HHsearch 1.5 NAME c2ly8A_ FAM FILE c2ly8A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2ly8A_.a3m DATE Wed Jan 9 19:59:21 2013 LENG 121 match states, 121 columns in multiple alignment FILT 146 out of 156 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.1 EVD 0.3854 -1.7124 SEQ >ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCB CHHHHHHHHHHTTCGGGGCCC >sa_dssp EEEDDDDAEECCDDACEBAEDDDEBECCEDADDAADCBCDBCEEBDEDECDEDEEEEEDEDEEEEEDECEDDCEDECDEBACCAAEBACEDBDEDEEDCA CBEBADDABDEDDDEEEEEDE >ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC CHHHHHHHHHHCCCCCCCCCC >ss_conf 9753005699999999824787451451999999999999999999976368788523466888622258999999999999999999997310788113 499999999972983325579 >Consensus LIpKlpFxRLVREIxxxxxxxxxxxRxqxxAlxALQeAaEayLVxlfedaxlcaxHxxxxGVkRIsxxIYeeirxvlkxxlxxiixdxxxyxehaxRKTV txxDVvxxLrRqGxxxyGfxx >c2ly8A_ LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTV TSLDVVYALKRQGRTLYGFGG >UniRef50_Q8SQP4(45-103:103) Histone H4 n=1 Tax=Encephalitozoon cuniculi RepID=H4_ENCCU E=0.0005 s/c=0.78 id=30% cov=50% ------------------------------------------------------------GVRRVGGGCFKEINNAAREYIRDTLSIACIYATHAKRKTI TCSDILHSLKRMGIKYIGY-- >UniRef50_B4JVI5(84-140:163) Histone H3 n=1 Tax=Drosophila grimshawi RepID=B4JVI5_DROGR E=3e-09 s/c=1.10 id=33% cov=47% MIPRTAFGRVVREILQKHTRYQNSFRITMSALLALQTASELYMTQRFEDSYLMTLH-------------------------------------------- --------------------- >UniRef50_Q8JKV9(927-979:1111) Histone h3, h4 n=1 Tax=Heliothis zea virus 1 RepID=Q8JKV9_9VIRU E=0.0005 s/c=0.86 id=35% cov=45% ------------------------------------------------------------GIDRISKDVYPELSRIIEFFMKEVKRRVTLLVECGKRKTV EIRDIKSILKSVG-------- >UniRef50_A0CDN4(56-114:116) Histone H4 n=2 Tax=Paramecium tetraurelia RepID=A0CDN4_PARTE E=1e-10 s/c=1.15 id=37% cov=50% ------------------------------------------------------------GVKRISSDVYELSKLYMKLYISNILRDSMIYANYSGRATI LADDICRAAKRAGQTAIGF-- >UniRef50_Q3LW75(36-93:95) Histone H4 n=1 Tax=Bigelowiella natans RepID=Q3LW75_BIGNA E=6e-09 s/c=1.07 id=31% cov=49% ------------------------------------------------------------GIKRMSCTIYAEINKFIVEFLTKIVKDIIIFCRYENRTLI KVSDVLVVLRRYGKMYYG--- >UniRef50_Q9HGK9(401-450:479) Uncharacterized protein C800.13 n=1 Tax=Schizosaccharomyces pombe RepID=YHLD_SCHPO E=1e-07 s/c=1.15 id=35% cov=42% --------------------------------------------------------------KKIAGSVIEELTTASELFFKQIANDLSAFADHAHRKTI DTQDVVLLMKRQ--------- >UniRef50_B7PCF3(63-114:144) Histone H3 n=2 Tax=Ixodes scapularis RepID=B7PCF3_IXOSC