HHsearch 1.5 NAME c2m1mA_ FAM FILE c2m1mA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2m1mA_.a3m DATE Sat Jan 11 09:05:15 2014 LENG 107 match states, 107 columns in multiple alignment FILT 108 out of 189 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.4 EVD 0.4473 1.6268 SEQ >ss_dssp CCSCSSCSEEEEECSSSCCEEEEESGGGSSHHHHHHHHHHHTTSCCCCCCTTTSCCCTTEEEEEECTTCCEEESSSSCHHHHHHHCCCEEEEEHHHHTTS CTTSCCC >sa_dssp EEEDEDDDEADBDBDECEDEEDCAABEBECCEEACEBACEBBEDEBCECCEECABBAEDBAAAABBEEDDCBAACDCECEEABECADEACAADAEDAEEC CDEEBBE >ss_pred CCCCCCEEEEEEEECCHHEEEEEEHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCHHHHHHHCCEEEEECHHHHCCC CCCCCCC >ss_conf 9766650489999614020223542312798999999998506223454411256778759988708898899847798889963306797475562440 5665689 >Consensus xxxxxxxxxVKVxmdGxxigRkiDLxxxxsYxxLxxxLxxMFxxxxxxxxxxxxxxxxxxxlxYeDxEGDxmLVGDvPWxxFvxsvkRLrIxxxseaxxl xxxxxxx >c2m1mA_ HEADVGGIFVKVSMDGAPYLRKIDLRVYGGYSELLKALETMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGTEAKGL GCGVGSH >UniRef50_Q9C5X0(94-182:185) Auxin-responsive protein IAA34 n=4 Tax=rosids RepID=IAA34_ARATH E=2e-27 s/c=1.38 id=39% cov=84% --------YVKVTMDGLVVGRKVCVLDHGSYSTLAHQLEDMFGMQ-SVSGLRLFQMESEFCLVYRDEEGLWRNAGDVPWNEFIESVERLRITRRNDAV-- ------- >UniRef50_B9N310(12-109:117) Predicted protein (Fragment) n=2 Tax=Spermatophyta RepID=B9N310_POPTR E=1e-09 s/c=0.65 id=33% cov=79% ---------VTVVLEGRSICQRISLHKHASYHSLAKALRQMFVDGGSDSGGSTASSASEsvsdhdldltnavpgHLIAYEDIESDLLLAGDLNWKDFVRV AKRIRIL--------------- >UniRef50_C5Y1N5(24-118:185) Putative uncharacterized protein Sb05g008510 n=1 Tax=Sorghum bicolor RepID=C5Y1N5_SORBI E=5e-19 s/c=1.00 id=35% cov=79% --------FVKVFMQGEVVGRKINLATHQNYASLSFTLKRlgnnysMPSCELNGLGNKEVDGPSDdnnFILFYDNVDGDRFFLGEVPWEIFVISVKRIYI V--------------- >UniRef50_C5XXU7(625-707:708) Putative uncharacterized protein Sb04g026610 n=1 Tax=Sorghum bicolor RepID=C5XXU7_SORBI E=3e-20 s/c=1.20 id=30% cov=78% ----------KVFVESDTVGRNLDLSALSSFDELYRRLSEMFGIEGAELRSR---------VLYRCATGEVKHAGDEPFSDFVRSARRLTILTDAGSDNL G------ >UniRef50_B9I9A2(79-172:175) Predicted protein n=5 Tax=rosids RepID=B9I9A2_POPTR E=4e-30 s/c=1.40 id=41% cov=89% NECSSATFFVKVYMEGIPIGRKLNLLAHDGYHDLIQTLDQMFNTSILWPEMDIEHSGQCHVLTYEDKEGDWLIVGDVPWEMFLPSVRRLKITRA------ ------- >UniRef50_D1IS31(232-354:364) Whole genome shotgun sequence of line PN40024, scaffold_2.assembly12x (Fragment) n=9 Tax=Magnoliophyta RepID=D1IS31_VITVI E=2e-29 s/c=1.05 