HHsearch 1.5 NAME c2m0cA_ FAM FILE c2m0cA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2m0cA_.a3m DATE Thu Jan 10 00:56:59 2013 LENG 75 match states, 75 columns in multiple alignment FILT 106 out of 1945 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.4 EVD 0.4445 0.4071 SEQ >ss_dssp CCSCCCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCCSSCC >sa_dssp EEEDEEEEEEEEEEDBEEEBDDBACDCADECCEBEEECCDDBBEEAEBECCEADEBAEECDDDDEEEEEEDEEEE >ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC >ss_conf 976768886887566899999999999988789888999999986179898999998689999999833421689 >Consensus sxxxxxxxxkrxRxxfsxxqxxxLexxfxxnxxPxxxxxxxLAxxxxlxxxxVxxWFqNrRxkxkkxxxxxxxxq >c2m0cA_ SHMSNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQMQQ >UniRef50_C4Q5B9(132-181:197) Nk-2 homeobox protein, putative n=1 Tax=Schistosoma mansoni RepID=C4Q5B9_SCHMA E=9e-06 s/c=1.03 id=25% cov=68% --LIRQRNRRKPRILFSQTQIYELERRFKQQRYLSSQEREQMANNLKMSAQQ----------------------- >UniRef50_A7S8C1(66-124:206) Predicted protein n=6 Tax=Nematostella vectensis RepID=A7S8C1_NEMVE E=1e-05 s/c=0.86 id=25% cov=80% --------QPRKRPVFHPDVVARLEQFFAKRRYINAEQQYELAKEINMTEEQIKSWLHNKRTAMKRK-------- >UniRef50_A9TEB4(1024-1104:1275) Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TEB4_PHYPA E=0.0007 s/c=0.56 id=20% cov=100% -HGDESQPKKRKRNIMSDQQVNVMEAALQLEPgmqrspkLIQQWTNHLNSIGPEVAYHQLKNWLNNRKARIARQEREKQRQE >UniRef50_A8WZ67(487-557:2140) Putative uncharacterized protein n=3 Tax=Caenorhabditis briggsae RepID=A8WZ67_CAEBR E=5e-07 s/c=0.79 id=25% cov=96% -NVGNSSTQKRARTRITDDQLKVLRQYFNINNSPSEAQIKEMSQKSGLPEKVIKHWFRNTLFKERQRDKDSP--- >UniRef50_UPI000180C3C8(240-307:519) PREDICTED: transcription factor protein n=1 Tax=Ciona intestinalis RepID=UPI000180C3C8 E=2e-06 s/c=0.79 id=26% cov=92% ------SRKRKKRTSIDAKKRTTLDKQFERNPKPSSEDLQAIAEECKMEKEVVRVWFCNRRQKQKRISQHEQQE- >UniRef50_B6IHS1(112-185:222) Putative uncharacterized protein n=1 Tax=Caenorhabditis briggsae RepID=B6IHS1_CAEBR E=0.0002 s/c=0.63 id=26% cov=92% -------KTKRTRRSHCKETTQILQAYFETSHHPSGLQMAQLAEVTGLNNKQVKAWFSNKRRSMRVQQMREEKEK >UniRef50_Q5EVH1(138-209:318) Irx-c n=1 Tax=Oikopleura dioica RepID=Q5EVH1_OIKDI E=4e-07 s/c=0.77 id=26% cov=97% SQLLHGAGARKNATRESTAPLKNWLKEHQKNPYPTKGEKVYLALISGMTLTQVSTWFANARRRLKKENKWSP--- >UniRef50_Q22810(204-271:278) Homeobox protein 41, partially confirmed by transcript evidence n=1 Tax=Caenorhabditis elegans RepID=Q22810_CAEEL E=0.0008 s/c=0.66 id=25% cov=87% ---SSSSPPKKTKSPFTEHEIAVMMALFEINKSPNHEEVQKLAVQLNLGYRSVANFFMNKRAKERKK-------- >UniRef50_B9RPF2(26-104:240) Homeobox protein, putative n=1 Tax=Ricinus communis RepID=B9RPF2_RICCO E=0.0003 s/c=0.58 id=23% cov=100% -QLPQTQRKKKdcaknSKRRFSDEQVRLLESIFESETKLEPRKKLLLAGELGLQPRQIAIWFQNRRARWKSKQIEQEYRK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 2101 * * * * * * * * * * * * * * 504 4017 * * * 1 0 * * * * * * 4880 0 0 H 2 * * 4911 * * 4162 1539 * * * * 2105 * 2409 4707 3773 * * * 4845 2 44 5068 * 0 * * * 5621 1000 0 M 3 * 5314 * 5231 4194 3462 5040 2567 5090 2008 4302 5286 5418 * * 3482 * 3286 4878 * 3 0 * * * * * * 5765 0 0 S 4 4058 * 2701 5251 * 5513 * 4007 * 4874 5148 3335 3755 3842 * 1432 * * * * 4 32 5532 * 2000 415 * * 5867 1000 0 N 5 4730 * 3997 2828 * 4601 4035 4665 4355 * * 2096 5640 3442 4379 2520 * * * * 5 0 * * * * * * 5985 0 0 K 6 4060 * 3245 5425 * 4251 3540 * 3016 * 6161 3472 4053 2805 3903 3239 3857 * * * 6 26 5801 * 1585 585 * * 6103 1000 0 G 7 4813 * 4645 4492 6157 1941 6195 * 4092 * * 6011 4341 3570 2675 2311 5265 * * * 7 0 * * * * * * 6153 0 0 K 8 6343 * * 4381 * 4142 5981 5758 1512 * 6211 6647 3644 3690 2543 3497 4135 * * * 8 0 * * * * * * 6289 0 0 K 9 4165 * * 5106 6482 4300 * * 2503 6017 * 4613 3543 2742 2612 2781 4346 6118 * 6302 9 0 * * * * * * 6324 0 0 R 10 4439 * 6282 6255 * * 5315 6753 1419 * 5445 * 4091 6808 1489 6496 4430 6032 * * 10 21 6911 7310 0 * * * 6325 1000 0 R 11 6605 * * 6767 6299 6505 * * 1631 * * 6633 5217 5429 882 6581 5593 * * * 11 42 5124 * 1810 484 0 * 6365 2109 1000 N 12 3914 * * 4333 * 5419 4262 4372 2680 6729 4537 3883 2903 4734 3199 4306 3637 4059 * 6287 12 44 * 5045 * * * * 6404 0 0 R 13 5194 * * * * * * * 3235 * * 6038 * 5085 327 6565 * * * 6154 13 45 * 5041 * * * 0 6337 0 2131 T 14 4888 6577 * * 6776 6275 4686 4287 4153 4749 6638 4562 4119 3707 4922 3442 1560 3977 5343 6444 14 71 6357 4812 2322 322 1602 576 6325 1000 3103 T 15 4674 5925 * 6333 5392 * 6781 4044 4011 3588 6415 5269 4927 5585 1817 3435 4404 2487 * * 15 19 7074 7432 3170 170 1250 787 6454 1000 3522 F 16 5850 * * 6161 1156 * 5411 2777 4605 2579 4475 * 5453 * * * * * 5785 4158 16 0 * * * * 336 2268 6499 0 2912 T 17 5656 6493 5073 5867 6305 * 5855 6131 4526 * 6479 4120 4460 5840 6747 1543 1513 * * * 17 0 * * * * 0 * 6537 0 1000 S 18 3977 * 2834 3595 * 5313 6010 5977 2819 * 6620 4795 2781 3802 4781 3440 3582 4650 * * 18 18 6339 * 0 * * * 6531 1000 0 Y 19 4583 * 3569 2208 4670 6918 5464 5738 3799 5303 * 6876 5977 3011 4914 3571 3906 4209 4585 4529 19 21 6135 * 0 * * * 6531 1000 0 Q 20 5426 * 5448 3789 * * 5744 * 6992 4563 * 4858 6294 675 * 3925 5673 4575 * 6428 20 31 6415 6678 1585 585 * * 6531 1000 0 L 21 6764 * * * * * * 4431 2557 1620 5826 * * 5885 3027 4822 4037 2353 * * 21 0 * * * * * 0 6528 0 1000 E 22 3079 5452 4147 3079 7093 5204 5819 5186 3506 6121 5854 3368 5381 2727 3476 4165 4387 7310 * 6255 22 0 * * * * 0 * 6528 0 1000 E 23 3237 * 6369 3486 5426 * 6821 1944 4868 4184 4764 5540 * 4224 4488 6927 3400 2717 * * 23 0 * * * * * * 6531 0 0 L 24 * 5242 * * 6399 * * 6698 * 219 3867 * * * * * * * 5353 * 24 15 6635 * 1585 585 * * 6531 1000 0 E 25 * * 5073 1159 * * 6873 5880 2575 4337 5705 4311 * 3487 3553 * 6649 6135 * 6415 25 0 * * * * * * 6531 0 0 K 26 2480 * 4376 3558 6750 4809 5903 * 3207 6880 * 4155 * 2884 2962 3236 4476 5270 * 6340 26 0 * * * * * * 6531 0 0 V 27 3051 4031 * 3305 3919 * 3788 3505 6576 3239 * 5009 * 4448 4742 4019 6960 4094 4050 3813 27 0 * * * * * * 6531 0 0 F 28 * * * * 665 * 4856 * * 4835 * * * * 5242 * * * 5270 2015 28 34 5432 * 2001 415 * * 6531 1646 0 Q 29 3193 5240 3712 2518 * 6402 6733 * 3424 4116 5476 3314 * 2626 3891 4772 5376 6750 * 5724 29 0 * * * * * * 6531 0 0 K 30 3663 6779 4464 2322 6933 * * 3861 3070 3992 6339 3898 * 3736 3546 4162 4290 4352 * 6428 30 93 4004 * 1351 718 * * 6531 2839 0 T 31 5710 4529 3514 3859 6830 4993 4817 4952 5058 * * 1235 * 4929 5861 4064 3354 * * 6559 31 12 6866 * 1585 585 * * 6531 1000 0 H 32 5115 * 4919 * * 5376 3832 5359 3609 5547 5771 4303 1387 3712 3262 4994 4242 * * * 32 86 4107 * 1996 416 * * 6531 2564 0 Y 33 * 6280 * * 3202 * 3087 5916 3171 4884 6501 4521 * * 3463 4232 5166 6964 * 1454 33 0 * * * * * * 6531 0 0 P 34 5394 * * * 6350 * * 3860 * 3103 * * 482 * 6297 6513 * 4669 * * 34 0 * * * * * * 6531 0 0 D 35 6576 6399 2383 7067 * 4085 6678 6297 5203 5242 * 3193 5138 5340 6625 1912 2284 * * * 35 0 * * * * * * 6531 0 0 V 36 2907 * 4809 4158 5679 5664 5474 4962 2927 4246 5050 5206 3569 4350 3073 3345 4035 5629 6977 * 36 0 * * * * * * 6531 0 0 Y 37 2905 * 3746 2366 5242 4592 * 5353 3941 4793 * 4936 5441 3943 4808 3490 4049 5977 4569 4620 37 57 5242 6369 1000 1000 * * 6531 1000 0 A 38 4122 * 3422 1854 * * * 5360 4322 5400 4316 6074 * 3107 3302 4550 2866 6345 * * 38 19 6286 * 1000 1000 * 0 6439 1000 1000 R 39 5283 5736 * * * * * 3102 2445 3256 4666 4816 * 3906 1385 * 6442 6065 * * 39 0 * * * * 0 * 6439 0 1000 E 40 3826 5345 5233 2072 5816 * 4716 5271 2946 4028 6701 4738 * 3125 3644 5506 4733 4395 * 5735 40 0 * * * * * * 6531 0 0 Q 41 4313 * 3602 2054 6880 6399 4387 4497 3493 3835 5924 5777 * 3345 3658 6595 3764 5257 * 4928 41 0 * * * * * * 6531 0 0 L 42 6320 * * * * * * 2125 * 695 4681 5340 * * * * * 4258 6369 6339 42 14 6698 * 3907 100 * * 6531 1000 0 A 43 658 6280 * * * 3965 * 5242 * * 5031 * * * * 2680 4408 5095 * * 43 0 * * * * * * 6531 0 0 M 44 4035 * 3454 2551 * 5233 5395 4595 2739 4388 4976 3653 * 3385 3805 5687 3854 * * 5593 44 13 6819 * 2807 222 * * 6531 1000 0 R 45 4494 * 4713 2567 5573 5340 5535 4663 2639 4756 5321 7233 * 2761 3196 4851 4700 4132 5270 * 45 0 * * * * * * 6531 0 0 T 46 4099 4069 * * 5446 4552 * 2809 * 1785 4635 * 5340 * * 3795 2434 4021 * * 46 0 * * * * * * 6531 0 0 D 47 5653 * 3951 3457 * 1251 6649 * 4089 * 6428 2453 * 3767 6949 4065 * * * * 47 68 4444 * 2753 232 * * 6531 2724 0 L 48 6225 6402 * * 5707 * * 3442 * 919 2574 * * * * 5606 5359 3038 * * 48 0 * * * * * * 6531 0 0 T 49 4266 * 4232 3601 * 5694 5063 * 5107 5757 * 4069 3055 5527 4960 1613 2689 * * * 49 0 * * * * * * 6531 0 0 E 50 4491 * 5038 2385 * 6158 * 4250 3193 4403 * 5398 3029 5923 