E=8e-07 s/c=1.05 id=30% cov=44% -IRQLPFHRLVQRIAPKYITA---FWFRKEVLALLQRISEAYLTCQFKHSSACSYH-------------------------------------------- --------------------- >UniRef50_Q9MBF6(74-126:149) Histone H3-like 1 n=1 Tax=Lilium longiflorum RepID=H3L1_LILLO E=2e-09 s/c=1.20 id=33% cov=45% LIPHSPFMRLVRELAAEFL---DDCRFAAETFIMLKEVVEDELVNHFGNVQICSIH-------------------------------------------- --------------------- >UniRef50_Q54Z32(240-300:315) Histone H3 n=1 Tax=Dictyostelium discoideum RepID=Q54Z32_DICDI E=3e-09 s/c=1.03 id=33% cov=45% LLPLLSFSRLAREILDGFGT---NLRITPGCLIALQYAFESHMTLILENCGIMAFY-------------------------------------------- --------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * 3865 * 196 4438 * * * * * * 6315 * * 1 0 * * * * * * 4174 0 0 I 2 * * * * 5102 * * 399 * 2672 * * * * * * * 4173 * * 2 0 * * * * * * 4260 0 0 S 3 4716 * * 5965 * * 7298 * 4496 5482 * 6132 918 4358 1994 5078 * * * * 3 0 * * * * * * 4260 0 0 K 4 6349 * * * 4915 * 5309 * 584 5941 * * * 5274 2430 5620 6132 * * * 4 0 * * * * * * 4260 0 0 I 5 2186 * * * * 4580 * 4589 5785 994 5884 6157 * 6440 4568 3651 6315 * * * 5 0 * * * * * * 4260 0 0 P 6 4776 5383 * * * * * 6547 * * * * 463 5401 5023 3253 6580 4890 * * 6 0 * * * * * * 4232 0 0 F 7 * * * * 78 * * * * 6161 5385 * * * * 6072 * * * * 7 0 * * * * * * 4319 0 0 A 8 1894 5066 * 4815 * 4738 4423 4777 * 6561 4681 5605 * 2325 5153 2268 * 4662 * * 8 0 * * * * * * 4319 0 0 R 9 5987 * * * * * * * 3786 * 6392 * * * 180 5892 * * * * 9 0 * * * * * * 4319 0 0 L 10 5904 5605 * 6316 6138 * * 4746 * 475 5929 * * * * * * 2618 * * 10 0 * * * * * * 4319 0 0 V 11 4052 4960 * * * * * 3164 * * * * * * * * * 329 * * 11 17 6451 * 3807 107 * * 4319 1000 0 K 12 * * * * * * 5356 * 2557 * * * * 4678 383 * * * * * 12 0 * * * * * * 4318 0 0 E 13 * * 4286 374 * 4970 * * 5278 * * * * 6521 5266 3933 * * * 5868 13 12 6892 * 0 * * * 4347 1000 0 V 14 * 6170 * * 5187 * * 727 * 2623 6544 * * 6070 * * 5782 2751 * * 14 24 * 5903 * * * * 4347 0 0 T 15 1914 3707 * * * 6141 * 3510 * 3171 3941 * * 6127 7081 3643 2530 3249 * * 15 135 5235 3988 1063 940 * 0 4343 1590 1461 D 16 4094 5158 4060 4354 * * 4630 5586 5012 3268 4417 4406 5246 1638 3926 6425 5037 4383 * 6499 16 95 * 3976 * * 1215 813 4329 0 2691 E 17 6778 * 2457 1917 5850 5861 6097 * 3100 4636 5489 3180 * 3916 6488 3737 4982 6456 * 6659 17 99 * 3918 * * 1255 783 4265 0 2711 F 18 6620 5395 * * 1799 6337 5571 3290 5306 2978 4200 5859 * 6006 6333 6508 * 4476 5183 2266 18 157 * 3277 * * 1657 550 4226 0 2797 T 19 4618 4374 6223 