HHsearch 1.5 NAME c2m05A_ FAM FILE c2m05A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2m05A_.a3m DATE Sat Oct 26 08:23:07 2013 LENG 65 match states, 65 columns in multiple alignment FILT 25 out of 29 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.9 EVD 0.4159 0.0199 SEQ >ss_dssp CCCEEEEEECSSCCBCHHHHHHHHHHHHHHCCCTTSCCCEEEEEEECSBCSTTCBSEEEEEEECC >sa_dssp EEDDEDDCDDEECCCCDEEADECABECBEEDDCEEEEDBDCEDCDCDDEDEEECCCAADACBACE >ss_pred CCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCEEEEECCC >ss_conf 96320111163203588999999999630210356577057411322035688410102785789 >Consensus exCxFxHxxxxxxCxxxxxWxxxAxexCxxkxxxxxxxmxlxsfgmLlPCgxDxFxGVEfVCCPx >c2m05A_ EACQFSHVNSRDQCNDYQHWKDEAGKQCKTKKSKGNKDMIVRSFAVLEPCALDMFTGVEFVCCPN >UniRef50_UPI0001925F55(130-188:629) PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001925F55 E=1e-06 s/c=0.92 id=38% cov=92% DGCKFDHIHDPELCLTHKEWRRQAQRECSRKYS-----MKLKDYGILLSCKTDYFTGVEFVCCP- >UniRef50_UPI00016E8A97(137-195:622) UPI00016E8A97 related cluster n=2 Tax=Takifugu rubripes RepID=UPI00016E8A97 E=1e-06 s/c=0.92 id=38% cov=92% EKCKFFHKERMDLCVSHQQWHGVAKEACS------KSTMVLHSYGMLLPCGIDKFHGTEYVCCPS >UniRef50_C0JV68(145-200:740) Amyloid beta (A4) protein n=3 Tax=Echinoida RepID=C0JV68_PARLI E=3e-06 s/c=0.95 id=40% cov=88% --CKFYHKHDEQMCREPEYWKGVAEEDCRGKK------MGINSTGMLLPCGTDKFKGVEYTCCP- >UniRef50_C3XR12(102-159:666) Putative uncharacterized protein (Fragment) n=1 Tax=Branchiostoma floridae RepID=C3XR12_BRAFL E=3e-18 s/c=1.60 id=42% cov=91% -KCKFSHIHNSSVCTTFFKWRDAAKEAC------DKSGFDLHNFAMLKPCGVDLFTGVEFVCCPT >UniRef50_B7QN63(114-172:255) Secreted beta amyloid protein, putative (Fragment) n=1 Tax=Ixodes scapularis RepID=B7QN63_IXOSC E=1e-17 s/c=1.54 id=43% cov=92% EHCLFDHIHNQSVCQSFDDWNQTAAHSCQ------GRSMRLRSFAMLLPCGVDIFSGVEFVCCPT >UniRef50_A7T9V3(9-65:66) Predicted protein (Fragment) n=3 Tax=Eumetazoa RepID=A7T9V3_NEMVE E=1e-13 s/c=1.36 id=43% cov=89% -GCRFQHLHPGSECKSHDFWKIKAEEKCK------DQDANLRYYGVLLPCNTGLFTGVEFVCCP- >UniRef50_Q06BR2(130-188:612) Amyloid protein n=1 Tax=Loligo pealei RepID=Q06BR2_LOLPE E=2e-11 s/c=1.19 id=41% cov=91% EHCIFDHYHDPRVCNEFDQCNETAMSKCSA------RGMTTQSFAMLWPCQePGHFSGVEFVCCP- >UniRef50_Q52KN8(130-188:643) MGC115336 protein n=4 Tax=Euteleostomi RepID=Q52KN8_XENLA E=3e-22 s/c=1.78 id=43% cov=92% DKCRFLHREQMDVCESYQHWHETARTACAA------EDLDLHSYGMLLPCRLDRFRGVEYVCCPT >UniRef50_Q675U5(52-111:238) Alzheimer's disease amyloid A4 protein-like protein n=1 Tax=Oikopleura dioica RepID=Q675U5_OIKDI E=4e-11 s/c=1.16 id=42% cov=88% --CAFRHtpkVINGNNCKDVTSWRTVAQDVC------GENDFELHSFAPLATCADhDVYQGLQFVCCP- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * 1681 539 * * * * * * * * * * * * * * * * 1 0 * * * * * * 2591 0 0 A 2 3729 * * * * 1509 3212 * 1402 * * * * * 4629 4427 * * * * 2 0 * * * * * * 2812 0 0 C 3 * 0 * * * * * * * * * * * * * * * * * * 3 0 * * * * * * 3055 0 0 Q 4 3560 * * * * * * 4141 1630 2755 * * * 3150 1865 * * * * * 4 0 * * * * * * 3055 0 0 F 5 * * * * 0 * * * * * * * * * * * * * * * 5 0 * * * * * * 3055 0 0 S 6 * * 1912 * 2980 4049 * * * 2397 * * * 4383 3560 2626 * * * 4000 6 0 * * * * * * 3055 0 0 H 7 * * * * * * 0 * * * * * * * * * * * * * 7 128 3560 * 1585 585 * * 3055 1000 0 V 8 * * * * * * * 1684 2189 3577 * * * 2968 4010 * * 2843 * 4141 8 0 * * * * * * 3055 0 0 N 9 * * * 1529 * * 1140 3560 * * * 3121 * * * * * * * * 9 0 * * * * * * 3055 0 0 S 10 * * 2056 * * * * * 5063 * * 1688 4383 3009 2377 4196 * * * * 10 0 * * * * * * 3055 0 0 R 11 4592 * * 4000 * 2914 * * * 5029 1662 * 3088 3228 3121 3691 * * * * 11 0 * * * * * * 3055 0 0 D 12 * * 1679 2740 * * * * * * * 3560 * 3024 4141 2073 4801 * * * 12 0 * * * * * * 3055 0 0 Q 13 4711 * * 4383 * * * * 4801 3461 3526 3560 * 3382 3657 3419 4087 1796 * * 13 0 * * * * * * 3055 0 0 C 14 * 0 * * * * * * * * * * * * * * * * * * 14 0 * * * * * * 3055 0 0 N 15 * * * 1797 * * * * 2629 4036 * 2543 * 4921 4000 * 3691 5068 3119 * 15 0 * * * * * * 3055 0 0 D 16 * * 2324 2689 * * * * * * * 4105 4592 4725 * 1437 2853 * * * 16 0 * * * * * * 3055 0 0 Y 17 * * * * 2021 * 1645 * * * * * 4000 * * 3694 * 3560 * 2257 17 0 * * * * * * 3055 0 0 Q 18 3348 * 2861 4000 3691 * 4801 * 4036 4205 * * * 2038 * * 2986 3272 * * 18 0 * * * * * * 3055 0 0 H 19 * * 4921 4036 4383 * 1745 * 3691 * * * * 3531 2675 3560 * * * 2694 19 0 * * * * * * 3055 0 0 W 20 * 4141 * * * * * * * * * * * * 4594 * * * 149 * 20 0 * * * * * * 3055 0 0 K 21 * * * * * * 1529 * 2149 * * 2288 * * 2164 * * * * * 21 0 * * * * * * 3055 0 0 D 22 3763 * 2378 3493 * 3437 * 4383 * * * 3318 * 3109 4036 * 2135 * * * 22 0 * * * * * * 3055 0 0 E 23 2859 * * 3382 * * * 4010 4383 * * * * 4036 * * 2077 1481 * * 23 0 * * * * * * 3055 0 0 A 24 151 * * * * 4592 * * * * * * * * * * * 4105 * * 24 0 * * * * * * 3055 0 0 G 25 3180 * * 3179 * 3436 * * 1645 * 4141 * * 2418 4959 * 5029 * * 4049 25 0 * * * * * * 3055 0 0 K 26 4592 * 3051 1079 * * 4921 * 3121 * * * * 5110 3340 4141 4959 * * * 26 0 * * * * * * 3055 0 0 Q 27 1251 * 4000 3475 * * 4049 * 3257 * * * * 4196 * 4125 3926 3560 * * 27 0 * * * * * * 3055 0 0 C 28 * 0 * * * * * * * * * * * * * * * * * * 28 423 * 1976 * * * * 3055 0 0 K 29 4549 * * * * * * * 2118 3119 4389 * * 3226 2996 2011 3578 * * * 29 444 * 1915 * * * 0 2828 0 2060 T 30 1560 * * * * 3403 * * * * * * * * 3245 3801 1362 * * * 30 883 * 1127 * * * 0 2577 0 2419 K 31 * * 2792 2801 * * * * 490 * * * * * * * * * * * 31 288 * 2466 * * * 0 2177 0 2698 K 32 * * * * * * * * 1089 * * * * * * 2602 * 2658 * 2275 32 1016 * 984 * * 2631 254 2026 0 2814 S 33 * * 2063 * * * * * * * * * * * * 