id=41% cov=95% ------GLFVKINMDGVPIGRKVDLTAYDSYEKLSSAVDELFRGLLAAQRDSsaggiqtkheeektitgLLDGSGEYTLVYEDNEGDRVLVGDVPWHMFV NTVKRLRVLKSSELSALCLGSSKQ >UniRef50_A5ARL9(980-1075:1096) Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=A5ARL9_VITVI E=9e-26 s/c=1.22 id=30% cov=90% --SDLAHYFAKVYKRG-AVGRSIDITRYSGYDELKQDLARRFGIE----GQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQM SL----- >UniRef50_Q93WC4(160-241:251) Auxin-responsive protein IAA29 n=2 Tax=Arabidopsis thaliana RepID=IAA29_ARATH E=4e-19 s/c=1.17 id=41% cov=77% -------MYVKVKMDGVAIARKVDIKLFNSYESLTNSLITMF--TEYEDCDREDTN---YTFTFQGKEGDWLLRGDVTWKIFAESVHRISIIR------- ------- >UniRef50_D1IFW6(605-696:696) Whole genome shotgun sequence of line PN40024, scaffold_104.assembly12x (Fragment) n=3 Tax=rosids RepID=D1IFW6_VITVI E=2e-24 s/c=1.23 id=34% cov=86% ----------KVLKYGTALGRSIDLARFDGYDELIIELDQMFDF-----GGSLMDGSCRWHVTYTDDEGDMMLLGDYPWQEFRSMVQRIFICPKEETERL NSATPS- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * H 1 * * * * * * 1000 * * * * 1000 * * * * * * * * 1 0 * * * * * * 1500 0 0 E 2 * * * 1322 * * * * 737 * * * * * * * * * * * 2 0 * * * * * * 2523 0 0 A 3 2173 3197 * * * * * * * 2883 * 3717 * * * 1423 3564 * * * 3 0 * * * * * * 2884 0 0 D 4 3717 * 2300 3767 * 2973 * * 3564 * * 4953 * * * 1310 * * * * 4 0 * * * * * * 2884 0 0 V 5 * * * * * * * 2391 * 2420 * * 4196 * 3215 3587 4221 1912 * 4118 5 0 * * * * * * 2956 0 0 G 6 2337 * * * * 581 * * * * * 4305 * * * 5646 3990 * * * 6 0 * * * * * * 3158 0 0 G 7 2983 4206 * * 5203 1969 4048 * * 4880 * * 5097 * * 1779 3322 * * 5521 7 28 5693 * 1585 585 * * 4025 1000 0 I 8 4082 5668 * 4042 4080 5200 * 4869 4626 1581 2100 3570 * * * 6589 * * * 4734 8 0 * * * * * * 3881 0 0 F 9 * * * * 1101 * 4558 * * 3916 * * * * * * * * 5858 1293 9 0 * * * * * * 4091 0 0 V 10 4493 4668 * * * * * 3181 * * * * * * * * 5154 362 * * 10 0 * * * * * * 4311 0 0 K 11 * * * * * * * * 137 * * * * 4952 * * 4096 * * * 11 0 * * * * * * 4682 0 0 V 12 * * * * * * * 3807 * * * * * * * * * 107 * * 12 17 * 6382 * * * * 4702 0 0 S 13 5000 7162 * * 2538 * 3564 * 3319 5102 * 2522 * 4406 5734 2833 5016 4132 * 3219 13 0 * * * * 0 * 4692 0 1000 M 14 * * * * * * * 6265 2845 3560 640 * * * 4770 * * 4010 * 5456 14 0 * * * * * * 4706 0 0 D 15 * * 1221 1707 * * 5254 * 6408 6226 6817 * * 2944 6545 5561 6629 6787 * 5413 15 0 * * * * * * 4706 0 0 G 16 6812 * * * * 188 * * * * * * * * * 3144 * * * * 16 96 * 3961 * * * * 4706 0 0 A 17 2606 5424 3693 2785 * * * 3188 * 4481 * 5731 * * 4064 4883 4863 1922 * 5332 17 0 * * * * 0 * 4645 0 1845 P 18 2143 * 4016 4770 * 4534 * 6285 5092 6546 * * 1469 * * 3173 4661 3893 * * 18 7 * 7633 * * * * 4706 0 0 Y 19 * * * * 4525 * * 1368 * 3806 * * * * * * * 1643 * 2495 19 0 * * * * 0 * 4714 0 1000 L 20 3957 4147 * * * 579 * * * 2522 6403 * * * * 6471 6299 * * * 20 0 * * * * * * 4712 0 0 R 21 * * * * * * 5238 * * * * * * 5063 84 * * * * * 21 0 * * * * * * 4712 0 0 K 22 3477 * * * * * * * 769 * * 4668 * * 4147 2954 3341 * * * 22 0 * * * * * * 4712 0 0 I 23 * * * * * * * 1588 * 2058 6567 * * * * * * 1263 * * 23 0 * * * * * * 4712 0 0 D 24 * 4520 351 * * * 5238 * * * * 3107 * * * 5063 * * * * 24 0 * * * * * * 4712 0 0 L 25 * * * * * * * 4245 * 293 4725 * * * * * * 3419 * * 25 0 * * * * * * 4712 0 0 R 26 3126 6877 6896 5824 * 4490 5063 * 2904 3959 5587 3773 4970 8171 4275 1770 3451 6277 * * 26 0 * * * * * * 4712 0 0 V 27 1887 * 4520 * * * * 5154 2939 3535 3319 4548 6832 * 3496 3573 4132 4060 * * 27 0 * * * * * * 4712 0 0 Y 28 * 5824 * * 2370 * 1943 5676 * 2464 6471 6607 * 6277 * 5103 * 5353 * 2060 28 0 * * * * * * 4712 0 0 G 29 3378 7846 2932 5377 * 3023 5622 * 2358 * * 3192 * 4230 3877 3221 4161 * * 6365 29 0 * * * * * * 4712 0 0 G 30 5797 3580 5018 * * 1862 * * * * * 3026 * * 7151 1145 6564 * * * 30 0 * * * * * * 4712 0 0 Y 31 * * * * 4296 * 5747 * * 5945 * * * * * * * * * 129 31 0 * * * * * * 4712 0 0 S 32 3713 * 2453 1910 * 4505 3853 4515 4602 6241 7846 4542 5835 3740 4370 4428 5098 * * * 32 0 * * * * * * 4712 0 0 E 33 5190 * 3115 1511 * 5156 * * 4079 * 6572 5801 * 3725 4970 2452 3317 * * * 33 0 * * * * * * 4712 0 0 L 34 * * * * * * * * * 53 5878 * * * * * * 5691 * * 34 0 * * * * * * 4712 0 0 L 35 2603 4940 * 6969 5908 * * 2830 4118 3532 6885 * * * 3542 2266 4790 4606 * 3132 35 0 * * * * * * 4712 0 0 K 36 3388 6299 4217 4651 4370 5602 4964 5256 3334 3745 * 3897 * 3492 2944 2568 4750 7477 * * 36 0 * * * * * * 4712 0 0 A 37 1789 4970 5941 2695 * 5878 * * 3868 * 5578 6877 * 4520 3170 5052 2550 4735 * * 37 0 * * * * * * 4712 0 0 L 38 * * * * * * * 4867 * 150 * * * * * * * 3955 * * 38 0 * * * * * * 4712 0 0 E 39 2619 6856 2776 1653 * 4216 5680 5124 4738 6212 6127 5558 * 4894 4147 4128 5121 * * * 39 0 * * * * * * 4712 0 0 T 40 5381 5760 2777 2994 6849 5153 4503 6807 2648 4795 * 3708 * 3144 2962 4523 4672 * * * 40 26 5802 * 2585 263 * * 4712 1000 0 M 