HHsearch 1.5 NAME c2m45A_ FAM FILE c2m45A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2m45A_.a3m DATE Sat Feb 1 08:15:42 2014 LENG 87 match states, 87 columns in multiple alignment FILT 67 out of 71 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.4 EVD 0.3965 -0.5581 SEQ >ss_dssp CCSCCCCCSCCSHHHHTTSCTHHHHHHHHHHHHHHHHHTTSSSEEHHHHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEETTEEEEC >sa_dssp EEEEEEDDEEDEDDCDEDEEEDCDCCBCDACDBADDDBEEDEBADBDCACDDADEEECDDDDADECADDADEEDCADCEDEDBACCE >ss_pred CCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEECCCCCCEECC >ss_conf 987776781334555517339899999999999998520378847999999999859998999999999996296455469706109 >Consensus xxxxxEtGxxDidxixtGxsksxrdkxxxixxiIxxlxxxxxgaxxeeiixxAxexGixxxxvexxIxxLxxxGxIyEPxxGxxkxV >c2m45A_ GSHMGESGKIDIDTIMTGKPKSAREKMMKIIEIIDSLAVSSECAKVKDILKEAQQVGIEKSNIEKLLTDMRKSGIIYEAKPECYKKV >UniRef50_Q3SAC5(600-681:682) DNA replication licensing factor MCM related protein n=1 Tax=uncultured euryarchaeote Alv-FOS1 RepID=Q3SAC5_9EURY E=6e-13 s/c=0.92 id=20% cov=94% -----EDGQPDADILSSGTSSSTRQLIFSIKRFIEEYSAETMDAPYEkEVIEEFMGRNFPKHKIIEAIEKLRRGGEIIRDTRGRLRI- >UniRef50_A9A310(614-695:695) MCM family protein n=5 Tax=Thaumarchaeota RepID=A9A310_NITMS E=1e-09 s/c=0.79 id=27% cov=93% ------TGKVDLGVLQ-GKPRSEVSKMQLFMDILKGLEGDNKiPVEEKAFVKELEKsEKFTEEEARNYIRRMLREASIYESKPGHYNRV >UniRef50_Q5JGW1(723-809:810) DNA replication licensing factor, MCM2/3/5 family n=1 Tax=Thermococcus kodakarensis RepID=Q5JGW1_PYRKO E=1e-09 s/c=0.74 id=16% cov=95% -----ETDQYDLAILEVGVPSDVLDLQERVIGFLREASSWFpNGVPWGTVVDAMVEKGYPKEKVVQVLRDLMTHGRVAEVEANRLKLV >UniRef50_Q9HL43(200-269:272) Putative uncharacterized protein Ta0388 n=2 Tax=Thermoplasma RepID=Q9HL43_THEAC E=5e-08 s/c=0.84 id=24% cov=82% -----------------GSSGAIAEARSMILDYIKNNDLDGKGCRYEDIVVAAKNAGIDQSTVDEILNSLGSLGEIFEVSLKRYKFV >UniRef50_B1L6L9(618-703:703) MCM family protein n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L6L9_KORCO E=2e-06 s/c=0.63 id=24% cov=94% ------SGHFDITGWMTGISFPEVKRREVVFQIIKQLAEGSEDGLVDRdvvVRMAAERLNLKGKEyvIEDILRKLNEDGLIIFPPGGKIRLI >UniRef50_D1J911(629-713:714) Probable minichromosome maintenance protein n=1 Tax=uncultured archaeon RepID=D1J911_9ARCH E=4e-16 s/c=1.01 id=28% cov=95% -----ETGKLDTDWVTVGTTKTRRDRARSIREIIKELENEYgEEVPLEEVLDLAEEEGMERGKAEDIIEVMKRDGLLFSPGSGVIKFV >UniRef50_Q3IPB6(601-668:676) ATP-dependent DNA