HHsearch 1.5
NAME  c2lxmB_
FAM   
FILE  c2lxmB_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c2lxmB_.a3m 
DATE  Wed Jan  9 15:20:41 2013
LENG  36 match states, 36 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.3 
EVD   0.5381  4.1079 
SEQ
>ss_dssp
CCCCCCHHHHHHHHHHHHHHHHHCSCCHHHHHHHHC
>sa_dssp
EEEEEDEEEDDEEEEDEDDEEEEDEECEEEEEEEEE
>ss_pred
CCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
>ss_conf
987646567787998644566531404689987519
>Consensus
gxpexdxddlxaeldalgdexxxdxdssyldxxxxa
>c2lxmB_
GTPELDEDDLEAELDALGDELLADEDSSYLDEAASA
>UniRef50_Q9VVI9(154-189:226) Charged multivesicular body protein 5 n=52 Tax=Eumetazoa RepID=CHMP5_DROME  E=5e-06 s/c=1.45 id=62% cov=103%
GMPEVDDDDLQAELDALGDEIALDDDTSYLDDVVKA
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
G 1    *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1284	0	0	

T 2    *	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	1000	*	*	*	2
       0	*	*	*	*	*	*	1284	0	0	

P 3    *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1284	0	0	

E 4    *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1284	0	0	

L 5    *	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	1000	*	*	5
       0	*	*	*	*	*	*	1284	0	0	

D 6    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1284	0	0	

E 7    *	*	1000	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1284	0	0	

D 8    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1284	0	0	

D 9    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	9
       0	*	*	*	*	*	*	1284	0	0	

L 10   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1284	0	0	

E 11   *	*	*	1000	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1284	0	0	

A 12   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1284	0	0	

E 13   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1284	0	0	

L 14   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1284	0	0	

D 15   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1284	0	0	

A 16   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1284	0	0	

L 17   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1284	0	0	

G 18   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	18
       0	*	*	*	*	*	*	1284	0	0	

D 19   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1284	0	0	

E 20   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1284	0	0	

L 21   *	*	*	*	*	*	*	1000	*	1000	*	*	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1284	0	0	

L 22   1000	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1284	0	0	

A 23   1000	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1284	0	0	

D 24   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1284	0	0	

E 25   *	*	1000	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1284	0	0	

D 26   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	26
       0	*	*	*	*	*	*	1284	0	0	

S 27   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	1000	*	*	*	27
       0	*	*	*	*	*	*	1284	0	0	

S 28   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	28
       0	*	*	*	*	*	*	1284	0	0	

Y 29   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	29
       0	*	*	*	*	*	*	1284	0	0	

L 30   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	30
       0	*	*	*	*	*	*	1284	0	0	

D 31   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	31
       0	*	*	*	*	*	*	1284	0	0	

E 32   *	*	1000	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	32
       0	*	*	*	*	*	*	1284	0	0	

A 33   1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	33
       0	*	*	*	*	*	*	1284	0	0	

A 34   1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	34
       0	*	*	*	*	*	*	1284	0	0	

S 35   *	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	1000	*	*	*	*	35
       0	*	*	*	*	*	*	1284	0	0	

A 36   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	36
       0	*	*	0	*	*	*	1284	0	0	

//