41 * * * * * * * 5352 5852 2378 485 4970 * * 5696 * * * * * 41 29 5640 * 2515 277 * * 4712 1435 0 F 42 * * * * 90 * * * * * * * 5802 * * * 6564 4970 * * 42 274 2812 5027 3108 178 * * 4712 2883 0 K 43 5010 5052 3118 4687 5475 1871 4420 6925 4828 7305 * 4039 5101 4749 3740 2770 5655 6019 * 6877 43 107 4309 5568 2610 258 * 0 4694 2311 1641 L 44 5765 3293 5467 4797 3631 3563 * 2093 4611 3085 4412 6816 6355 5727 5216 5328 3736 4355 * * 44 140 6225 3658 3160 171 600 1555 4685 1496 2322 T 45 5363 3657 5393 1998 3383 5981 * 5369 4289 4174 6259 4988 5088 6268 5474 2511 3751 * * 5591 45 240 5076 3013 1730 518 2287 331 4649 1851 2531 I 46 4438 * 3863 4723 6813 2691 * 2629 5528 2816 4497 4740 5524 3716 5377 4430 3590 5308 * * 46 132 4908 4213 3628 122 3119 176 4538 2117 3094 G 47 2931 * 6459 5422 * 2980 * 4446 * 2822 6694 2663 * 5541 5953 2350 3568 6467 * 5430 47 162 4469 4037 3343 150 2072 392 4524 1807 3158 E 48 3262 6181 2883 1950 6586 3837 5035 5413 6272 4703 * 6731 6693 4413 4602 3432 5314 4445 5012 * 48 47 * 4969 * * 2825 220 4487 0 3085 Y 49 4867 3865 3410 4898 3786 4508 5108 4942 4074 3523 4914 5491 4820 3959 4004 2775 4810 5202 * 5734 49 40 5182 * 2423 298 1735 515 4487 1661 3158 S 50 3989 3836 3908 4637 5530 2119 5944 6755 2879 3930 * 4461 6110 4750 3394 4020 5188 * * * 50 51 4847 * 1857 466 1293 756 4584 1883 3054 E 51 * 6143 3217 3179 * 2657 5953 * 4734 2207 5675 3941 6329 4489 4970 2777 * 6507 6860 * 51 79 7465 4393 2322 322 2455 291 4673 1000 2605 R 52 4294 * 4307 2692 * 6188 5795 6860 3787 3675 3538 5622 7158 4108 2250 3222 4636 5399 * * 52 280 5575 2684 4239 79 1182 838 4657 1627 2950 E 53 * * 1725 2179 * * * 5582 5455 2060 * 4607 6154 4415 * 4536 4742 6531 * * 53 63 5796 5351 3847 104 * 0 4389 1489 3152 G 54 3746 4746 2988 5196 3718 3005 6412 5724 * 2070 4643 5009 5276 * 6162 4464 4220 4166 * * 54 22 * 6049 * * 3340 150 4383 0 3343 Y 55 3392 5537 2411 4962 6282 3399 5175 6235 7320 3895 * 4681 3353 3703 4299 4302 4466 4811 5662 5305 55 54 4761 * 2385 307 2925 204 4371 1857 3314 K 56 4238 * 7044 6323 * 2864 5072 5951 3327 6416 5441 2674 3313 3486 4079 2730 4716 6088 * * 56 139 5485 3842 3527 131 2588 262 4418 1674 3183 G 57 4632 * 4343 3260 * 2375 6464 6707 3546 * * 5663 4747 * 3311 1954 3769 5844 * * 57 104 3852 * 2669 247 2588 262 4363 2385 3440 S 58 4714 4775 4078 6601 * 3379 6181 6410 2705 * 6483 4083 4953 4987 5976 1382 6419 5268 6714 * 58 69 4429 * 3073 