932 * 2080 * * 33 468 * 1853 * * * 0 1849 0 2891 K 34 * * * * * * * * 565 * * * * * * * * 1626 * * 34 0 * * * * 1925 441 1513 0 2928 G 35 2958 * 3433 * * 908 * * * * * 2752 * * * 3363 * * * * 35 0 * * * * 1640 558 2242 0 2683 N 36 * * 1398 2468 * 3049 * * 2833 * * 3088 * 4036 * * * * * * 36 0 * * * * 768 1277 2547 0 2358 K 37 * * * 3337 4370 * * * 2339 * * 3380 * 2223 1914 3654 * * * * 37 0 * * * * * 0 2810 0 1899 D 38 * * 1623 * * 1627 * 4807 * * * 2940 * * 3706 3862 4639 * * * 38 0 * * * * 0 * 2810 0 1899 M 39 4420 * * * 2910 * * * * 2244 715 * * * * * * * * * 39 63 * 4549 * * * * 3056 0 0 I 40 3942 * 3723 2613 * 3995 * 3312 3983 * * 2849 * 4567 3745 * 2788 3865 * * 40 0 * * * * * 0 3028 0 1000 V 41 * * * * * * * 3995 * 487 4567 * * * * * 4180 2986 * * 41 0 * * * * 0 * 3028 0 1000 R 42 * * * * * * 1179 * 4046 * * 4007 * 4201 1627 * * * * 4124 42 0 * * * * * * 3056 0 0 S 43 * * 2951 * * 4684 * * * * * 3712 * * 5080 640 4737 * * 4420 43 0 * * * * * * 3056 0 0 F 44 * * * * 1071 * * * * * * * * * * 4196 4007 * * 1296 44 0 * * * * * * 3056 0 0 A 45 1071 * * * * 932 * * * * * * * * * * * * * * 45 0 * * * * * * 3056 0 0 V 46 * * * * * * * 4046 * * 526 * 3576 * * * * 2633 * * 46 0 * * * * * * 3056 0 0 L 47 * * * * * * * * * 0 * * * * * * * * * * 47 0 * * * * * * 3056 0 0 E 48 3576 * * 3127 * * * * 3712 575 * * * * * * * * 4201 * 48 0 * * * * * * 3056 0 0 P 49 * * * * * * * * * * * * 225 * * 4046 3576 * * * 49 0 * * * * * * 3056 0 0 C 50 * 0 * * * * * * * * * * * * * * * * * * 50 0 * * * * * * 3056 0 0 A 51 2507 * * * * 664 * * 4046 * * 4420 * 4201 4995 * * * * * 51 176 4201 4044 0 * * * 3056 1000 0 L 52 * * 3548 * * * * 2250 * 2673 * * 3754 * * 4568 2481 1988 * * 52 129 3548 * 0 * 0 * 3028 1000 1073 D 53 * * 379 * * 3099 * * * * * * * * * 3130 * * * * 53 0 * * * * * * 3056 0 0 M 54 * * * 5089 * * 3601 4933 3447 1749 4203 * * 3930 2307 * * 3576 * 4046 54 0 * * * * * * 3056 0 0 F 55 * * * * 126 * * * * * * * * * * * * * * 3576 55 0 * * * * * * 3056 0 0 T 56 * * * * * * 3094 * 4007 * * * * 3576 2074 2312 1747 * * * 56 0 * * * * * * 3056 0 0 G 57 * * * * * 0 * * * * * * * * * * * * * * 57 0 * * * * * * 3056 0 0 V 58 4725 * * * * * * * * 3576 * * * * * * 3094 394 * * 58 0 * * * * * * 3056 0 0 E 59 * * * 126 * * * * * * * * * 3576 * * * * * * 59 0 * * * * * * 3056 0 0 F 60 * * * * 652 * * * * * * 5046 * * * * * * * 1585 60 0 * * * * * * 3056 0 0 V 61 * * * * * * * * * * * * * * * * 4007 93 * * 61 0 * * * * * * 3056 0 0 C 62 * 0 * * * * * * * * * * * * * * * * * * 62 0 * * * * * * 3056 0 0 C 63 * 0 * * * * * * * * * * * * * * * * * * 63 0 * * * * * * 3056 0 0 P 64 * * * * * * * * * * * * 0 * * * * * * * 64 0 * * * * * * 3055 0 0 N 65 * * * * * * * * * * * 2011 * * * 2562 780 * * * 65 0 * * 0 * * * 2012 0 0 //