HHsearch 1.5 NAME c2m2lA_ FAM FILE c2m2lA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2m2lA_.a3m DATE Sat May 17 08:17:45 2014 LENG 67 match states, 67 columns in multiple alignment FILT 101 out of 657 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.2 EVD 0.4742 1.3297 SEQ >ss_dssp CCCCCCCSSSSSCCCCCEEEEEEETTEEEEEECSTTSCTTTCEEEEHHHHTTTSHHHHHHHHHHHCC >sa_dssp EEEEEEEEDEEEEDCDDACEDEEEEEECCABAACEEEBDEEADECDCDDAEEDBCEBAEEBBEEEEE >ss_pred CCCCCCCCCCCEEEEEEEEEEEEECCEEEEEEEECCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHCC >ss_conf 9875565787532224555566678879999986688800241383888341279999999985169 >Consensus xxxxxxxxxxeeyxVexIlxxrxxxgxxxYlVkWkgxxxxxxTWEpxxnlxxxxxxlixxfxxrxxk >c2m2lA_ MHHHHHHEVPQTFEVERIVRKKIVHGNTSYLVKWKNYSSKDNTWETEDDIRTKYGDLVDDFEKNQKK >UniRef50_D1ZPZ8(36-97:1451) Whole genome shotgun sequence assembly, scaffold_74 n=1 Tax=Sordaria macrospora RepID=D1ZPZ8_SORMA E=5e-09 s/c=1.00 id=24% cov=93% -----QHDSDEEFDVEDVLCEaEGDDGKPTFLVKWERYPLYQCTWEPEHNLGDELMEVWREKKRRQE- >UniRef50_A8X9E2(487-545:1863) C. briggsae CBR-LET-418 protein n=2 Tax=Caenorhabditis briggsae RepID=A8X9E2_CAEBR E=1e-05 s/c=0.87 id=25% cov=88% ---------PEWMQIHRIINHQsYAKSQQDYLVKWKELSYDAATWERDDADIANYEEAIIKYWQHRER >UniRef50_B9PL53(677-731:2325) Chromodomain helicase DNA binding protein, putative n=1 Tax=Toxoplasma gondii GT1 RepID=B9PL53_TOXGO E=4e-05 s/c=0.90 id=26% cov=81% --------------VDRVLDSRVnEDGVEEFFIKWLGRSHLHNSWMTYEELMPLLgIKKVDNFIKRREK >UniRef50_A8Q392(889-955:2707) Associated with TFs and helicases family protein n=1 Tax=Brugia malayi RepID=A8Q392_BRUMA E=9e-05 s/c=0.72 id=25% cov=88% -------EEQNEFIIEKIIGvKKNENGPDLYFVKYKNKAYIHCQWKSQYDLEAGDRRaaaKLKRFHQKR-- >UniRef50_UPI00006CBB70(37-99:1716) chromo domain protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CBB70 E=3e-10 s/c=1.05 id=25% cov=96% -NENYNQQSEPLYEVEAIRGHKGNGKNRLYQIKWLGYPENQNTWEPLENLQ-NILKMVKQYEDSL-- >UniRef50_Q7S076(344-402:451) Predicted protein n=1 Tax=Neurospora crassa RepID=Q7S076_NEUCR E=2e-06 s/c=0.91 id=23% cov=84% ----------ELWELNEVVASRFMYGKLYYQVSWKGWSKDE-YWYPASDLKR-CPYLLVEFHSDNPK >UniRef50_B4J791(44-94:321) GH21809 n=1 Tax=Drosophila grimshawi RepID=B4J791_DROGR E=9e-06 s/c=1.01 id=22% cov=76% --------------VEEIMQRRVFLGRNQVLVRWTGSTKSEWTWEFPESLGKDVDKKIAQFDAK--- >UniRef50_UPI000176046F(1291-1343:1365) PREDICTED: centaurin, gamma 1 n=25 Tax=Danio rerio RepID=UPI000176046F E=3e-09 s/c=1.18 id=24% cov=81% -----------VYTVRRLLDIRRRGRGFQYLVDWEGYGPEERSWVPARDVLDPALD--EDFRQRQE- >UniRef50_Q95XW8(107-167:679) Putative uncharacterized protein