HHsearch 1.5 NAME c2m1zA_ FAM FILE c2m1zA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2m1zA_.a3m DATE Thu Jan 10 06:51:23 2013 LENG 106 match states, 106 columns in multiple alignment FILT 102 out of 131 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.1 EVD 0.3802 -1.2527 SEQ >ss_dssp CCCEEEEEEECSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEESSCCSTHHHHTTSEEEEECTTHHHHCHHHHHHHHH HHHTCC >sa_dssp EDDDAAAAAABDECEEDADDAADCADEBAEEDCBECDBABACCEDCEDDADDEBAEEACAAABACECEBEBDECAEECDDCECDADCADEDBDEBADCAC CECEEE >ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHCCEEEEEEECCCCCHHHHCCCEEEEEEHHHHHCCHHHHHHHHH HHHHCC >ss_conf 9723999971676344659999999999998898899996278999877898899739989999516767403328983898219898208999999999 996379 >Consensus mxkKivaVTACptGIAHTyMAAeaLexaAkxxGxxikVETqGaxGxenxLtxxdIxxAdxVIiAxDxxixdxxRFxgkxvxxxxvxxaIxxxxxlixxal xxxxxk >c2m1zA_ MKRKIIAVTACATGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDTKVRNKERFDGKVVLEVPVSAPIKDAEKVINAAL ALIDEK >UniRef50_P32676(4-103:113) Fructose-like phosphotransferase enzyme IIB component 3 n=65 Tax=Enterobacteriaceae RepID=PTFB3_ECOLI E=3e-25 s/c=1.16 id=36% cov=90% ----LVAVTACVSGVAHTYMAAERLEKLCLLEKWGVSIETQGALGTENRLADEDIRRADVALLITDIELAGAERFEHCRYVQCSIYAFLREPQRVMSA-- ------ >UniRef50_C9XM44(1-100:100) Putative PTS system, IIb component n=4 Tax=Clostridium difficile RepID=C9XM44_CLODC E=7e-12 s/c=0.72 id=29% cov=89% MNKKIVAVCE-------SERSLNSLKTAANDLGFDLVYEIQENDNIKNELSIYDIEDASIVLFVTSDSIESIEkidRFIDREFYEVDPKYIIEDAKSIVS EIL------ >UniRef50_Q2C2Z8(2-104:277) PTS system, fructose-specific IIBC component n=2 Tax=Gammaproteobacteria RepID=Q2C2Z8_9GAMM E=8e-20 s/c=0.95 id=26% cov=97% ---KISIVTACPSGIATSLIAAGLLEKAADELKWQANIERHTSLKPTNMLTQLQIEQADCIVIAANENLAiDEQRFVGKRVFRADVAACMENPTAWLQKA VEQASE- >UniRef50_Q600G5(166-264:660) Putattive pts system, fructose-specific IIABC component n=4 Tax=Mycoplasma RepID=Q600G5_MYCH2 E=4e-26 s/c=1.19 id=36% cov=94% --KKVIGITSCTVGIAHTYLAAEKLENALKNSGYFPKIETRGSAGPKNILTKSDIKTAEFVIISSDLEI-DTTAFIGKKVYFCTTKDAIHKSEKIIELAQ KA---- >UniRef50_Q9CK39(236-336:388) FruA n=1 Tax=Pasteurella multocida RepID=Q9CK39_PASMU E=5e-26 s/c=1.17 id=36% cov=92% --KKIVAVTACPTGVTQTFMSAEAIMLYAKTQGWCVKVETHGQMGADNLITAEEVAAADLVFAATDIEI-DLSKFEGKPLYRTSTHATLKNIAQEFDKA- ------ >UniRef50_D0IBI8(2-96:98) PTS system fructose-specific IIB component n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0IBI8_VIBHO E=6e-26 s/c=1.24 id=36% cov=91% ---KVVAITACHTGIAHCYMAADRLVEAARSLNIQIKVETQGAMGIENKISKREFDSADHILLATEISPSESERYAGKPLTMVSVQEAINHPIALLKK-- ------ >UniRef50_C0BIQ8(2-101:104) Phosphotransferase system PTS fructose-specific IIB subunit n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BIQ8_9BACT E=1e-20 s/c=1.01 