HHsearch 1.5 NAME c2lwfA_ FAM FILE c2lwfA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2lwfA_.a3m DATE Sat May 25 08:35:27 2013 LENG 119 match states, 119 columns in multiple alignment FILT 14 out of 18 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.0 EVD 0.3979 -1.2106 SEQ >ss_dssp CCSSCCSGGGCEEEESTTGGGSCCSSEEEEEECTTCCEEEEEEESCHHHHHHHHHHHSGGGCSEEEEEECSSCCHHHHHHHHHHHHHHHHHHTCCCCTTT TTSSCTTTSCSCCCCSCCC >sa_dssp DEECADCAEDBDECCCEDCEDBCDCBAABAAABEEDCACBABDCEDABDCACDAAECDDEBCCBACAABBEEEDEECBDEACDDABCCBDEEDDCECEBC DEEEDCBEDCEEEEDEEEE >ss_pred CCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCC CCHHHHHHHCCCCCCCCCC >ss_conf 9632101220731100136745444204898767788778702299999999999842121203898972799868999999999888777508889998 2235778744678565579 >Consensus mxxxxxxLxelxxxPxxexgxlpxxxGVYAIyDxxxxLQyIGySRdvxxSlxxHlxrxPxxCxxvKvxxvxxpxRxxLexxxkxWixExixxxGxvPpGN xxgxxxWxxxxxxxkxxxx >c2lwfA_ MASAVKSLTETELLPITEADSIPSASGVYAVYDKSDELQFVGISRNIAASVSAHLKSVPELCGSVKVGIVEEPDKAVLTQAWKLWIEEHIKVTGKVPPGN KSGNNTFVKVTLEHHHHHH >UniRef50_Q8DIK3(1-108:177) Tll1582 protein n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=Q8DIK3_THEEB E=1e-38 s/c=1.48 id=31% cov=87% MSLPAPTLAELPLHPYIDgsgrvAPDLKGAIGLYAIFDAAGSVQYIGYSRDMRLSLLQHLVRCPQGCSGYKAIAIERPDRPWLETVKQQWLAE----LGT VPLGNDRDRRQW------------ >UniRef50_P73146(1-108:175) Slr1035 protein n=1 Tax=Synechocystis sp. PCC 6803 RepID=P73146_SYNY3 E=1e-19 s/c=0.90 id=39% cov=87% MADSLPNLVDLNFLPfLTEAGEIdpnyEKRIGVYAIFDQHQNLQYVGYSRNLAISLLQHLVRQPEHCHGLKVHIIDRPDRQLLVQIQNHWL------VGQ NPPGNGESQKIWAE---------- >UniRef50_C1FD40(91-181:393) Iron-sulfur cluster scaffold protein, plastid n=2 Tax=Micromonas RepID=C1FD40_9CHLO E=2e-06 s/c=0.58 id=30% cov=67% --------------------------GVFAMYDPSDNMLYAGYAKDAISAVRTYVEKG--LGARVRVAIFanrATATRVNLRAEQDRWIGEWIDSNGGge taIPPGNtAAGAADW------------ >UniRef50_A9SSQ0(114-219:307) Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9SSQ0_PHYPA E=1e-25 s/c=1.10 id=40% cov=79% ------SLSSLEYIPYlTEEGHIadctePGAkASLYAIFDENKTLCFIGISRQVYQSMRLHFARRPLQCYYVKVMHVSKPSRALLEGTRDAWISEN---- GSVPVGNDNG---------------- >UniRef50_B2IU22(66-145:220) Putative uncharacterized protein n=3 Tax=Cyanobacteria RepID=B2IU22_NOSP7 E=2e-20 s/c=1.25 id=30% cov=66% -------------------------AGVYSVLDAERRVQYIGYSRNVLLSLNGHVtQNGQQKCAFVRVQAFKFPKRQDMEDLRDAWIAE----LETTPPG NASESEMW------------ >UniRef50_A8J3E4(103-194:488) Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8J3E4_CHLRE E=4e-18 s/c=1.00 id=31% cov=60% --------------------------AVYAIYDEKQKLQYVGTTTDLRNALRAALGRRPEKTHYYKAAHLPTADTPALQAVRDAWFSE----CGGQPNGN ------------------- >UniRef50_C1FDI3(1-200:215) Glutaredoxin-related protein (Fragment) n=2 Tax=Micromonas