HHsearch 1.5 NAME c2m13A_ FAM FILE c2m13A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2m13A_.a3m DATE Sat Apr 6 08:24:51 2013 LENG 65 match states, 65 columns in multiple alignment FILT 24 out of 28 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.9 EVD 0.4856 2.9369 SEQ >ss_dssp CCCCCCTTTCSCBCTTTCSSBCSEEECSTTTCEEECHHHHHHHHSSTTSTTCCCBCSSCSCSCCC >sa_dssp EEEEDBEECEDCEADDDEEECADDBAECEECECAABEEBBEECBDEEDCEEBDDDDCDEEEEEEE >ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHCHHHHHHHHCCCCCCCCCCEEECCCCCCCC >ss_conf 98210544210010121785477217654499985655425662746300232600026777789 >Consensus xxVqIdPYLeDxxCxxCxxqxgpyFCrxxxCfkYyCxxCWxxxHsxxxxxxHkPlxrxxkxxxxx >c2m13A_ GPVQIDPYLEDSLCHICSSQPGPFFCRDQVCFKYFCRSCWHWRHSMEGLRHHSPLMRNQKNRDSS >UniRef50_Q9VCN7(762-821:915) Oo18 RNA-binding protein, isoform A n=9 Tax=Eumetazoa RepID=Q9VCN7_DROME E=1e-19 s/c=1.62 id=57% cov=94% --VQVDPYLEDALCSICGVQHGPYYCRELSCFRYFCRSCWQWQHSCDIVKNHKPLTRNSKSQ--- >UniRef50_UPI0000587D94(605-673:678) PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000587D94 E=7e-20 s/c=1.42 id=38% cov=98% --VEVKPYvLDDQMCDEcqgtrCGGKFAPFFCANVTCLQYYCEFCWATIHSRPGREFHKPLVKEGGDRPRS >UniRef50_A8QH11(219-274:348) Cytoplasmic polyadenylation element binding protein CPEB2, putative (Fragment) n=1 Tax=Brugia malayi RepID=A8QH11_BRUMA E=7e-17 s/c=1.58 id=34% cov=86% --IEIKPYLMDfAQCEMCNLADARYLCPELCCLMYMCEPCWTEVHKQRGLLHHRPMTK-------- >UniRef50_O01835(506-560:745) Cytoplasmic polyadenylation element-binding protein 3 n=5 Tax=Caenorhabditis RepID=CPB3_CAEEL E=8e-12 s/c=1.30 id=44% cov=85% --VQIDPFLESTCCMVCNSQSAHCFCRNKNCFKYYCHNCWALDHGKdDDQEVHIPVI--------- >UniRef50_Q03571(441-508:560) Cytoplasmic polyadenylation element-binding protein 1 n=9 Tax=Chromadorea RepID=CPB1_CAEEL E=1e-09 s/c=0.94 id=33% cov=89% --VEIKPYvMEEQYCDECEGrlckhNYAPYFCGHASCLQYYCEGCWDRMHIGKNEDNkledqHYPMVRTG------ >UniRef50_Q967R6(625-683:687) Cytoplasmic polyadenylation element-binding protein isoform 1 n=2 Tax=Aplysia californica RepID=Q967R6_APLCA E=4e-24 s/c=1.90 id=53% cov=92% --LQVDPYLGDAICSLCNSHQGNYFCRDLLCFKYLCRSCWYWQHAPDSMRQHRPLTRNTKS---- >UniRef50_A8NFV2(350-409:598) Cytoplasmic polyadenylation element binding protein 3, putative n=1 Tax=Brugia malayi RepID=A8NFV2_BRUMA E=4e-20 s/c=1.65 id=48% cov=92% --VQIDPFLEDAKCSQCECVQGPYFCREKSCFKYFCLQCWEVRHALTGpYGSHKPMIRTHRR---- >UniRef50_C4Q4X7(53-111:242) Phospholipase C beta, putative n=1 Tax=Schistosoma mansoni RepID=C4Q4X7_SCHMA E=5e-19 s/c=1.62 id=56% cov=91% --IQIDPYLEDAVCNSCLSYPGMYFCRAFECFNYFCPACWHmWHNSTETLYTHKPLRRTFK----- >UniRef50_Q6E3E7(465-524:526) CPB-2 n=1 Tax=Caenorhabditis sp. PS1010 RepID=Q6E3E7_9PELO E=2e-18 s/c=1.56 id=43% cov=86% --VEIKPYfFHNQSCEECSGryhrQHAPFFCPSLECFQYYCEPCWHKMHSHPSRFHHMPVIK-------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 