183 3351 149 4364 1939 3198 E 59 5540 6510 2831 1324 6155 2415 5411 * 3863 * * 4429 6188 4499 5801 6431 * * * * 59 78 4255 * 3454 138 1366 708 4369 1892 3131 Y 60 6647 6580 * * 2366 * 2846 * * 5693 * * * * * * * 6592 1964 1472 60 0 * * * * 1506 626 4441 0 2253 A 61 3881 6312 6175 4358 * 6735 3080 3829 4161 3913 6591 * * 3589 5197 6105 3249 1756 * * 61 0 * * * * 0 * 4623 0 2130 P 62 5203 * * * 4558 * * 2738 * 1180 5920 * 3512 * * * 6552 2157 * * 62 13 6838 * 1000 1000 * * 4717 1000 0 T 63 3386 * * * 4382 * * 4081 * 3158 * * 4975 * * 7148 1690 1572 * * 63 0 * * * * * * 4717 0 0 Y 64 * * * * 3066 * 4975 * * * * * * * * * * * * 237 64 7 * 7634 * * * * 4717 0 0 E 65 6632 * 5004 1161 * * * * 5647 6105 * * * 2980 2795 * 2774 4061 * * 65 0 * * * * 0 * 4719 0 1000 D 66 * 6582 183 * * 5012 * * * * * 4027 * * * * 5920 * * * 66 18 6362 * 2322 322 * * 4717 1000 0 K 67 3319 * 3242 5463 5739 4150 5036 3672 1942 * 6276 3615 * 5799 3421 4722 4666 5791 * 5263 67 14 6652 * 0 * * * 4717 1000 0 D 68 6473 * 1838 734 * * * * * * * 6185 * 5886 * 4796 4595 * * * 68 0 * * * * * * 4717 0 0 G 69 7123 * 4495 5648 * 375 * * * * * 3518 * * 6378 4100 * * * * 69 0 * * * * * * 4717 0 0 D 70 4351 5697 443 4092 * 6512 * 5358 * 6450 * 4841 * * * 5885 * 5227 6358 * 70 0 * * * * * * 4716 0 0 W 71 * * * 6439 * * * 4247 5418 3279 3826 * * 6185 3001 6597 3848 2939 1358 * 71 0 * * * * * * 4716 0 0 M 72 * 6358 * * 5789 * * 6783 3023 2092 1014 * * * 4118 * 6512 5241 * 6273 72 0 * * * * * * 4716 0 0 L 73 6358 * * 6884 5010 * 3380 6733 * 551 4281 5348 5697 6515 6184 * 5644 6537 * 6709 73 0 * * * * * * 4716 0 0 V 74 2482 * * * * * * 4332 * 3377 * * 6649 * 5782 * 6644 651 * * 74 0 * * * * * * 4717 0 0 G 75 * * * 6166 * 42 * * * * * * * 6103 * * * * * * 75 0 * * * * * * 4717 0 0 D 76 5696 * 95 5787 * * * * * * * 5236 * * * * * * * * 76 0 * * * * * * 4717 0 0 V 77 6471 * 2484 2970 * * * 6795 * 3480 * * * * * * * 887 * 4543 77 0 * * * * * * 4717 0 0 P 78 * * * * * * * * * * * 4136 142 5733 * * 5779 * * * 78 0 * * * * * * 4701 0 0 W 79 * * * * 3060 * * * * * * * * * * * * * 246 4769 79 0 * * * * * * 4705 0 0 D 80 * * 3819 1759 * 3695 4612 * 2719 5643 6574 4541 4857 3853 3778 3213 * * 7429 * 80 0 * * * * * * 4705 0 0 M 81 6479 * 2901 1879 * * * 4760 * 3944 1664 4895 * * * 4564 5588 3861 * * 81 0 * * * * * * 4708 0 0 F 82 * * * * 50 * * * * * * * * * * 6038 * 5730 * * 82 0 * * * * * * 4704 0 0 V 83 4116 2981 * * * * * 