helicase n=3 Tax=Halobacteriaceae RepID=Q3IPB6_NATPD E=4e-09 s/c=0.92 id=21% cov=77% -----ETGEFDADVVETSQSKSQRTRRKRVLAIIE----DKQGTTVEEVAEIIDE---TEKRVRNDVQSLKNRGQVYE--------- >UniRef50_B6YX83(448-511:512) Putative uncharacterized protein n=1 Tax=Thermococcus onnurineus NA1 RepID=B6YX83_THEON E=0.001 s/c=0.70 id=23% cov=69% ----------------------------KALQIFHDLASTSpnGEVTREEFLREMMRGGFNERDALDMIERFIATGYIYEPFPGKLRLV >UniRef50_B9ZCI4(624-709:710) MCM family protein n=1 Tax=Natrialba magadii ATCC 43099 RepID=B9ZCI4_NATMA E=5e-12 s/c=0.84 id=27% cov=95% ----DENGDIDASIWVNGRSQSQAERMKTAEETVDILTEEgSEPVSREALIASLVDDGISQDKAQRSIKKLCDRGYIYEHKDGLYRK- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1649 0 0 S 2 * * 1628 * * * * * * * * * * * * 564 * * * * 2 0 * * * * * * 2131 0 0 H 3 1628 * * * * * 1539 * * * * * * * * * * * * 1589 3 0 * * * * * * 2131 0 0 M 4 * * 2005 * * * * 3723 * * 1293 * * * * * * 1905 * * 4 0 * * * * * * 3248 0 0 G 5 * * 1055 * * 2265 * * * * * 3348 3227 3243 * * * * * * 5 0 * * * * * * 3501 0 0 E 6 * * 4826 52 * * * * * * * * * * * * * * * * 6 0 * * * * * * 4670 0 0 S 7 * * 3617 3912 * * * * * * * 3998 * * * 2054 866 * * * 7 0 * * * * * * 5077 0 0 G 8 * * 4624 * * 101 * * 5216 * * * * * * * * * * * 8 0 * * * * * * 5077 0 0 K 9 5546 * 4681 2791 * * 4940 4205 2639 * * 4336 * 2840 3350 3639 4338 2934 * * 9 0 * * * * * * 5077 0 0 I 10 * * 4867 * 1987 * * 1872 * 2014 4644 * 4990 * * * * 4137 * 3953 10 0 * * * * * * 5089 0 0 D 11 * * 0 * * * * * * * * * * * * * * * * * 11 48 * 4934 * * * * 5114 0 0 I 12 2019 * * * 5467 * * 1077 * 3488 * * * * * * 5757 3245 6131 5101 12 0 * * * * * 0 5078 0 1000 D 13 4637 * 588 4162 * 4199 * * * * * * * * * 3340 3546 * * * 13 0 * * * * * 0 5078 0 1000 T 14 * * * * * 5006 * 1703 2030 5573 * * * * 5340 * 3635 2124 5801 4529 14 0 * * * * * 0 5140 0 1000 I 15 4547 * * * * * * 1663 5378 1857 * * * * 5691 * * 2109 4001 5176 15 40 * 5210 * * * 0 5190 0 1000 M 16 4415 * * 1278 6284 5412 * 4216 * 5118 2971 * * 4505 5388 5071 4508 3733 5020 4425 16 156 * 3291 * * 666 1436 5333 0 1762 T 17 4616 * * * * 5413 * 4961 5350 4808 * 3997 * 6069 * 2475 1066 3206 * * 17 0 * * * * 0 * 5441 0 2810 G 18 5591 * * 4290 * 175 * * * * * * * * 5603 5516 * * * * 18 0 * * * * * * 5599 0 0 K 19 * * 5198 5118 * 5203 * 2933 2182 * 6227 * * 3653 5190 4578 2051 2626 * * 19 30 * 5591 * * * * 5599 0 0 P 20 6281 * * * * * 5756 * 5087 * * * 2184 5413 * 826 3266 5174 * * 20 0 * * * * 0 * 5586 0 1000 K 21 2949 * * * 5211 5535 * * 1268 * 5815 * * 3749 2648 2690 * * * * 21 0 * * * * * * 5599 0 0 S 22 4539 * 3642 5430 * 5268 * * 3441 * * 5484 5211 * 3648 1033 3264 6182 * * 22 0 * * * * * * 5599 0 0 A 23 4821 * 5203 2845 * 5385 * 5535 1946 * 5394 * * 1665 4270 5430 5229 4257 * * 23 33 * 5485 * * * * 5599 0 0 R 24 4342 * * * * * * 4084 5542 3915 5381 * * 3943 732 * * 3146 * * 24 42 * 5119 * * 0 * 5433 0 1000 E 25 5367 * 1272 2115 * * * * 4422 * * 2637 * 5211 * 4259 5354 5667 * * 25 0 * * * * * 0 5548 0 1000 K 26 5524 * * 5585 * * * 4653 1186 3562 5255 * 5495 * 1988 * 5501 4401 * 5408 26 0 * * * * * 0 5548 0 1000 M 27 5915 * * 5158 * * * 1872 4607 2999 2093 * * 4355 3041 5592 * 3895 * 5408 27 0 * * * * * 0 5548 0 1000 M 28 4571 * 3227 2468 5211 * * 4655 2339 4859 4627 5591 * 4771 3302 3820 4251 5692 5070 * 28 0 * * * * * 0 5548 0 1000 K 29 3636 * * 4525 * * * 3087 2927 4477 4013 3407 * 5569 2823 3523 3227 4440 * 5404 29 0 * * * * 0 * 5669 0 1000 I 30 3984 * * * 4054 * * 1492 * 2250 * * * * * * * 1685 * * 30 0 * * * * * * 5728 0 0 I 31 * * * 4206 5362 * * 3634 2019 1360 4053 * * * 4161 5297 * 5546 * 4585 31 0 * * * * * * 5728 0 0 E 32 4955 * 1908 2016 * 4297 5418 * 3061 * * 3347 * 3276 5203 4995 * * * * 32 0 * * * * * * 5728 0 0 I 33 4130 * * * 3521 * * 1062 * 2981 5250 * * * * * 3988 3514 * 3770 33 58 * 4668 * * * * 5728 0 0 I 34 * * * * 4640 * * 468 * 4223 5269 * * * * * * 2959 * 5113 34 0 * * * * 959 1042 5681 0 1624 D 35 4132 * 3396 1923 5650 6611 5747 5761 1585 * * 5645 * * 2999 4700 * * * * 35 33 * 5488 * * * 0 5698 0 1000 S 36 4601 * 2912 1815 * 5229 * 5288 2879 * * 3301 * 3613 4408 3329 5398 * * * 36 0 * * * * 908 1098 5670 0 1665 L 37 5270 * * 4607 5330 * * 2928 * 784 * 3796 * 4831 * * * 4019 * 5198 37 126 4949 4287 1000 1000 * 0 5672 1576 1000 A 38 3332 * 3358 2161 5689 5224 * 4412 5572 4730 * 5563 * 3911 5308 2132 3784 6150 * * 38 20 6150 * 1000 1000 418 1990 5629 1000 2381 V 39 3278 * 2185 2095 * 3866 5805 * 3909 5501 * 3627 6446 5420 4742 3518 6459 5959 * * 39 102 3874 * 1041 960 0 * 5672 2296 1000 S 40 4778 5610 2278 1907 * 3896 * * 3927 * * 4162 * 6410 4598 3349 4058 4473 5304 * 40 82 4181 * 776 1265 * * 5728 2071 0 S 41 * * 2862 5675 4786 2433 4591 * 3640 * * 5291 * * * 1851 4328 5823 * 2949 41 256 2621 * 440 1927 * * 5728 3183 0 E 42 * * 3138 1453 * 2017 * * 4109 * 5203 4054 5025 5494 * 4732 5404 * * 6094 42 175 3133 * 0 * * * 5728 2776 0 C 43 4483 3387 3382 3577 * 1160 * 4692 4665 3957 * * 3948 * 5312 * * * * * 43 125 3594 * 753 1299 * * 5720 2561 0 A 44 1088 4472 * * * 4400 * 3811 * * * * * * * 5587 5536 1628 * * 44 0 * * * * * * 5720 0 0 K 45 4803 * 6108 3569 * 4682 4704 * 2913 5354 * * 1853 5301 3299 3000 3668 5418 * * 45 0 * * * * * * 5735 0 0 V 46 5730 * * 2580 4576 * 5407 2986 * 3895 5676 * 4543 5934 3728 * * 2119 5310 2783 46 0 * * * * * * 5735 0 0 K 47 4894 * 2178 1334 * 4364 * * 2769 * * 4848 * 5283 5585 4129 * 6061 * * 47 37 5319 * 0 * * * 5749 1000 0 D 48 3761 * 1944 1377 * * * 4517 5091 5453 * 5822 * 4431 4142 * 5273 4687 * * 48 32 5500 * 1585 585 * * 5749 1000 0 I 49 * * * 5383 3399 * * 1447 * 2617 * * * * * * * 1509 * * 49 0 * * * * * * 5749 0 0 L 50 5083 * * 6061 5053 * * 1547 * 2117 4439 * * 5585 4628 5453 * 2933 * 3449 50 45 5822 6245 1000 1000 * * 5749 1000 0 K 51 3571 * 2834 1481 * 5690 * 5286 3300 5464 5455 4325 * * 4584 4248 4642 4601 * * 51 0 * * * * * 0 5821 0 1000 E 52 2875 * 5671 1798 5955 * * 4320 3181 3855 * 5461 * 6452 2617 4866 5596 4087 * * 52 0 * * * * * 0 5750 0 1000 A 53 586 6592 * * 5332 6577 * 5799 * 3121 3598 * * * * 5688 * 4232 * * 53 30 5580 * 0 * 0 * 5748 1137 1000 Q 54 4462 * 4120 1350 * 6586 6087 * 3014 4707 3821 * * 5895 4972 4193 6739 2898 * * 54 86 4118 * 0 * * * 5747 2082 0 Q 55 4286 * 5412 1435 * 5337 * * 2260 * * 3915 * 3309 3142 4594 * * * * 55 123 3971 5805 0 * * * 5747 2324 0 V 56 3324 * 5398 3176 6697 4620 4585 4428 2991 3630 6348 6021 * 3282 3493 4838 6034 4589 * 3189 56 0 * * * * * 0 5718 0 1000 G 57 * * * * * 363 5727 * 3975 * * 3410 * 5594 5303 * * * * * 57 0 * * * * * 0 5579 0 1000 I 58 * * * * 2431 * * 1195 * 3187 3385 * * * * * * 3095 * 4178 58 27 5771 * 0 * 0 * 5579 1159 1000 E 59 6254 * 2193 2467 * 4090 * * 3637 * 5887 4265 3743 * * 2210 3499 * * * 59 0 * * * * * * 5609 0 0 K 60 4222 * 4688 1796 * 4655 5567 5862 1915 * * * 6554 3677 2756 5405 * * * 5941 60 0 * * * * * * 5609 0 0 S 61 4517 * 2410 2330 * 4258 4688 5820 2406 * * 6007 * 5647 5228 2254 * * * * 61 0 * * * * * * 5609 0 0 N 62 4576 * 4141 1822 4567 * 5820 * 1624 4898 * 5871 * 6590 4060 5722 3577 * * 6560 62 34 5421 * 1000 1000 * * 5609 1000 0 I 63 1528 * * * 5567 * * 2935 * 4311 * * * * * * 6094 1197 * * 63 0 * * * * * * 5609 0 0 E 64 6216 * 2896 993 * * * 4081 3815 4591 * 6194 * 5447 3355 * 5514 5502 * * 64 0 * * * * * * 5609 0 0 K 65 * * 3407 1712 * 6536 3757 * 2498 * 6216 4214 * 3745 3152 4667 5567 5393 * * 65 0 * * * * * * 5609 0 0 L 66 2507 * 5752 3369 * * * 1728 * 2988 5062 5820 * 5194 * 5447 3698 3608 * 5385 66 0 * * * * * * 5609 0 0 L 67 * * * * * * * 940 * 1319 * * * * * * * 3680 * * 67 0 * * * * * * 5609 0 0 T 68 * * 3570 1471 * 6098 * * 3707 4922 * 2777 * 4750 2808 4018 5871 * * 5247 68 0 * * * * * * 5609 0 0 D 69 4597 * 2927 3644 * * * * 1508 5514 5659 4910 * 6175 3587 3154 6745 4394 * 4200 69 0 * * * * * * 5609 0 0 M 70 * * * * 3866 * * 5906 * 433 2525 * * * * * * * * * 70 0 * * * * * * 5609 0 0 R 71 * 5447 * 5393 * 4613 * 4654 1437 2320 4303 5421 * 6240 2603 5862 * 4876 * * 71 0 * * * * * * 5609 0 0 K 72 3375 * 4759 2441 * 5935 * 5862 3140 5941 4743 4706 * 4300 2066 3568 3841 * * * 72 0 * * * * * * 5609 0 0 S 73 3515 * 3223 2901 6143 3948 5502 6618 2678 6190 * 5325 * 4129 2891 3517 4688 6669 * 4743 73 24 5906 * 0 * * * 5609 1000 0 G 74 5385 * * * * 109 * * * * * 5393 * * * 5325 * * * * 74 0 * * * * * * 5609 0 0 I 75 5887 * 3257 1572 * * 6560 4184 * 3542 4702 * * 3256 3591 3936 * 5659 * 3656 75 0 * * * * * * 5609 0 0 I 76 5194 3693 * * * * * 1006 * 2459 * * * * * * * 2213 * * 76 0 * * * * * * 5609 0 0 Y 77 5502 * 4750 5393 3189 * * 4449 * 4152 4544 * * * 5514 * * * * 643 77 0 * * * * * * 5609 0 0 E 78 * 5678 * 495 4492 * * * * * 5647 5058 * 3461 5478 3988 * * * * 78 0 * * * * * * 5609 0 0 A 79 4778 * 5454 * * * 5430 5879 5399 * * * 501 * 5581 3989 * 3537 * * 79 0 * * * * * * 5579 0 0 K 80 5695 * 5777 3674 5124 6476 * * 1808 6205 5873 5470 5400 4600 2020 3374 3895 5882 * 6230 80 0 * * * * * * 5579 0 0 P 81 3521 * 4052 5508 5158 5400 6129 3701 * 3843 * 3898 2037 4555 5454 3112 3617 * * 4480 81 0 * * * * * * 5579 0 0 E 82 * * 3615 4778 * 427 * * 4576 * * 3701 * * * 5686 * * * * 82 0 * * * * * * 5579 0 0 C 83 * 3351 * * 3438 * 2850 3977 3070 4135 * * * * 2786 5271 4417 3219 * 3232 83 0 * * * * * * 5571 0 0 Y 84 * * * * 4928 * * 2758 * 1560 * * * * * * * 4304 4526 1373 84 0 * * * * * * 5571 0 0 K 85 4634 * 5520 * * * * * 1011 * * 5273 * * 1415 4610 * * * * 85 0 * * * * * * 5518 0 0 K 86 4487 * * * 4500 * * 4008 3028 1707 6097 * 5179 * 4867 4959 2913 2484 * * 86 0 * * * * * * 5406 0 0 V 87 * * * * * * * 1197 * 3930 * * * * * * * 1005 * * 87 0 * * 0 * * * 5098 0 0 //