P 2 * * * * * * * * * * * * 0 * * * * * * * 2 0 * * * * * * 1000 0 0 V 3 * * * * * * * 2339 * 3261 * * * * * * * 519 * * 3 0 * * * * * * 3095 0 0 Q 4 * * * 1504 * * * * * * * * * 627 * * * * * * 4 0 * * * * * * 3095 0 0 I 5 * * * * * * * 631 * 4356 * * * * * * * 1712 * * 5 0 * * * * * * 3095 0 0 D 6 * * 627 * * * * * 1504 * * * * * * * * * * * 6 0 * * * * * * 3095 0 0 P 7 * * * * * * * * * * * * 0 * * * * * * * 7 0 * * * * * * 3095 0 0 Y 8 * * * * 2693 * * * * * * * * * * * * * * 242 8 478 1825 * 0 * * * 3095 1757 0 L 9 * * * * 4128 * * * * 192 3894 * * * * * * * * * 9 0 * * * * * * 3095 0 0 E 10 * * 2368 658 * 4480 4128 * * * 3825 * * * * * * * * * 10 0 * * * * * * 3095 0 0 D 11 * * 381 3894 * * * * * * * 4128 * * * 3214 * * * * 11 106 3825 * 0 * * * 3095 1000 0 S 12 1792 * * * * * * * * * * * * 1825 * 1638 3214 * * * 12 50 4877 * 0 * * * 3095 1000 0 L 13 * 4251 * * * * * 3098 4416 2174 2325 * 4356 3825 * 4128 4177 3975 * 3894 13 0 * * * * * * 3095 0 0 C 14 * 0 * * * * * * * * * * * * * * * * * * 14 0 * * * * * * 3095 0 0 H 15 * * 2152 2969 * * 5027 * * * 3214 3357 * 4797 * 1414 * * * * 15 0 * * * * * * 3095 0 0 I 16 * * * 1825 * 5115 * 3291 5183 3121 2608 * * 4416 * 3975 4864 2883 * * 16 109 3777 * 2322 322 * * 3095 1058 0 C 17 * 0 * * * * * * * * * * * * * * * * * * 17 0 * * * * * * 3095 0 0 S 18 * * 4356 2737 5183 2969 3869 * * 3975 * 1942 * 4877 * 2406 5018 * * * 18 0 * * * * * * 3095 0 0 S 19 * 4416 * * * 1825 * 3480 * 3825 * * * * * 1971 4873 2174 * * 19 192 3006 * 2181 359 * * 3095 1421 0 Q 20 3825 * * 3264 * * 4480 * 3777 * * 3299 * 1095 * * * 3749 * 3975 20 128 3561 * 2322 322 * * 3095 1233 0 P 21 * * 3825 * 3199 * 2315 * * * * * 2132 2455 * 3214 4873 * * 3894 21 0 * * * * * * 3095 0 0 G 22 1119 * * * * 890 * * * * * * * * * * * * * * 22 0 * * * * * * 3095 0 0 P 23 * * * * * * 3214 5183 * * 3975 4480 544 * 3825 * * * * * 23 0 * * * * * * 3095 0 0 F 24 * 3214 * * 1515 * * * * * * * * * * * * * * 883 24 0 * * * * * * 3095 0 0 F 25 * * * * 162 * * * * 3825 * * * * * * * * * 4815 25 0 * * * * * * 3095 0 0 C 26 * 0 * * * * * * * * * * * * * * * * * * 26 0 * * * * * * 3095 0 0 R 27 3801 * * * * 3894 * * * * * * 2502 * 627 4752 * * * * 27 0 * * * * * * 3095 0 0 D 28 3329 * 2844 1541 * * 3399 * * * * 2207 * 4356 * 4128 * * * * 28 0 * * * * * * 3095 0 0 Q 29 3894 * * * 3975 * * 3008 3331 1496 * * 4864 3311 4177 * * 3313 * * 29 0 * * * * * * 3095 0 0 V 30 4797 3825 4177 3049 * * * * 5183 3784 5018 4251 4877 3830 * 2333 2806 3505 * * 30 50 4877 * 0 * * * 3095 1000 0 C 31 * 0 * * * * * * * * * * * * * * * * * * 31 0 * * * * * * 3095 0 0 F 32 * * * * 505 * * * * 1759 * * * * * * * * * * 32 0 * * * * * * 3095 0 0 K 33 * * 5183 * * * * * 1305 * 3825 3975 * 1825 2722 * * * * * 33 0 * * * * * * 3095 0 0 Y 34 * * * * * * * * * * * * * * * * * * * 