * * * * * * 2758 0 0 N 39 908 4243 * * * * * * 3862 * * 4201 3537 * * 3356 3220 * * * 39 0 * * * * * * 2758 0 0 Y 40 3537 * * * 1302 * * * * 3744 * * * * * * * * * 1205 40 0 * * * * * * 2758 0 0 H 41 * * * * * * 0 * * * * * * * * * * * * * 41 0 * * * * * * 2758 0 0 T 42 * * 4002 * 3862 992 * * * * * 4082 * * * 2760 4201 * * 3249 42 0 * * * * * * 2758 0 0 T 43 * * 3627 * * 3249 * * * * * 4082 * * * 514 4201 * * * 43 0 * * * * * * 2758 0 0 K 44 * * * 4364 * * * * 1437 * * * * * 2908 3356 1887 3627 * * 44 0 * * * * * * 2758 0 0 D 45 * * 1807 2264 * * * * 3537 * * * 2023 * * 3862 3249 * * * 45 0 * * * * * * 2758 0 0 C 46 * 0 * * * * * * * * * * * * * * * * * * 46 0 * * 0 * * * 2758 0 0 //