HHsearch 1.5 NAME c2ly4B_ FAM FILE c2ly4B_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2ly4B_.a3m DATE Sat Nov 3 15:32:39 2012 LENG 47 match states, 47 columns in multiple alignment FILT 1 out of 5 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.0 EVD 0.4679 2.9910 SEQ >ss_dssp CCCSSTTTTTTTSSCSSSCSCCCSSCSTTSSSCHHHHTTTSCCCSCC >sa_dssp EEEEEEDDEECEEECEEEEDEECEECEECEEECCEECEEEEDEDEDE >ss_pred CCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC >ss_conf 96456899998624234356450456666414768999986307898 >Consensus lsqetfsdlwkllpennvlsplpsqamddlmlspddieqwftedpgp >c2ly4B_ LSQETFSDLWKLLPENNVLSPLPSQAMDDLMLSPDDIEQWFTEDPGP # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * * * 0 * * * * * * * * * * 1 0 * * * * * * 1000 0 0 S 2 * * * * * * * * * * * * * * * 0 * * * * 2 0 * * * * * * 1000 0 0 Q 3 * * * * * * * * * * * * * 0 * * * * * * 3 0 * * * * * * 1000 0 0 E 4 * * * 0 * * * * * * * * * * * * * * * * 4 0 * * * * * * 1000 0 0 T 5 * * * * * * * * * * * * * * * * 0 * * * 5 0 * * * * * * 1000 0 0 F 6 * * * * 0 * * * * * * * * * * * * * * * 6 0 * * * * * * 1000 0 0 S 7 * * * * * * * * * * * * * * * 0 * * * * 7 0 * * * * * * 1000 0 0 D 8 * * 0 * * * * * * * * * * * * * * * * * 8 0 * * * * * * 1000 0 0 L 9 * * * * * * * * * 0 * * * * * * * * * * 9 0 * * * * * * 1000 0 0 W 10 * * * * * * * * * * * * * * * * * * 0 * 10 0 * * * * * * 1000 0 0 K 11 * * * * * * * * 0 * * * * * * * * * * * 11 0 * * * * * * 1000 0 0 L 12 * * * * * * * * * 0 * * * * * * * * * * 12 0 * * * * * * 1000 0 0 L 13 * * * * * * * * * 0 * * * * * * * * * * 13 0 * * * * * * 1000 0 0 P 14 * * * * * * * * * * * * 0 * * * * * * * 14 0 * * * * * * 1000 0 0 E 15 * * * 0 * * * * * * * * * * * * * * * * 15 0 * * * * * * 1000 0 0 N 16 * * * * * * * * * * * 0 * * * * * * * * 16 0 * * * * * * 1000 0 0 N 17 * * * * * * * * * * * 0 * * * * * * * * 17 0 * * * * * * 1000 0 0 V 18 * * * * * * * * * * * * * * * * * 0 * * 18 0 * * * * * * 1000 0 0 L 19 * * * * * * * * * 0 * * * * * * * * * * 19 0 * * * * * * 1000 0 0 S 20 * * * * * * * * * * * * * * * 0 * * * * 20 0 * * * * * * 1000 0 0 P 21 * * * * * * * * * * * * 0 * * * * * * * 21 0 * * * * * * 1000 0 0 L 22 * * * * * * * * * 0 * * * * * * * * * * 22 0 * * * * * * 1000 0 0 P 23 * * * * * * * * * * * * 0 * * * * * * * 23 0 * * * * * * 1000 0 0 S 24 * * * * * * * * * * * * * * * 0 * * * * 24 0 * * * * * * 1000 0 0 Q 25 * * * * * * * * * * * * * 0 * * * * * * 25 0 * * * * * * 1000 0 0 A 26 0 * * * * * * * * * * * * * * * * * * * 26 0 * * * * * * 1000 0 0 M 27 * * * * * * * * * * 0 * * * * * * * * * 27 0 * * * * * * 1000 0 0 D 28 * * 0 * * * * * * * * * * * * * * * * * 28 0 * * * * * * 1000 0 0 D 29 * * 0 * * * * * * * * * * * * * * * * * 29 0 * * * * * * 1000 0 0 L 30 * * * * * * * * * 0 * * * * * * * * * * 30 0 * * * * * * 1000 0 0 M 31 * * * * * * * * * * 0 * * * * * * * * * 31 0 * * * * * * 1000 0 0 L 32 * * * * * * * * * 0 * * * * * * * * * * 32 0 * * * * * * 1000 0 0 S 33 * * * * * * * * * * * * * * * 0 * * * * 33 0 * * * * * * 1000 0 0 P 34 * * * * * * * * * * * * 0 * * * * * * * 34 0 * * * * * * 1000 0 0 D 35 * * 0 * * * * * * * * * * * * * * * * * 35 0 * * * * * * 1000 0 0 D 36 * * 0 * * * * * * * * * * * * * * * * * 36 0 * * * * * * 1000 0 0 I 37 * * * * * * * 0 * * * * * * * * * * * * 37 0 * * * * * * 1000 0 0 E 38 * * * 0 * * * * * * * * * * * * * * * * 38 0 * * * * * * 1000 0 0 Q 39 * * * * * * * * * * * * * 0 * * * * * * 39 0 * * * * * * 1000 0 0 W 40 * * * * * * * * * * * * * * * * * * 0 * 40 0 * * * * * * 1000 0 0 F 41 * * * * 0 * * * * * * * * * * * * * * * 41 0 * * * * * * 1000 0 0 T 42 * * * * * * * * * * * * * * * * 0 * * * 42 0 * * * * * * 1000 0 0 E 43 * * * 0 * * * * * * * * * * * * * * * * 43 0 * * * * * * 1000 0 0 D 44 * * 0 * * * * * * * * * * * * * * * * * 44 0 * * * * * * 1000 0 0 P 45 * * * * * * * * * * * * 0 * * * * * * * 45 0 * * * * * * 1000 0 0 G 46 * * * * * 0 * * * * * * * * * * * * * * 46 0 * * * * * * 1000 0 0 P 47 * * * * * * * * * * * * 0 * * * * * * * 47 0 * * 0 * * * 1000 0 0 //