RepID=C1FDI3_9CHLO E=2e-44 s/c=0.39 id=42% cov=83% ---------------------IPSGPGVYAVYDANKDLQYIGLSWKVIASINLHMHELPQLCDSVRYAAVPTPSKAALQNAWKQWMSEHInENAGNLPPG NAQGNSLWAERKLSPvKDSFV >UniRef50_A8HN52(44-161:281) Glutaredoxin, CGFS type n=2 Tax=cellular organisms RepID=A8HN52_CHLRE E=2e-40 s/c=1.36 id=39% cov=96% ------TLAETKAVPVMEKGELsqfPGSAGVYAVYDKNGTLQYIGLSRKVSASVATHMQELPDLTGSIKYNIVDDASREGLTAAWKSWVEETVAEAGIIP PGNAPGETKWQSRsvARATKPEIR # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 2064 * * 394 * * * * * * * * * 1 0 * * * * * * 1959 0 0 A 2 1048 * * * * * * * * * * * * * * 954 * * * * 2 0 * * * * * * 1959 0 0 S 3 2064 * 2014 * * * * * * 1851 * * * * * 2083 * * * * 3 0 * * * * * * 1959 0 0 A 4 1074 * * * * * * * * * * * 1851 * * 2014 * * * * 4 0 * * * * * * 1959 0 0 V 5 2206 * * * * * * 2337 * 2406 * * * * * * * 1334 * * 5 0 * * * * * * 2102 0 0 K 6 * * * * * * * * 1334 * * * 729 * * * * * * * 6 0 * * * * * * 2102 0 0 S 7 2928 * * * * * * * * * * 1571 * * * 1994 1831 * * * 7 0 * * * * * * 2611 0 0 L 8 * * * * * * * * * 0 * * * * * * * * * * 8 0 * * * * * * 2611 0 0 T 9 1831 * * * * * * * * * * 2928 * * * 2869 2135 2165 * * 9 0 * * * * * * 2611 0 0 E 10 * * 3091 644 * * * * * * * 3243 * * * 2869 * * * * 10 0 * * * * * * 2611 0 0 T 11 * * * * * * * * * 690 * * * * * * 1395 * * * 11 0 * * * * * * 2611 0 0 E 12 * * * 1089 * * * * 2712 * * 3091 1944 * * * * * * * 12 0 * * * * * * 2611 0 0 L 13 2712 * * * 3091 * * * * 1037 * * * * * * * * * 2044 13 174 3139 * 1000 1000 * * 2611 1000 0 L 14 * * * * * * 2961 2044 * 2111 * * * 2928 * * * 1910 * * 14 0 * * * * * * 2611 0 0 P 15 * * * * * * * * * * * * 0 * * * * * * * 15 180 3091 * 0 * * * 2611 1000 0 I 16 * * * * 2928 * * 3131 * 2115 * * * * * * * 2712 * 1431 16 212 2869 * 0 * * * 2611 1000 0 T 17 * * * * * * * 2095 * * 2712 * * * * * 1053 2928 * * 17 0 * * * * * * 2611 0 0 E 18 3139 * 1452 940 * * * * * * * * * * * * * * * * 18 400 2047 * 2001 415 * * 2611 1564 0 A 19 1025 * * 2044 * * * * 2712 * * * * * * 3139 * * * * 19 390 2077 * 0 * * * 2611 1394 0 D 20 * * 3131 * * 635 * * * * * * 2961 3139 * * * * * * 20 0 * * * * * * 2611 0 0 S 21 * * 3137 2104 * * 2880 * 2274 * * * * 2244 * 3324 * * * * 21 0 * * * * * * 2700 0 0 I 22 * * * * * * * 1086 * 919 * * * * * * * * * * 22 492 1792 * 1991 418 * * 2847 1931 0 P 23 * * * 3491 * * 3579 * 3356 * * * 455 * * * * * * * 23 112 3740 * 2000 415 * * 2847 1000 0 S 24 3335 * * 3740 * 1749 * * 2534 3297 * * * * * 1977 * * * * 24 0 * * * * * * 2847 0 0 A 25 1384 * * 3714 * 3335 * * 2657 * * * * * 3491 3400 3335 * * * 25 334 2273 * 1348 720 * * 2847 1538 0 S 26 1427 * * * * * * 1328 * * * * 3486 * * 2830 * * * * 26 0 * * * * * * 2980 0 0 G 27 3492 * * * * 259 * * * * * * * * * 3733 * * * * 27 0 * * * * * * 3286 0 0 V 28 * * * * * * * 3670 * 2848 * * * * * * * 354 * * 28 0 * * * * * * 3286 0 0 Y 29 * * * * 3096 * * * * * * * * * * * * * * 179 29 0 * * * * * * 3286 0 0 A 30 134 * * * * * * * * * * * * * * 3500 * * * * 30 0 * * * * * * 3286 0 0 V 31 * * * * * * * 1053 * * 3096 * * * * * * 1319 * * 31 0 * * * * * * 3286 0 0 Y 32 * * * * 1668 * * * * 3500 * * * * * * * * * 744 32 0 * * * * * * 3286 0 0 D 33 * * 101 * * * * * * * * 3888 * * * * * * * * 33 0 * * * * * * 3286 0 0 K 34 2198 * * 2095 * * * * 2034 * * * 3096 3208 3670 * * * * * 34 0 * * * * * * 3286 0 0 S 35 3972 * 3670 2853 * * 4101 * 3492 * * 1597 * * 3835 2542 * * * * 35 0 * * * * * * 3286 0 0 D 36 * * 1757 * * 2927 * * 1951 * * * * 2765 2582 * * * * * 36 0 * * * * * * 3286 0 0 E 37 3835 * 3059 4192 * * 3888 * 3492 * * 2513 * 3670 3500 3972 2374 * * * 37 0 * * * * * * 3286 0 0 L 38 * * * * * * * 3888 * 592 3096 * * * * * * 2717 * * 38 0 * * * * * * 3286 0 0 Q 39 * 3733 * * * * * * * 3096 * * * 308 * * * * * * 39 0 * * * * * * 3286 0 0 F 40 * * * * 1730 * * * * 3670 * * * * * * * * * 690 40 0 * * * * * * 3286 0 0 V 41 3096 * * * * * * 833 * * * * * * * * * 1636 * * 41 0 * * * * * * 3286 0 0 G 42 * * * * * 118 3670 * * * * * * * * * * * * * 42 0 * * * * * * 3286 0 0 I 43 * * * * * * * 2442 * 2296 * * * * * * 3492 * * 934 43 0 * * * * * * 3286 0 0 S 44 3096 * * * * * * * * * * * * * * 332 3492 * * * 44 0 * * * * * * 3286 0 0 R 45 * * * * * * * * 3096 * * * * * 457 * 3492 * 3924 * 45 0 * * * * * * 3286 0 0 N 46 * * 1181 * * * * * 2296 * * 1837 * 3733 * * * * * * 46 0 * * * * * * 3286 0 0 I 47 3096 * * * * * * 2503 * 2765 3972 * * * * * * 1012 * * 47 0 * * * * * * 3286 0 0 A 48 2581 * * * * * * 2451 * 3500 * 3835 * * 2712 2773 * * * 2376 48 0 * * * * * * 3286 0 0 A 49 1678 * * * * * * 4101 * 1522 * 3492 * 3733 * 3096 * * * * 49 0 * * * * * * 3286 0 0 S 50 2280 * * * * * * * * * * * * * * 332 * * * * 50 0 * * * * * * 3286 0 0 V 51 * * * * * * * 3924 * 1014 3733 * * * * * * 1460 * * 51 0 * * * * * * 3286 0 0 S 52 3884 * * * 4207 * * * 2861 3035 * 2696 * 3670 1595 4192 * * * * 52 0 * * * * * * 3286 0 0 A 53 2800 * * * * 3500 * * * 2826 * * * 1653 * 4207 2437 3835 * * 53 0 * * * * * * 3286 0 0 H 54 3492 * * * * * 332 * * * * * * * * * * * * 3096 54 0 * * * * * * 3286 0 0 L 55 3835 * * * 3733 * * * * 955 2904 * * * * * * 2284 * * 55 134 3500 * 0 * * * 3286 1000 0 K 56 3733 * * 3096 3835 3492 3924 * 3200 3670 * * * 2679 * * * 2062 * * 56 0 * * * * * * 3286 0 0 S 57 * * * 2296 * * * * 3096 * * 3500 * * 1053 3200 * * * * 57 0 * * * * * * 3286 0 0 V 58 * 3972 * * * 2284 * * * 2904 3835 * * 1975 2608 * * 3200 * * 58 179 * 3096 * * * * 3286 