5750 5105 4332 * 4026 2891 3422 5262 * 5469 5498 5327 2853 2891 3712 5173 4716 19 260 7306 2658 0 * 1013 988 4234 1000 3021 T 20 4613 * 4558 * * 4143 * 4967 * 5291 * 6628 2349 4745 4045 2299 1982 5273 * 5952 20 320 * 2328 * * 1519 619 4140 0 3484 K 21 3145 6219 4123 4266 5270 3195 4229 * 3274 * 5400 3228 4374 4738 3166 3107 * 6072 * 6161 21 165 4997 3707 3084 181 1238 795 3977 1496 3519 D 22 5196 * 3180 3814 6680 1999 5537 * 4201 4729 * 2801 4977 5134 4811 3586 4895 * 6373 4341 22 120 4763 4551 1261 779 1442 662 4011 1571 3241 Q 23 3661 * 3091 2217 * 4779 5098 5291 5749 4509 * 4250 4258 3943 3767 3944 5276 3874 5769 6130 23 49 7455 5187 0 * 643 1476 4074 1000 3014 D 24 6068 * 1787 3059 * 3821 4189 5601 * * 5172 3525 3015 5298 5764 3524 5975 4503 * * 24 43 * 5082 * * 0 * 4211 0 2737 L 25 * 4539 6679 6845 2322 6548 * 3140 * 1570 4391 6947 * 6569 * 5689 * 4311 5221 3125 25 12 6873 * 0 * 0 * 4308 1000 1658 R 26 6705 * * * * * 6388 6259 3791 * 6906 6446 * 4734 334 7686 * * 4735 * 26 0 * * * * * * 4325 0 0 W 27 * * * * 1269 * * 2217 * * 5679 * * * * * 6660 4871 1946 4418 27 0 * * * * * * 4325 0 0 Q 28 4336 * 5950 5137 * * 6875 * * * * 6738 * 1119 3524 4391 1824 * 6582 * 28 0 * * * * * * 4325 0 0 S 29 2041 * 4938 5938 * 4111 6503 6268 3909 6225 5579 * 3019 6822 3765 2154 5053 4145 * 6921 29 0 * * * * * * 4325 0 0 M 30 4096 * 3340 1995 6596 3423 6110 6388 6882 5958 4944 5378 4987 3102 * 2524 4508 7229 * 6906 30 0 * * * * * * 4325 0 0 A 31 339 4198 * * * 6268 * * * * * * * * * 3728 4620 5274 * * 31 0 * * * * * * 4325 0 0 I 32 * * * * 4779 * * 1845 * 842 4456 5625 * * * * * 4021 * * 32 0 * * * * * * 4325 0 0 M 33 3468 * 4022 2399 * 5954 5638 4163 * 1805 3919 5015 6039 3595 * 5379 * 4032 * * 33 0 * * * * * * 4359 0 0 A 34 271 5029 * * * * * * * 4781 5377 * * * * 4575 6114 5394 * * 34 0 * * * * * * 4359 0 0 L 35 6614 * * * 5532 * * 3844 * 243 5717 * 6039 * * * * 5680 * * 35 0 * * * * * * 4359 0 0 Q 36 * * * 6039 * * 4490 * 5377 * * * * 126 * * * * * * 36 0 * * * * * * 4359 0 0 E 37 5225 5114 * 561 5065 * * * * 6177 * * * 5081 5257 5001 3403 5295 * 5964 37 0 * * * * * * 4359 0 0 A 38 436 5975 * * * * * 4651 * 6908 6180 * * * * 3166 6169 4114 * * 38 0 * * * * * * 4359 0 0 S 39 1199 4614 * * 4651 * * 6052 * 6010 * * * * * 2095 3086 3304 * * 39 0 * * * * * * 4359 0 0 E 40 * * * 0 * * * * * * * * * * * * * * * * 40 0 * * * * * * 4359 0 0 A 41 994 5530 3146 5600 5847 5945 * 4896 * 5049 3785 5293 6478 5804 * 3890 7128 5042 * 6243 41 0 * * * * * * 4359 0 0 Y 42 * * * 4377 1618 * 