n=1 Tax=Caenorhabditis elegans RepID=Q95XW8_CAEEL E=5e-06 s/c=0.85 id=20% cov=81% ----------KEYVVEKIVAHRYPNDRLnqpLYLVMWRGFPDPVSNTEMWGEELENCQELLDAYNE---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1576 0 0 H 2 * * * * * * 1574 * * * * 1557 * * * * 1625 * * * 2 0 * * * * * * 2116 0 0 H 3 * * * 2406 * * 1061 * * * * * * * 1590 * * * * * 3 0 * * * * * * 2987 0 0 H 4 * * * 2816 * * 1875 * 2866 * * 2657 * * * 1787 * * * * 4 0 * * * * * * 3240 0 0 H 5 * * * * 3296 * 743 * 3288 * * * * * * 3444 * * * 3234 5 0 * * * * * * 3827 0 0 H 6 * * 2547 * 3681 * 3776 * 2534 * * 2560 3592 3446 2635 * * * * * 6 0 * * * * * * 4133 0 0 H 7 * * 3577 3560 * 3449 2043 * * * * * 3592 2583 3476 2667 * * * * 7 0 * * * * * * 4133 0 0 E 8 4128 * 3992 844 * * * * * * * * 4240 3216 3244 * * 4135 * * 8 0 * * * * * * 4698 0 0 V 9 3236 * 4336 2823 * * * * 4253 4159 4101 * 2543 * * 2184 4404 3360 * * 9 0 * * * * * * 4698 0 0 P 10 3763 * 3869 2281 * * * * * * * 4967 1041 4002 4723 4881 * * * * 10 55 * 4740 * * * * 4901 0 0 Q 11 * * 4383 1142 * 4389 * 5051 3453 * * 3756 3700 3229 4202 * 5829 * * * 11 0 * * * * * 0 5733 0 1000 T 12 * * * 997 5816 * * 3980 6044 3188 * * 6311 4855 5020 * 5997 2995 4262 5519 12 14 6741 * 2585 263 0 * 5951 1000 1000 F 13 * * * * 2245 * * * 5690 * 5544 * * * * * * 5848 2575 828 13 12 6936 * 2322 322 * * 6265 1000 0 E 14 3660 * 3490 1410 4825 * 4593 4573 5465 4257 * 4281 6227 4556 6905 * 4200 3692 * 6121 14 0 * * * * * * 6392 0 0 V 15 5199 * * * * * * 2142 * 6084 * * 5233 * * * * 504 * * 15 50 4869 * 0 * * * 6676 1938 0 E 16 6212 6643 2340 819 5234 * 4990 * 4371 * * 4728 * * * 5002 6075 6236 6819 * 16 0 * * * * * * 6687 0 0 R 17 2981 6464 4740 3209 5866 4201 6190 * 2424 * 6160 * * 5598 1969 3347 4792 6564 * 6674 17 12 6906 * 0 * * * 6687 1000 0 I 18 * * * * * * * 530 * 3780 * * * * * * * 2093 * * 18 0 * * * * * * 6706 0 0 V 19 * 6328 * 4254 * * 5703 2384 5933 1364 4990 * * 5449 5658 * 6667 2302 6190 5716 19 0 * * * * * * 6706 0 0 R 20 2290 5020 1811 4825 6802 2436 * * 3752 6041 * 4338 * 5061 5885 3945 * * * * 20 44 5068 * 725 1340 * * 6706 1890 0 K 21 4386 5724 5251 3251 * 5933 1823 5061 2767 6583 * 6262 * 7088 3429 3083 4977 5796 * 4854 21 79 4236 * 1502 629 * * 6706 2794 0 K 22 * * 5452 3779 * * 6611 * 2261 * 5933 * * 3376 1029 5490 6255 5085 5798 * 22 78 4241 * 1076 928 * * 6706 2823 0 I 23 6262 5248 6041 4561 3621 5553 6066 2876 2930 3313 5457 5405 5613 5731 4374 5465 3533 3107 7066 4292 23 92 4023 * 616 1524 * * 6706 2974 0 V 24 5133 5527 3488 3586 4263 5390 5012 3517 3819 5062 6195 5255 6547 6583 2886 