0 34 0 * * * * * * 3095 0 0 F 35 * * * * 1235 * * * * 4480 3825 * * * * * * * * 1120 35 0 * * * * * * 3095 0 0 C 36 * 0 * * * * * * * * * * * * * * * * * * 36 0 * * * * * * 3050 0 0 R 37 * * * 1461 * * 2803 * * 4356 * * 3920 * 1401 * * * * * 37 0 * * * * * * 3050 0 0 S 38 3920 * * * 4747 3867 4742 * 4318 * * 4248 2927 3031 * 1442 3919 * * * 38 0 * * * * * * 3050 0 0 C 39 * 0 * * * * * * * * * * * * * * * * * * 39 0 * * * * * * 3050 0 0 W 40 * * * * * * * * * * * * * * * * * * 0 * 40 0 * * * * * * 3050 0 0 H 41 2593 * 3867 3576 * * 2375 * * 4840 * * * 2675 * 4178 2655 * * 3581 41 99 3920 * 0 * * * 3050 1000 0 W 42 * * 4178 3772 5084 * * 4699 4101 3564 * * * * 3867 * 3516 3536 1256 * 42 0 * * * * * * 3050 0 0 R 43 * * 3213 * * * 3301 2615 4741 * 2979 * * 1874 3092 * * 3772 * * 43 0 * * * * * * 3050 0 0 H 44 * * * * * * 99 * * * * 3920 * * * * * * * * 44 82 4178 * 0 * * * 3050 1000 0 S 45 3396 * * 4741 * 3283 * 3867 3772 * * 3140 * * * 972 * * * * 45 42 * 5121 * * * * 3050 0 0 M 46 * 3489 * * * 3852 4084 4776 4221 2638 3949 * 3505 3755 2070 * 3900 * * * 46 80 4221 * 0 * 0 * 3059 1000 1000 E 47 4840 * 2065 2359 * 4836 * * 3014 * * 5121 2545 * 3019 * 4356 * * * 47 91 4024 * 0 * * * 3050 1074 0 G 48 4741 * 2807 * * 1759 * 4777 * * * 3867 * 4840 * 2327 3105 4762 * 4967 48 72 4356 * 0 * * * 3050 1000 0 L 49 * * * 3867 4836 4178 * * * 1302 3715 * * 4248 2174 * * 4777 * 4356 49 0 * * * * * * 3050 0 0 R 50 * * 3867 2212 4101 4356 * * 4777 3772 * * * 3099 2004 4762 * * 5061 3920 50 0 * * * * * * 3050 0 0 H 51 * * 4318 * 3723 * 2173 * * 4819 * 2066 * 4436 * 3052 3920 3213 * 4742 51 102 3867 * 2322 322 * * 3050 1000 0 H 52 * * * * * * 0 * * * * * * * * * * * * * 52 0 * * * * * * 3050 0 0 S 53 * * * * * * * 3213 882 * 4101 * * 4762 2695 4984 * * * 3867 53 0 * * * * * * 3050 0 0 P 54 * * * * * * * * * * * * 0 * * * * * * * 54 0 * * * * * * 3050 0 0 L 55 * * * * * * * * * 718 2146 * * * * * * 2590 * * 55 0 * * * * * * 3050 0 0 M 56 * * * * * * * 2218 * * 2571 * * * 3920 4741 1829 2109 * * 56 0 * * * * * * 3050 0 0 R 57 * * * * * * * * 1610 * * * * * 573 * * * * * 57 0 * * * * * * 2878 0 0 N 58 * * * 2186 * * 4272 * * * * 1058 * * * * 2011 * * * 58 0 * * * * * * 2700 0 0 Q 59 * * * * 3542 1826 3733 * * * * * * 2830 * 1717 3157 * * * 59 0 * * * * * * 2628 0 0 K 60 3806 * * * * 2816 * * 624 * * * * * 2861 * * * * * 60 0 * * * * * * 2466 0 0 N 61 * * 2054 * * * * * * * * 3107 * * 2559 1473 3142 * * * 61 0 * * * * * * 2347 0 0 R 62 * * * * * * * * 2810 * * * * 2607 529 * * * * * 62 0 * * * * * * 2021 0 0 D 63 * * 1000 * * * * * * * * * 1000 * * * * * * * 63 0 * * * * * * 1536 0 0 S 64 * * * * * * * * * * * * * * 1000 1000 * * * * 64 0 * * * * * * 1536 0 0 S 65 * * * * * * * * * * * * * * * 0 * * * * 65 0 * * 0 * * * 1536 0 0 //