4000 * * * 5629 * * 5394 * * 6570 6029 * 1018 42 0 * * * * * * 4359 0 0 L 43 5373 * * * * * * 2853 * 515 3548 * * * * 6177 * 4704 * * 43 0 * * * * * * 4359 0 0 V 44 * 6566 * * * 6587 * 3257 * * * * * 5776 * 6300 2337 631 * * 44 0 * * * * * * 4362 0 0 G 45 5664 5262 4559 3579 * 2599 3160 * 3675 4943 6929 4446 * 2395 4036 3009 6514 * * * 45 0 * * * * * * 4253 0 0 L 46 * * * 6334 4119 * 5271 3860 * 793 3917 * * 5262 3677 * 7107 3958 * 5961 46 0 * * * * * * 4253 0 0 L 47 * * * * 562 * * * * 2057 3605 * * * * * * * * * 47 0 * * * * * * 4253 0 0 E 48 4303 * * 560 * 4655 * * 4541 * * 6500 * 3286 6254 4325 * 6402 * * 48 0 * * * * * * 4253 0 0 H 49 5812 6342 657 4757 * 4787 4548 5974 * 6221 5502 3965 * 4973 * 6700 6188 5356 * 5348 49 0 * * * * * * 4225 0 0 T 50 1270 3254 * * * 5013 * * * * * * * * * 1958 2779 4427 * * 50 0 * * * * * * 4225 0 0 N 51 * * 5591 * * 4621 6233 6434 * 4860 4726 1389 * 2664 * 4421 4890 6135 * 2271 51 0 * * * * * * 4225 0 0 L 52 4191 * * * * * * 3485 4873 735 3686 5944 6080 6233 3844 * * 6705 * 5664 52 0 * * * * * * 4225 0 0 L 53 4043 1020 * * * * * 4790 * 2083 3863 6842 * * 6080 6434 * 4678 * 5000 53 20 * 6188 * * * * 4225 0 0 A 54 757 4239 * * * * * * * * * * 6481 * * 2835 2403 6079 * * 54 0 * * * * * 0 4206 0 1000 L 55 6606 * * 6344 4863 * * 1438 6565 1841 4936 5088 * 4633 4177 5221 6501 5376 * 3952 55 0 * * * * * 0 4201 0 1000 H 56 * * * * * * 43 * * * * * * * 7345 * * * * 5447 56 0 * * * * * 0 4157 0 1000 L 57 * * * * * * * * * 2096 * * * * 750 * * 2544 * * 57 0 * * * * * 0 1994 0 1000 V 58 * * * * * * * * * 1000 * * * * * * * 1000 * * 58 0 * * * * * 0 1274 0 1000 P 59 * * * * * * * * * * * * 0 * * * * * * * 59 0 * * * * * 0 1274 0 1000 R 60 * * * * * * * * * * * * * * 0 * * * * * 60 1000 1000 * 1000 1000 * 0 1274 1000 1000 G 61 * * * * * 0 * * * * * * * * * * * * * * 61 0 * * * * * 0 3641 0 1000 S 62 * * * * * * * 2156 * * 5307 * * * * 5419 * 460 * * 62 0 * * * * * 0 3641 0 1000 K 63 4642 * 3917 * * * * * 371 * * * * * 3841 * * * * 4309 63 0 * * * * * 0 3781 0 1000 R 64 * * * * 4523 * * * 3857 * * * * * 172 * * * * * 64 0 * * * * * 0 3781 0 1000 I 65 * * * * * * * 310 * * 3333 * * * * * * 3412 * * 65 0 * * * * * 0 3781 0 1000 S 66 3296 * * * * 3841 * * 4309 4874 * 4642 * 3819 * 660 * * * * 66 0 * * * * * 0 3781 0 1000 G 67 1903 4114 * * * 1451 * * 2867 * * 4309 * * * 3038 * * * * 67 0 * * * * * 0 3781 0 1000 L 68 * * 1967 3724 * 3877 * 5430 * 3421 3830 * * * 4698 2485 2348 * * * 68 0 * * * * * 0 3785 0 1000 I 69 * 4114 * * * * * 1004 * 4034 * * * * * * * 1386 * * 69 0 * * * * * 0 4277 0 1000 Y 70 * * * * 4341 * * 3638 * * * * * * * * * * * 200 70 0 * * * * * 0 4401 0 1000 E 71 4563 * 2008 1306 * 5404 * * 2892 * * 4987 3125 * * * * * * * 71 0 * * * * * 0 4545 0 1000 E 72 * * 3151 704 * * * 3959 * 4126 5066 * * * * * 3450 5027 * * 72 0 * * * * * 0 4545 0 1000 V 73 3638 * * * * * * 1786 * 2712 * * * * * 3637 3313 1755 * * 73 0 * * * * * 0 4545 0 1000 R 74 * 4640 * 3105 * * * * 4126 * * 3108 * * 878 4284 4918 4576 * * 74 0 * * * * * 0 4545 0 1000 A 75 3911 * 4959 2771 4939 3389 5671 4915 2148 4126 * 4539 * 5308 2758 * 3737 * * * 75 0 * * * * * 0 4545 0 1000 V 76 2317 3105 * * 4563 * * 3207 * * * * * * * 4576 * 1206 * 4126 76 0 * * * * * 0 4545 0 1000 L 77 4557 * * * 5288 * * 3102 * 754 4197 * * * * 3294 * * 4645 5272 77 0 * * * * * 0 4550 0 1000 K 78 * * 3645 2708 * * * 3507 1105 4047 * 4449 * * 3923 * * 4579 * * 78 0 * * * * * 0 4550 0 1000 S 79 3298 * 3279 2745 4290 * * 3180 4027 3524 4599 * * 4256 4185 3812 5453 3414 * * 79 0 * * * * * 0 4550 0 1000 F 80 * * * * 1337 * * * * * * * * * 1834 * * * * 1627 80 0 * * * * * 0 4455 0 1000 L 81 * * * * 1882 * * 3816 * 963 3843 * * * * * * 3740 * * 81 0 * * * * * 0 4455 0 1000 E 82 4294 * 4432 1576 * * * * 2558 * * 5697 * 3755 2561 3603 4255 * * * 82 51 4845 * 0 * * 0 4455 1000 1000 S 83 * 4845 3013 3178 * 6456 4263 * 4246 5076 3401 3237 * 2336 5417 4265 3417 5862 * * 83 0 * * * * * 0 4455 0 1000 V 84 3718 * * 5518 * * * 1204 * 2575 5396 * * * * * 5087 2017 * * 84 0 * * * * * 0 4444 0 1000 I 85 3986 3024 * * * 4807 * 1535 4461 2470 * * * * * 3606 * 2996 * * 85 0 * * * * * 0 4444 0 1000 R 86 * 5518 2931 4224 * 5120 4105 * 3491 4860 * 3726 * 4582 1369 4449 * * 4923 * 86 0 * * * * * 0 4444 0 1000 D 87 * 3780 680 * * * * 5088 * * * 4451 * 3934 3275 * * 4863 * 5322 87 0 * * * * * 0 4438 0 1000 S 88 2837 3897 * * * * * 3132 * 1622 4863 * * * * 2370 * 2987 * * 88 0 * * * * * 0 4438 0 1000 V 89 3467 4091 * 2364 * 5377 * 3310 * * 4617 * * * * 4163 2933 1816 * 5622 89 43 5077 * 2322 322 * 0 4438 1000 1000 T 90 1769 * * 3934 * * * 2523 5163 4465 * * * * * 3568 1880 4716 * * 90 0 * * * * * 0 4438 0 1000 Y 91 5077 4947 * * 2827 4863 4868 5093 * 3426 * 5322 * * * * * 3534 * 1015 91 0 * * * * 0 * 4438 0 1000 T 92 1953 4235 * * * * * 4067 * 3441 * * * * * 3565 1637 2934 * * 92 50 4873 * 0 * * * 4489 1000 0 E 93 5690 * 2709 1191 * * 5645 * 3847 * * 4676 3979 4709 5037 4746 3928 * * 5257 93 0 * * * * * * 4489 0 0 H 94 * 3570 * * * 5163 963 * * * * 5094 * * * 2981 * * * 2191 