3284 6354 2705 4673 * * 6038 6691 * 3931 1259 * * 83 0 * * * * * * 4704 0 0 T 84 3715 * 3926 3144 * 3287 * 5762 3054 * * 2812 6638 4807 3339 2752 4794 4960 * * 84 0 * * * * * * 4704 0 0 S 85 4305 4206 * * 6640 * * 5979 6632 6250 3137 5435 * * * 1224 2508 3246 * * 85 0 * * * * * * 4704 0 0 C 86 1948 2839 * * * * * 5617 * * 4960 * * * * * 6150 904 * * 86 0 * * * * * * 4704 0 0 K 87 * 6854 6225 5547 * * 5764 * 1159 * * * * 3554 1461 * 5678 * 5486 * 87 0 * * * * * * 4708 0 0 R 88 * 5132 * * * 6277 * * 2846 * * * 4960 * 426 6511 6640 * * 5496 88 0 * * * * * * 4704 0 0 L 89 * * * * * * * 1615 * 771 4180 * 4960 * * * * * * * 89 48 4947 * 0 * * * 4704 1000 0 R 90 * * * 4530 3515 * 5674 * 2624 5150 * * * * 1212 5769 2817 * * 3893 90 0 * * * * * * 4698 0 0 I 91 * * * * * * * 283 * 3649 * * * * * * * 3343 * * 91 0 * * * * * * 4698 0 0 M 92 4014 4203 * * * * * 5192 * 1524 1888 * * * * 6496 4958 3407 6864 3434 92 32 * 5530 * * * * 4665 0 0 K 93 5971 * * * * 6525 * * 1719 * 5285 4717 5481 * 1754 3073 2573 * * * 93 29 5660 * 1000 1000 * 0 4463 1000 1000 G 94 3688 * 3399 * * 2702 * * 3560 * * 5003 3005 5109 3396 2452 2980 * * * 94 0 * * * * 0 * 4314 0 1000 T 95 4170 5618 5262 2865 * 6039 * * * 5932 * 3683 3879 4766 * 931 5492 * * * 95 17 * 6458 * * * * 4348 0 0 E 96 4250 * 1845 792 * 4040 6193 * * * * * * * * 5867 * * * * 96 18 6354 * 1585 585 * 0 4298 1000 1000 A 97 1114 * 6356 * * * * 5013 5624 4358 * * 4836 5930 * 3574 4055 2118 * * 97 0 * * * * * 0 4330 0 1000 K 98 4428 * 3858 4301 5886 6500 5834 2939 3476 6068 * 3099 * 3422 3693 4296 3680 3133 * 5450 98 0 * * * * * 0 4286 0 1000 G 99 4804 5270 * * * 1505 * * 2881 * * 2100 * 3275 4082 4698 5952 * * * 99 0 * * * * 0 * 4226 0 1000 L 100 * * * * 4133 * * 4559 4484 1109 1836 * * 5590 * 4810 * 5182 * 5149 100 0 * * * * * * 4111 0 0 G 101 2267 6082 * 5503 * 1443 * * 5825 * 5797 4676 * * 5372 2217 3760 * * * 101 0 * * * * * * 4023 0 0 C 102 4233 3326 * * * * * 4033 * 3086 * * 766 * * 4710 * 4567 * * 102 0 * * * * * * 3538 0 0 G 103 2167 * * * * 802 * * * * * * * * 2295 * * * * * 103 0 * * * * * * 3115 0 0 V 104 2576 * * * * * * * * * 3473 * * * * 1774 2412 1932 * * 104 0 * * * * * * 2905 0 0 G 105 * * * * 3262 1115 * * * * * * 3196 * * 1621 * * * * 105 0 * * * * * * 2820 0 0 S 106 * * * * * * * * 1878 * * * * * * 458 * * * * 106 0 * * * * * * 2626 0 0 H 107 * * * * * * 503 * * * * * * 1763 * * * * * * 107 0 * * 0 * * * 1535 0 0 //