6635 5134 3163 3280 * 3401 50 0 * * * * * * 6531 0 0 A 51 6124 6766 4644 3915 * 6568 4735 5241 2250 5375 * 6402 4199 4456 1981 3535 3187 * * * 51 0 * * * * * * 6531 0 0 R 52 4156 * * 4022 * * 4846 5114 4788 * * 5142 * 1362 3367 3931 3971 2849 * * 52 18 6329 * 3170 170 * * 6531 1000 0 V 53 * * 6833 * * * * 1543 * 4068 * * * * * 5238 5558 887 * * 53 0 * * * * * * 6627 0 0 Q 54 5267 6620 5257 4555 * 6718 5238 6825 1825 * * 4149 6686 2230 2849 4357 4473 5395 6557 5509 54 0 * * * * * * 6627 0 0 V 55 5684 * * 6598 4904 * 5668 2467 3868 * 5373 2062 * * * 4992 3207 1975 * 6626 55 0 * * * * * * 6627 0 0 W 56 * * * * 4469 * * * * * * * * * * * * * 67 * 56 0 * * * * * * 6632 0 0 F 57 * * * * 122 * * * * 4035 * * * * * * * 5618 * * 57 0 * * * * * * 6554 0 0 Q 58 3623 4844 * 5523 * 6855 4523 5789 3684 * 4496 4499 * 1006 5159 3836 6542 6561 * 6891 58 28 6838 6558 0 * * * 6554 1000 0 N 59 * * 6068 * * * 5003 * 6088 * * 147 * 4787 * * * * * * 59 10 7158 * 1585 585 * 0 6549 1000 1000 R 60 3594 6293 * 5555 * * 4096 * 2240 * * 4596 * 3811 1251 * 3638 * * * 60 29 6665 6611 1000 1000 * 0 6540 1000 1000 R 61 * * * * * * * * 4681 4895 * * * * 109 * * * * * 61 14 * 6734 * * 930 1074 6528 0 1642 A 62 1392 7030 * 5596 5619 * * 5412 4873 5790 4523 6534 * 2914 3079 3602 3938 6607 * 4987 62 0 * * * * 1052 950 6512 0 1606 K 63 4807 * * 4672 * 6844 5971 * 1276 5379 6909 5720 * 4700 1516 5480 6692 * * 5992 63 0 * * * * 0 * 6437 0 1000 W 64 4703 4227 2989 2690 4830 6179 5649 4730 4578 2948 3412 6084 * 4321 5775 4076 5163 * 4680 4439 64 26 5802 * 1625 565 * * 6514 1654 0 R 65 5084 * * 6357 * * 6170 * 1076 4118 6357 6010 6046 * 1436 * * * * * 65 19 6274 * 0 * * * 6509 1000 0 K 66 4029 * 4990 5964 * 5536 5648 * 1538 6283 * * 4998 4354 1561 4581 * 4975 * * 66 35 6544 6224 2000 415 * * 6541 1000 0 R 67 3861 * * 3283 * 6214 6147 4415 2479 4635 4310 6199 6546 2229 3322 3767 5486 6267 6673 5168 67 39 * 5224 * * 0 * 6494 0 1000 E 68 4228 * 4763 2561 6135 3595 6172 * 3079 4972 5776 5409 5902 2600 5175 2797 4823 6298 5985 5618 68 16 6538 * 0 * 918 1087 6456 1000 1613 R 69 4453 6124 5016 6138 * 5930 5860 6303 1705 4699 5826 6434 5282 3452 1591 6171 6487 * * * 69 0 * * * * 0 * 6576 0 1000 F 70 3501 5976 3413 3538 6602 4660 4632 5218 4600 3604 4088 5166 4575 3951 3366 3946 4931 4431 5259 6072 70 0 * * * * * * 6423 0 0 G 71 3572 * * 2849 * 2032 * 6570 2909 5114 * 4245 4995 3230 5873 3328 5019 5518 * * 71 0 * * * * * * 6404 0 0 Q 72 * * 6058 2594 * * 3780 6194 2826 5829 6128 5935 2674 2296 4288 3852 4533 * * 5666 72 0 * * * * * * 6402 0 0 M 73 4078 * * * 4328 5821 5182 3808 3463 3668 3151 * 4858 3280 2625 * 5274 2751 * 5753 73 0 * * * * * * 6228 0 0 Q 74 * * * 1496 * 5324 * * 4347 * * 4981 2377 1765 4235 * * * * * 74 0 * * * * * * 6008 0 0 Q 75 * * * 1370 * * * * 3189 * * * * 1154 4208 * * * * * 75 0 * * 0 * * * 5228 0 0 //