0 0 P 59 * * * * * * * * * 4177 * * 244 3315 * * * * * * 59 0 * * * * * 0 3059 0 1000 E 60 * * 2611 1750 * * * * * 3587 * 3757 * 1389 * * * * * * 60 0 * * * * 0 * 3059 0 1000 L 61 * * * * * 3972 3208 * 2496 1476 * 3888 * 3733 3670 * * * * 3835 61 0 * * * * * * 3286 0 0 C 62 * 461 * * * 3096 * * * * * * * * * * 2675 * * * 62 0 * * * * * * 3286 0 0 G 63 2284 4207 3924 * * 3030 2765 * * * * * * * * 3972 * * * 1551 63 0 * * * * * * 3286 0 0 S 64 3835 * * * 3500 3035 * * * * * * * * 3096 2044 * * 2351 2608 64 0 * * * * * * 3286 0 0 V 65 * * * * 3670 * * 3884 * 2991 * * * * * * * 798 * 2712 65 0 * * * * * * 3286 0 0 K 66 * * * * * * * * 621 * * * * * 1515 * * * * * 66 0 * * * * * * 3286 0 0 V 67 2113 3835 * * 3888 * * * * * * * * * * * * 1007 * 2904 67 0 * * * * * * 3286 0 0 G 68 1880 * * 3888 * 3200 4101 3972 * * 2783 3884 * 2205 * * * * * * 68 0 * * * * * * 3286 0 0 I 69 1796 * * * * * 2608 1748 * * * * * * 3670 * 3089 4207 * * 69 0 * * * * * * 3286 0 0 V 70 * 3670 * * 2284 * * 2062 * 2654 * * * * * * * 1655 * * 70 179 3096 * 1585 585 * * 3286 1000 0 E 71 3096 * 1616 2570 * * * * 3500 * * * 2153 * * 3733 * * * * 71 0 * * * * * * 3286 0 0 E 72 * * 2859 3200 3500 * * * 3733 * * 3888 * * 1997 * 1880 * * * 72 0 * * * * * * 3286 0 0 P 73 1541 * * * * * * * * * * * 607 * * * * * * * 73 0 * * * * * * 3286 0 0 D 74 * * 1328 * * * * * 3500 * * 3888 * * * 1605 3096 * * * 74 0 * * * * * * 3286 0 0 K 75 * * * * * * * * 2391 * * * * * 473 * 3492 * * * 75 0 * * * * * * 3286 0 0 A 76 1911 * * 3884 * * * * * * * * 2712 2150 * 3888 3264 3096 * * 76 0 * * * * * * 3286 0 0 V 77 2692 * 2658 * * 3884 * 3888 * 2906 * 3096 * 3670 * * 4207 3256 3972 * 77 0 * * * * * * 3286 0 0 L 78 * * * * * * * * * 134 3500 * * * * * * * * * 78 0 * * * * * * 3286 0 0 T 79 * * * 1240 * * * * * * * * * 2153 3096 * 2502 4101 * * 79 0 * * * * * * 3286 0 0 Q 80 1244 * 3500 * * 3733 * * * * * 3110 * 2091 * * 3972 * * * 80 0 * * * * * * 3286 0 0 A 81 1678 * * 3096 * * * 2508 * 2582 * * * * * * 3733 2712 * * 81 0 * * * * * * 3286 0 0 W 82 * * * 4323 * * * * 2930 * * * * 1978 1986 * * * 1678 * 82 0 * * * * * * 3286 0 0 K 83 * * 1437 * * * * * 1218 * * 4101 * 2813 * * * * * * 83 0 * * * * * * 3286 0 0 L 84 1392 * 3888 * * * 4101 * * 4192 * * * 2948 3096 3037 3835 * * * 84 0 * * * * * * 3286 0 0 W 85 * * * * * * * * * * * * * * * * * * 0 * 85 0 * * * * * * 3286 0 0 I 86 * * * * 3492 * * 980 * 2318 3924 * * * * * * 2859 * * 86 87 * 4101 * * * * 3286 0 0 E 87 1731 * * 2415 * 3036 * * * * 3775 * * * * 1660 * * * * 87 0 * * * * * 0 3250 0 1000 E 88 * * * 109 * * * * * * * * * 3787 * * * * * * 88 431 * 1952 * * * 0 3250 0 1000 H 89 * * * * * * 1505 * * * * 2334 * 3126 * * 3440 * 2758 3400 