id=37% cov=95% ---KIGLITSCLAGVAHSKMAAIALQKEAVKRGYEICIEQQGGHKIPVKLTSDQIKESDIIIIAKMVTISGKNRFENKLILDVSVNKAVRDPKSILDQAE ELI--- >UniRef50_UPI00016A94C8(3-99:136) protein-N p-phosphohistidine-sugar phosphotransferase n=2 Tax=Burkholderia oklahomensis RepID=UPI00016A94C8 E=7e-13 s/c=0.77 id=30% cov=92% ---KLIGLVAAPARTAAPTFAAHALNRAARARGIALALETRSALGVQTPLSADQIGAASVVLIAADDSASiDEAPFAGKTIHRVSVDDAIRDADAVLARA ------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * 2900 207 * * * * * * * * * 1 0 * * * * * * 2878 0 0 K 2 * * * 3203 * * * * 1671 * * 3377 * 2445 3094 3171 3850 * * * 2 0 * * * * * * 3381 0 0 R 3 * * * * * 5102 * 4281 389 4454 * * * * 3179 * * * * * 3 0 * * * * * * 3643 0 0 K 4 * * * 4761 6060 * * * 512 * 6110 5272 * * 3349 4514 6048 5999 * 4881 4 0 * * * * * * 4128 0 0 I 5 * * * * 3803 * * 902 * 2059 * * * * * * * 2704 * * 5 0 * * * * * * 4194 0 0 I 6 4611 * * * * 5581 * 2212 * 2792 * * * * * 5346 * 854 * * 6 0 * * * * * * 4194 0 0 A 7 789 4338 * * * 1795 * 4234 * 5581 * * * * * * * 6687 * * 7 0 * * * * * * 4194 0 0 V 8 4860 * * * * * * 1852 * 3773 * * * * * * * 700 * * 8 0 * * * * * * 4194 0 0 T 9 4529 3827 * * * * * * * * * * * * * 5043 287 4783 * * 9 0 * * * * * * 4194 0 0 A 10 484 * * 5097 * 4366 * * 5034 * * 6716 * * * 2579 * * * * 10 43 * 5097 * * * * 4194 0 0 C 11 4725 82 * * * 5857 * * * * * * * * * * * * * * 11 0 * * * * * 0 4107 0 1000 A 12 3572 * * * * * 5800 5010 * 5535 5176 * 502 * * * 3809 4627 * * 12 0 * * * * * 0 4107 0 1000 T 13 2521 * * * * * * * 5857 * 6153 4309 * * * 2870 836 4405 * * 13 0 * * * * * 0 4107 0 1000 G 14 * * * * * 56 * * * * * * * * 4725 * * * * * 14 0 * * * * * 0 4107 0 1000 V 15 * * * * * * * 776 5053 4235 6121 * * * * * 4725 1833 * * 15 0 * * * * * 0 4107 0 1000 A 16 107 * * * * * * * * * * * * * * * 5221 4490 * * 16 0 * * * * * 0 4107 0 1000 H 17 4725 * * * * * 209 * * * * * * 4602 * 5053 5275 * * * 17 0 * * * * 0 * 4107 0 1000 T 18 * 5811 * * * * * * * * * * 4783 * * 3024 281 * * * 18 0 * * * * * * 4194 0 0 Y 19 * * * 5097 2495 * 5906 * 5581 5346 * * 5403 6668 * * 4783 5130 * 660 19 0 * * * * * * 4194 0 0 M 20 * * * * 4784 * * 3742 * 2769 516 * * * 5099 * * 6183 * * 20 0 * * * * * * 4192 0 0 A 21 234 * * * * * * * * * * * * * * 3146 * 4766 * * 21 0 * * * * * * 4192 0 0 A 22 300 * * 5455 * * * * 4525 5099 * * * 4000 5056 * * * * * 22 0 * * * * * * 4192 0 0 Q 23 6040 * 3078 773 * 4694 4789 5587 3806 * * 5105 * 4139 5138 * * * * * 23 0 * * * * * * 4197 0 0 A 24 1116 * * * * 6154 * * 2135 3937 * 5027 * 6328 3806 3222 * * * 6661 24 0 * * * * * * 4197 0 0 L 25 * * * * * * * 2847 * 263 6138 * * * * * * 6245 * * 25 0 * * * * * * 4197 0 0 K 26 5128 * 6172 1102 * * * 4832 2545 5767 5249 4789 * 3534 6360 4670 5268 4619 * * 26 0 * * * * * * 4197 0 0 K 27 