94 0 * * * * * * 4489 0 0 A 95 961 5569 * 4235 * 3209 5094 * * * * * * * 3660 2576 5163 * * * 95 41 5163 * 2322 322 * * 4489 1000 0 K 96 * * * 3658 * 1603 5915 * 1673 * * 3072 * * 3067 5437 * * * * 96 0 * * * * * * 4489 0 0 R 97 3650 * * * * * * * 3817 * * * * * 349 3961 * * * * 97 0 * * * * * * 4489 0 0 K 98 4672 * * * * * * * 343 * * 5806 * * * 3961 3959 5255 * * 98 0 * * * * * * 4489 0 0 T 99 * * * * * * * 5276 * 3950 * * * * * 3961 243 * * * 99 0 * * * * * * 4489 0 0 V 100 * * * * * * * 1537 3961 4472 5451 * * * * * * 935 * * 100 0 * * * * * * 4489 0 0 T 101 * * 3630 2913 * * * 5650 3659 4077 5255 3853 * * 5689 4350 1107 * * * 101 96 * 3961 * * * * 4489 0 0 S 102 2144 4479 * 3267 * * * 3864 * 5602 5962 * 3460 * * 3350 2888 2355 * * 102 0 * * * * 0 * 4323 0 1000 L 103 4349 5623 4077 3069 * * * * 4402 3483 4203 4875 * 3786 2595 2325 3482 * * * 103 0 * * * * * * 4489 0 0 D 104 5248 * 192 * * * * * 3961 * * 4888 * * * * * * * * 104 41 5150 * 1585 585 * * 4489 1000 0 V 105 * * * * 5470 * * 2199 * 3704 * * * * * * * 550 * * 105 0 * * * * * * 4489 0 0 V 106 * 4672 * 3275 5820 * * 2650 4498 2723 * * * * * * 4880 1149 * * 106 0 * * * * * * 4489 0 0 Y 107 5215 4888 * * 2589 * 3799 * * 2358 6350 4302 * 5565 4672 4498 3629 5035 5721 2263 107 27 * 5727 * * * * 4489 0 0 A 108 1794 * * * * * * 4493 * 1759 * * * * * 4316 3459 2117 * * 108 0 * * * * * 0 4491 0 1000 L 109 4660 * * * * * * * * 645 1949 * 4870 * * * * 5162 * * 109 0 * * * * * 0 4491 0 1000 K 110 4973 * * * * 5950 * * 1614 * * 4316 * 3956 970 * * * * * 110 0 * * * * * 0 4491 0 1000 R 111 * * * * * 4129 * 5090 4632 * * * * 4973 327 4493 * * * * 111 0 * * * * 0 * 4491 0 1000 Q 112 4491 * * * 5013 * * 3030 * 3963 3360 * * 1081 5145 4183 * 4342 * 4823 112 0 * * * * * * 4472 0 0 G 113 * * * * * 52 * * * * * * * 4811 * * * * * * 113 0 * * * * * * 4406 0 0 R 114 * * * * * * 2912 3865 3974 * * 2952 * 3090 1437 3773 4447 * * * 114 0 * * * * * * 3868 0 0 T 115 * * * * * * * 3647 3677 4534 3506 3461 1713 4736 3761 * 2295 * * * 115 0 * * * * * * 3812 0 0 L 116 3612 * * * * * * 2052 * 1332 4534 * * * * * * 3435 * 2794 116 0 * * * * * * 3812 0 0 Y 117 * * * * * * * 2515 * * * * * * * * * * * 277 117 0 * * * * * * 3279 0 0 G 118 * * * * * 54 * * * * * * * * * 4757 * * * * 118 0 * * * * * * 3279 0 0 F 119 * * * * 417 * * * * * * * * * * * * * * 1993 119 0 * * * * * * 3165 0 0 G 120 1765 * * * * 503 * * * * * * * * * * * * * * 120 0 * * * * * * 1982 0 0 G 121 * * * * * 0 * * * * * * * * * * * * * * 121 0 * * 0 * * * 1119 0 0 //