89 357 * 2191 * * * 0 2913 0 2134 I 90 * * * * * * * 849 * 2464 * * * * * * * 1925 * * 90 203 2928 * 0 * * 0 2553 1000 2362 K 91 2957 * 2376 2928 * * * * 2112 * * * * 2464 * * 2893 * * * 91 288 * 2464 * * * 0 2553 0 2362 V 92 * * * 2651 * * * * * * * 2656 * * * 2094 1722 2789 * * 92 0 * * * * 779 1261 2248 0 2408 T 93 1852 3239 * * * * * * * 2145 * 2870 * * * * 2656 3387 * * 93 0 * * * * 631 1497 3071 0 1714 G 94 * * * 3301 * 154 * * * * * * * * * * * * * * 94 0 * * * * * 0 3155 0 1000 K 95 * * * * * 1736 * 3633 2924 * * 3739 * 3764 * 3520 1990 * * * 95 195 2985 * 2000 415 0 * 3155 1000 1000 V 96 * * * * * * * 2387 * 2802 * 3921 * 3494 * * 2725 1476 * * 96 0 * * * * * * 3256 0 0 P 97 * * * * * * * * * * * * 0 * * * * * * * 97 0 * * * * * * 3256 0 0 P 98 * * * * * * * * * 3770 * 3494 517 * * * * 2844 * * 98 0 * * * * * * 3256 0 0 G 99 * * * * * 0 * * * * * * * * * * * * * * 99 0 * * * * * * 3256 0 0 N 100 * * * * * * * * * * * 0 * * * * * * * * 100 203 2927 * 0 * * * 3256 1000 0 K 101 1093 * 2542 3958 * 2147 * * 3846 * * * * * * * * * * * 101 0 * * * * * * 3190 0 0 S 102 2958 * 3521 2850 * * * * * * * 3525 2620 3652 3560 2110 * * * * 102 0 * * * * * * 3190 0 0 G 103 * * 3560 3355 * 757 * * * * * * * 2730 * 3736 * * * * 103 0 * * * * * * 3190 0 0 N 104 2120 * * 3542 * * * * 3730 * * 1614 * 3614 3404 3240 * * * * 104 0 * * * * * * 3080 0 0 N 105 1732 * * 2464 * * * * 2531 * * 3723 * * 3404 3495 3542 * * * 105 0 * * * * * * 3080 0 0 T 106 * * 2120 * * * * 2671 3542 2474 3240 * * 3404 * * 2769 * * * 106 0 * * * * * * 3080 0 0 F 107 * * * * 2582 * * * * * * * * * * * * * 264 * 107 0 * * * * * * 3080 0 0 V 108 1718 * * * * * * 3051 * * * * * 2755 * 2763 2672 3023 * * 108 230 2763 * 0 * * * 2429 1000 0 K 109 * * * 1718 * * * * 2037 * * * * 2672 2763 2755 * * * * 109 0 * * * * * * 2429 0 0 V 110 * * * * * * * * * * * * * 2433 689 * * 2361 * * 110 334 2274 * 1000 1000 * * 2052 1000 0 T 111 1281 * * * * * * * 2261 * * * 2433 * * * 2361 * * * 111 0 * * * * * * 2052 0 0 L 112 * * * * * * * * * 1310 * * 2433 * 1281 * * * * * 112 0 * * * * * * 2052 0 0 E 113 2274 * * 2361 * * * * 2433 * * * 2288 * * 2261 * * * * 113 0 * * * * * * 2052 0 0 H 114 * * * * * * 2361 * 2433 * * * 2261 * * 2288 2274 * * * 114 337 2261 * 0 * * * 2052 1000 0 H 115 * * * * * * 2361 * 312 * * * * * * * * * * * 115 0 * * * * * * 2052 0 0 H 116 1359 * 2261 * * * 2361 * * * * * 2274 * * * * * * * 116 0 * * * * * * 2052 0 0 H 117 * 2288 2433 2274 * * 2361 * * * * * * * * 2261 * * * * 117 0 * * * * * * 2052 0 0 H 118 * * * * 2261 * 2361 2274 * 1359 * * * * * * * * * * 118 0 * * * * * * 2052 0 0 H 119 * * * * * * 2361 * * * * * * * 745 * * 2261 * * 119 0 * * 0 * * * 2052 0 0 //