3586 * 6042 3205 * 6234 * 5304 1323 5015 * 3518 * 3317 3673 6085 5105 6146 * * 27 0 * * * * * * 4197 0 0 G 28 813 * * 3281 6060 4637 * * 4736 4630 6524 * * 7087 * 5372 3702 5555 6717 4481 28 0 * * * * * * 4197 0 0 A 29 424 3804 * * * 2585 * * * 5919 * * * * * * * * * * 29 0 * * * * * * 4197 0 0 K 30 4359 * 4047 3059 * 6773 * * 1262 4017 * 5105 6570 4718 3041 6543 5065 4528 * * 30 0 * * * * * * 4197 0 0 K 31 2603 * 3262 2441 * * * * 1771 6151 * 5355 * 4647 3979 4067 4252 * * * 31 0 * * * * * * 4197 0 0 M 32 3778 * 7009 6151 6981 * 4894 * 4783 1349 2984 * * 3832 2332 5919 * * * 5444 32 33 5458 * 0 * * * 4197 1382 0 G 33 * * 4907 * * 317 7040 * 3986 * * 3421 * * * * * * * * 33 0 * * * * * * 4197 0 0 N 34 * 7085 * * 4167 * 2848 2762 * 3623 4439 6698 * * * * 6625 2423 2806 2522 34 0 * * * * * * 4200 0 0 L 35 4253 6139 3015 2079 5922 5671 7047 * 3079 6698 * 4061 7030 2949 4655 3884 3518 * 6686 * 35 0 * * * * * * 4200 0 0 I 36 3820 4655 * * * * * 1362 * 2737 5682 * 5922 * * * 5140 1805 * * 36 0 * * * * * * 4200 0 0 K 37 4231 5607 5853 * * * 4649 6849 713 6594 * 5351 * 5628 3686 3967 * 5108 * 5342 37 0 * * * * * * 4200 0 0 V 38 * * * * 6986 * * 2208 * 4794 6252 * * * * * 6594 541 * 5108 38 0 * * * * * * 4200 0 0 E 39 * * * 39 * * * * * * * * * 5219 * * * * * * 39 0 * * * * * * 4200 0 0 T 40 6349 * * * * 6548 * 3898 3979 * * * * 4521 4404 * 422 6705 * * 40 0 * * * * * * 4200 0 0 Q 41 * * 6972 * * * 3281 5140 * * * 2892 * 633 3621 * * * * * 41 0 * * * * * * 4200 0 0 G 42 * * 5140 5108 * 208 * * * * * * * * * 4255 5351 * * * 42 11 * 6986 * * * * 4200 0 0 A 43 1377 * * * 6233 4357 * 5613 * * * 5092 5131 3931 5408 1695 3955 6340 * * 43 10 * 7249 * * 0 * 4204 0 1000 T 44 3883 * 3667 5319 * 5422 5600 2887 * 2709 2958 3269 * 5688 6739 3177 4427 3677 * * 44 0 * * * * 0 * 4204 0 1000 G 45 * * 6349 * * 233 * * 3356 * * 5108 * * * 6587 * * * * 45 26 * 5834 * * * * 4200 0 0 I 46 3101 7041 * * 6140 * * 1757 * 5621 * 6137 3673 5391 6160 4444 3253 1969 * 6846 46 18 * 6356 * * 0 * 4197 0 1353 E 47 * * 3471 1064 * 5604 * 5886 2466 * * * 5599 2987 * 5194 5319 6164 * * 47 16 * 6523 * * 0 * 4200 0 1000 N 48 5916 * 3042 * * 5187 5249 * * * * 556 * 5132 * * 3946 5588 * 6170 48 19 * 6292 * * 0 * 4198 0 1000 E 49 3759 * * 2546 * 6153 7089 4261 2816 5643 5341 * 3306 2653 3470 4570 5869 3555 * * 49 0 * * * * 0 * 4196 0 1000 L 50 6686 * * * 4638 * * 2781 * 342 * * 5987 * * * * * * * 50 0 * * * * * * 4200 0 0 T 51 6155 * 4205 6345 * * * * 5460 * * * 6590 4941 * 1942 753 * * * 51 0 * * * * * * 4200 0 0 E 52 1827 * 4203 3152 * 5937 6626 5112 3462 5928 * 6229 2916 3216 6247 3455 5500 6798 * * 52 0 * * * * * * 4200 0 0 K 53 2928 * 2668 1620 * 6784 6730 * 3552 5352 * 7394 * 3404 3936 4700 6146 * * 4667 53 0 * * * * * * 4200 0 0 D 54 5084 * 1131 1761 6349 * * 5774 * 6553 * 6350 * 2781 * * * 5648 * * 54 0 * * * * * * 4200 0 0 V 55 6168 * * * 5822 * * 382 * 3895 6794 * * * * * * 3005 * * 55 0 * * * * * * 4200 0 0 N 56 2127 * 3216 2404 * 4795 * * 2727 5263 * 4081 * 3830 3790 4258 * 7061 * * 56 0 * * * * * * 4200 0 0 I 57 2234 * 4011 2393 * 4946 5206 6707 3476 * 7091 3565 * 3526 3397 3981 4674 * * * 57 0 * * * * * * 4200 0 0 G 58 93 * * * * 6707 * 7061 * * * * * * * 5011 6132 * * * 58 0 * * * * * * 4200 0 0 E 59 5107 * 656 4419 * * * * 3171 * * 5711 7453 * 7043 3437 4330 * * 7956 59 0 * * * * * * 4200 0 0 V 60 2279 3711 * * 4751 2386 5822 3534 6580 2748 6873 * * * * * * 2473 * 4747 60 0 * * * * * * 4200 0 0 V 61 4294 5402 * * * * * 1893 * 5941 * * * * * * * 644 * * 61 15 * 6626 * * * * 4200 0 0 I 62 * * * * 4803 * * 677 * 2420 * * * * * * * 2718 * * 62 0 * * * * 0 * 4199 0 1000 F 63 6140 * * * 3101 * 6237 1408 * 1780 6150 * * * * * * 2523 * * 63 41 * 5142 * * * * 4200 0 0 A 64 304 * * * * 5401 * 4005 * * * * * * * 4702 6005 4329 * * 64 0 * * * * 0 * 4132 0 1000 V 65 1614 4804 * * * * 3913 3764 5609 6150 * 4045 * * * 2895 3007 2800 * * 65 0 * * * * * * 4200 0 0 D 66 4663 * 473 4171 * 5044 * * * * 4854 3637 * * * 4659 * * * * 66 0 * * * * * * 4200 0 0 T 67 7041 * 3736 5352 * * * 2254 2542 4287 * * * 6168 3518 * 3743 1814 * * 67 9 * 7290 * * * * 4200 0 0 K 68 2602 * 4385 2876 * 3246 5171 6621 3315 6118 * 3326 5631 4842 5008 3051 4278 4840 * * 68 0 * * * * 0 * 4203 0 1000 V 69 4437 6150 * * * * * 1080 * 3563 * * 3845 * * * 6375 1734 * * 69 417 * 1993 * * * * 4200 0 0 R 70 3876 * 3866 1581 * 5204 * 6190 3059 6623 6380 4721 5166 6221 3966 2983 4931 4520 * * 70 419 3612 2556 178 3105 0 * 4190 1938 3128 N 71 * * 1093 3586 * 2272 * * 5508 * 5391 3609 * 4161 6440 4763 6833 * * * 71 11 * 7066 * * 0 * 4215 0 2973 K 72 3375 * * 2578 * * * 3905 3275 2770 2981 6232 4394 4546 4351 5184 3665 4891 * * 72 35 * 5371 * * 0 * 4204 0 1000 E 73 3440 * 2557 1367 * 4835 * 6846 7256 * * 4975 6750 4817 6514 2598 4404 * * * 73 43 5093 * 1585 585 0 * 4190 1000 1549 R 74 5935 * * * 6566 * * * 4828 * * * 4795 * 192 6088 * 6388 * * 74 0 * * * * * * 4200 0 0 F 75 * * * * 47 * * * * 6088 * * * * * * * * * 5822 75 0 * * * * * * 4200 0 0 D 76 2260 * 3097 2726 * 4606 6349 4106 3646 6980 * 3486 * 5134 6124 5700 5855 2916 * 5449 76 0 * * * * * * 4200 0 0 G 77 6926 * 4151 6990 * 520 5077 * * * * 3044 * 6345 6857 4568 5937 * * * 77 30 5582 * 707 1368 * * 4200 1490 0 K 78 5043 4095 7019 6566 * * 6132 4651 512 4809 6580 * * * 4396 6345 * 5391 * 6992 78 42 5114 * 884 1126 * * 4200 1711 0 V 79 7271 * 6237 4776 * * 5946 * 2940 5146 6375 3707 1758 5972 1859 6146 4508 5247 6856 * 79 26 5831 * 1788 493 * * 4200 1485 0 V 80 6681 6181 * * 4170 * * 2456 7356 2054 5137 * 6730 * * * 4634 1415 * 4699 80 0 * * * * * * 4200 0 0 L 81 6759 * * * 3888 * 4795 2058 6200 2449 * * * * 5826 * 5282 2165 * 2442 81 0 * * * * * * 4200 0 0 E 82 6759 * 3284 2306 5380 * 5236 6323 2576 * 5443 4468 * 2970 2518 5162 5286 5493 * 6784 82 0 * * * * * * 4200 0 0 V 83 3637 3793 5142 7445 5394 * * 4614 * 6580 4829 * * * 6140 4411 2146 1265 * * 83 0 * * * * * * 4200 0 0 P 84 5222 6350 3547 4955 * 3003 * * 3550 * * 5202 2806 * 5139 1381 4306 * * * 84 0 * * * * * * 4200 0 0 V 85 5250 * * * * * * 2894 * 4843 6247 * 3477 * * 6873 2037 1155 * * 85 0 * * * * * * 4200 0 0 S 86 2556 * 4174 4616 * 3780 4754 * 2115 * * 3861 * 3966 3907 3065 4473 6059 * 6155 86 0 * * * * * * 4200 0 0 A 87 2791 * 2070 2179 7036 * 5142 6838 3299 5680 * 6210 6075 4907 3426 5631 5217 * * 5112 87 0 * * * * * * 4200 0 0 P 88 950 4896 * * 4304 2936 * 4068 * 4682 * * 3879 * * * 6140 3525 * * 88 0 * * * * * * 4200 0 0 I 89 * * * * * * * 639 * 2069 4991 * * * * * * 3507 * * 89 0 * * * * * * 4200 0 0 K 90 6748 6157 5161 3995 6748 * 3137 * 1567 5016 * 2817 * 4667 2716 4913 * 6186 * 6138 90 0 * * * * * * 4188 0 0 D 91 6243 * 1956 3363 * 7244 2579 * 2719 * * 2262 * 4959 5721 4958 6127 * * * 91 0 * * * * * * 4188 0 0 A 92 1798 * * * * 4027 * 4449 * * * * 1260 * * 4190 3927 3895 * * 92 0 * * * * * * 4188 0 0 E 93 3411 * 2335 1834 * 4223 6236 5369 2849 * * 7081 6115 3796 * 5400 4256 5180 * * 93 0 * * * * * * 4188 0 0 K 94 2194 * 4745 2685 * 3504 6050 6674 2607 5692 * 4995 * 3148 6141 3504 6127 4997 * * 94 0 * * * * * * 4188 0 0 V 95 5630 * * 5067 4725 * * 2418 * 1389 5628 * * * * * 5715 1841 5326 * 95 0 * * * * * * 4188 0 0 I 96 * * * * 3244 * * 1183 * 1796 4017 * * * * * * 3473 * 6127 96 0 * * * * * * 4188 0 0 N 97 3593 * 2186 2330 * 6923 6547 * 3478 6955 * 3750 * 2708 4910 3576 4741 * * * 97 8 * 7511 * * * * 4184 0 0 A 98 3086 * 4440 2567 * * * * 2024 5882 * * * 2787 2251 * 4333 * * * 98 0 * * * * * 0 4181 0 1000 A 99 643 * * * * * * 2451 * 6145 * * * * * 6572 4638 3161 * * 99 9 * 7321 * * * 0 4127 0 1000 L 100 4999 5737 * 2767 5825 * * 4076 5141 1019 4854 * * 5350 * * * 2784 * * 100 0 * * * * 1000 1000 3926 0 1320 A 101 1931 * * 2385 * * * 6176 2006 * * * * * 4209 2541 5609 4748 * * 101 45 5015 * 1000 1000 * 0 3768 1000 1000 L 102 1252 * * * * * * 4266 2840 2478 4719 * * 3646 * 5235 * 3955 * * 102 0 * * * * 0 * 3744 0 1000 I 103 1655 * * * 4766 * * 1783 * 2685 * * * * 4261 * * 2761 * * 103 0 * * * * * * 3574 0 0 D 104 * 4161 1493 2023 * 4306 * * * * * 2282 * * * 3532 * * * * 104 0 * * * * * * 3316 0 0 E 105 3050 * 2332 1258 * * * * 2968 * * 3934 * 3848 * * * * * * 105 0 * * * * * * 3115 0 0 K 106 * * * * * * * * 395 * * * * 3100 3026 * * * * * 106 0 * * 0 * * * 3176 0 0 //