4263 4081 2671 * 5805 24 115 3703 * 1233 800 * * 6706 3333 0 H 25 * * 3130 3241 * 3094 4779 6247 2113 6423 * 3069 6617 3846 3409 4783 * 6079 * 5253 25 92 4243 6821 2395 304 * * 6706 2826 0 G 26 6038 * 3399 * 6815 980 4601 * 3039 * * 4385 6137 4599 5525 3952 * * * 5524 26 84 4136 * 1450 657 0 * 6702 2874 1000 N 27 4888 * 5173 3681 * 2900 6496 4721 2483 5320 * 3947 5982 3069 3145 4406 3991 5115 * 5514 27 55 4743 * 1811 484 * * 6716 2061 0 T 28 * * 5982 4488 4560 * 4384 3710 4179 2453 * 5557 3389 4789 3460 5645 4288 3044 4939 3917 28 62 4562 * 1629 563 * * 6716 2492 0 S 29 5940 5629 6182 2113 5733 * 5120 6936 4074 3221 4147 * * 2453 4130 5646 6176 5400 5270 3099 29 25 5873 * 687 1401 * * 6716 1610 0 Y 30 * 6164 * * 2333 * * * * 5014 * * * * * * * 3875 6270 566 30 0 * * * * * * 6716 0 0 L 31 5351 * * 4616 3087 * 6478 5679 5114 925 * * * 3854 3762 6164 * * * 3754 31 0 * * * * * * 6716 0 0 V 32 4973 6057 * * * 6264 * 2754 * 6173 * * * * * * 6089 390 * * 32 0 * * * * * * 6716 0 0 K 33 5353 * 5457 5677 * 6621 3730 * 852 4843 5549 * * 4327 3172 4213 * 5446 * * 33 0 * * * * * * 6716 0 0 W 34 * * * * 5245 * * * * * * * * * * * * * 130 4065 34 0 * * * * * * 6716 0 0 K 35 4627 4716 5601 2775 * 6069 * 6366 1485 3747 5836 * * 3895 3661 5786 3788 4580 * * 35 0 * * * * * * 6716 0 0 N 36 * * 4133 4848 * 692 4574 * * * * 2877 * 5095 5449 4698 * * * 5604 36 23 6010 * 0 * * * 6716 1390 0 Y 37 * 5172 6069 * 2916 * 6665 6478 5982 2891 * 6332 * 5329 4834 4925 * * 2723 1335 37 46 5352 7176 0 * * * 6716 1573 0 S 38 3805 * 2732 4584 * 3259 5407 * 6628 6572 * 4456 1796 6968 6218 2320 4948 * * * 38 53 5279 6591 2033 404 * 0 6719 1949 1000 S 39 4567 * 4130 3115 5344 5622 3530 4031 4205 4088 5983 4483 3053 5169 6213 3994 * 4750 * 2668 39 36 5866 7039 1269 773 1026 974 6710 1790 1523 K 40 6538 * 2912 2379 * 5112 4834 4270 3872 3871 * 4942 4055 * 4590 2612 4528 6189 5533 4831 40 0 * * * * 974 1027 6714 0 1567 D 41 5085 * 2231 2180 4601 4915 3197 6524 4931 * * 4741 5250 3064 4461 5840 * 5231 * 4750 41 34 * 5431 * * 0 * 6707 0 1000 N 42 3043 2998 3017 * * * 6599 * * * 6595 1759 4450 5446 5857 2657 4987 6096 5421 * 42 38 5278 * 0 * 973 1027 6706 1933 1622 T 43 * 6087 * 5841 * * 6140 6487 * 6827 * 4711 * 5947 6075 2051 767 * * 4820 43 0 * * * * 0 * 6716 0 1000 W 44 * * * 6524 5884 * * 5629 * 6556 * * * * * 6584 5549 * 160 6120 44 0 * * * * * * 6716 0 0 E 45 6632 * 6592 450 * * * 4408 5456 5414 6455 6173 * 5376 * * * 3897 * 4726 45 0 * * * * * * 6716 0 0 T 46 4968 * 5384 5705 5564 * 6220 * 4630 4203 4975 5564 1003 * 6182 3759 3394 5475 * 4702 46 0 * * * * * * 6716 0 0 E 47 2853 * 5216 1811 6299 * 6120 5241 4144 3550 6366 * 4330 4237 4317 5522 6032 4925 4652 3652 47 0 * * * * * * 6716 0 0 D 48 3816 6626 3242 1490 * 4909 4696 5951 4836 * 6948 5320 6496 4916 4245 2931 4626 5926 * 5982 48 0 * * * * * * 6716 0 0 D 49 4008 7031 2654 3855 * 5364 6665 6069 5066 5206 * 1361 * 4887 6609 3618 5574 4823 * 5317 49 14 6681 * 0 * * * 6716 1000 0 I 50 * 6156 5366 5530 2766 * * 2809 * 1106 4773 * * * * * * 2892 * 6108 50 242 5299 2957 736 1324 * * 6701 1585 0 R 51 * 6545 4000 3711 * 4483 4634 5954 2904 2176 4680 4241 4817 3799 3617 5067 4974 4263 * * 51 226 6666 2887 0 * 98 3931 6769 1000 4039 T 52 3231 6088 1961 2663 * 4475 * 6440 4773 5922 * 3976 4482 4482 4929 3367 3804 * * * 52 249 4745 3044 645 1472 229 2766 6623 2048 4128 K 53 4670 6047 3062 3616 5144 2646 3332 4279 4700 4752 * 2569 4157 5250 6207 5035 5592 6131 * * 53 83 5229 5082 564 1629 1750 509 6619 1681 4124 Y 54 2140 1921 4997 5926 4696 5404 * 4948 5283 3656 6364 5329 * 5296 6052 3756 * 3925 * 4498 54 52 6174 5543 0 * 477 1828 6688 1000 3897 G 55 4394 * 4905 4033 4944 5486 * 6288 2874 4705 4968 5608 2576 3291 3628 4029 3877 4542 6535 5089 55 11 * 7010 * * 2112 380 6705 0 2610 D 56 3989 * 2231 1636 6236 6456 * * 3360 * * * 6017 3721 3738 4975 4749 * * 4470 56 75 4667 6491 941 1061 1287 761 6705 1803 2760 L 57 3412 * * 4407 6280 5588 5154 3452 3294 1400 4629 6197 * 5250 5785 * 4482 4011 * 5668 57 57 6532 5178 1585 585 0 * 6666 1000 2460 V 58 5593 * * * 5211 * * 1459 5147 1661 5703 * * * * * * 2337 6089 6357 58 0 * * * * 0 * 6677 0 1840 D 59 2853 * 2753 2472 6187 * 5813 4887 2899 4759 5823 4532 * 3799 3275 * 4812 5320 * * 59 0 * * * * * * 6690 0 0 D 60 2976 * 3144 1894 6261 * 6633 5682 2634 * 5459 6289 * 4182 3167 5448 5715 6016 6055 6295 60 0 * * * * * * 6690 0 0 F 61 * * * * 960 * * 5929 6143 5045 6549 6055 * 6611 * * * * 4132 1590 61 15 6555 * 1000 1000 * * 6690 1000 0 E 62 * * 4409 1567 6261 * 2939 5483 2784 5376 4837 4875 * 5052 4794 * * 5563 4041 3979 62 0 * * * * * * 6641 0 0 K 63 3036 * 2908 3158 * 5466 * * 2503 5527 * 3693 * 3289 3038 3488 5537 * * * 63 0 * * * * * * 6622 0 0 N 64 5943 * 5423 3912 6860 6297 3951 7059 2015 * * 4558 * 4882 1467 3453 6619 * * 6198 64 0 * * * * * * 6605 0 0 Q 65 5620 * 6255 2550 * * 4273 6436 3077 3440 * 3338 * 2581 2381 * * 6027 * 4362 65 0 * * * * * * 6514 0 0 K 66 4138 * * 2770 * 5868 5904 * 2006 5689 * 5949 3231 2418 3507 4982 4585 * * 5409 66 0 * * * * * * 6229 0 0 K 67 * * * * * * * * 1013 * * * * 2250 1766 * * * * * 67 0 * * 0 * * * 5518 0 0 //