HHsearch 1.5 NAME c2lw3A_ FAM FILE c2lw3A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2lw3A_.a3m DATE Sat Mar 16 08:18:46 2013 LENG 90 match states, 90 columns in multiple alignment FILT 68 out of 72 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.3 EVD 0.4298 -0.2655 SEQ >ss_dssp CEEBCBCCCCTTCCCCCBCCCTTSCCCCCCSCSSCCBCCEECSSSCCCCCCBCCSSCSCCCCCCBBTTBCCCCCCCCCSCTTSSSCCSCC >sa_dssp EDACACBDDCEDCECDBDBECEEEEDCEDEECEDCEDDEBECEEEECDBEBEBCADADDBBBDBDBDEEEECDEEDEDEEBDDEEEEEEE >ss_pred CEEEEEEECCCCCEEEEEEECCCCCEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCEEEEEEEECCEEEEEECCCCCCCEEEEEEEEC >ss_conf 949999983999839999981898655421678870799998598515899999179817999999999966504677687699999719 >Consensus xxVtYeVxGxxgxxxxItYxDxxgxxxxxxxvxLPWsxtvtxxxxxxxxxvxaqxxgxxixCrItVdGxvxxextaxgxxaxxxCxvksa >c2lw3A_ MHLTYEIFGPPGTVADISYFDVNSEPQRVDGAVLPWSLHITTNDAAVMGNIVAQGNSDSIGCRITVDGKVRAERVSNEVNAYTYCLVKSA >UniRef50_UPI0001B57F98(76-157:163) hypothetical protein StAA4_01858 n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B57F98 E=2e-10 s/c=0.82 id=28% cov=87% -QITYELAGS--GTATVVYDDNGlGLVHQELSVPLPWSKTLTWPKTAVAPTvqLMGQSSGP-VECRISVNGVLaRSAKAADGEVA--------- >UniRef50_B5H573(133-217:226) Predicted protein n=2 Tax=Streptomyces RepID=B5H573_STRPR E=0.0003 s/c=0.54 id=20% cov=91% --VTYEVVGE--GPVEISYLArsEDGTATVVRDAELPWKKTVQVPLGKPPTVAIVLGEkGGQAACTLAIRGEHVQRATASGEFGRATC----- >UniRef50_B1MEW3(34-117:119) Putative uncharacterized protein n=1 Tax=Mycobacterium abscessus ATCC 19977 RepID=B1MEW3_MYCA9 E=5e-12 s/c=0.86 id=27% cov=92% --VLYVISSDRPITA-ITWRDSLGHMRDqpVDGAQRTWTWTFTSDVANPPYFVSAQSAGATVTCRLIVNGKVKVEDTTTGHASTATC----- >UniRef50_B8ZQH3(110-194:195) Putative membrane protein n=2 Tax=Mycobacterium leprae RepID=B8ZQH3_MYCLB E=6e-09 s/c=0.73 id=22% cov=89% --VVYNVTGmkELLDLVTVVYTDARGYPKTEFNVVLPWTKAVVLNLGVKTQSVVATSFHSQLHCSIVnAEGQPVVASTNNAVIA--------- >UniRef50_B1MGT2(142-213:226) Putative uncharacterized protein n=1 Tax=Mycobacterium abscessus ATCC 19977 RepID=B1MGT2_MYCA9 E=3e-07 s/c=0.78 id=28% cov=80% --VTYSV-GGSGSQVNVAYM-TDTEYVRVANISQPWAVTVTRTQRDKPLIMnVTMVGEGTISCSITVDGVTVTEST--------------- >UniRef50_UPI0001B4F2CD(50-126:139) hypothetical protein ShygA5_03305 n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4F2CD E=7e-09 s/c=0.80 id=29% cov=86% ---VFKVWGSAPAGADITY---GSDSDNLDGSGLPMTKTLKVQDGALYYHISAQlQGGGDIRCSVTIDGQTK---TGHARGSYNIC----- >UniRef50_B1W4L5(68-154:361) Putative uncharacterized protein n=2 Tax=Streptomyces RepID=B1W4L5_STRGG E=4e-09 s/c=0.72 id=19% cov=81% VEVTYIATGDHPS-VNLSVGNANDSHESRRIVTLPYRETVEmAPGADFYLDVTSREDqeGGTLTCTVLVDGKVVQQ----------------- >UniRef50_D0LD84(71-157:162) Putative uncharacterized protein n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LD84_GORB4 E=3e-11 s/c=0.80 id=26% cov=94% VDVTYEITGD-GPTGSATYTTGNLETAQDTDITIPWKKEVQITGLGKSVSLFASNGlnsSGSITCTIRQGDKVISTNTSSGPGASASC----- >UniRef50_A0R1A0(82-164:173) Putative uncharacterized protein n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R1A0_MYCS2 E=4e-07 s/c=0.67 id=25% cov=84% --LTMEVTGT-GSSALVAYSDGLAPPGDYAEVALPWTYEGTgVPETAFYLMVKPTAAGDTVTCKVTFQGTILADQSTTD------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 1551 * * * * * * 602 * * 1 0 * * * * * * 2218 0 0 H 2 * * 4090 3783 * * 2093 * * * * 2789 * 1030 * * * * * * 2 0 * * * * * * 4318 0 0 L 3 * * * * * * * 2722 * 3889 5706 * * * * * * 392 * * 3 0 * * * * * * 5420 0 0 T 4 5818 * * 5736 * * 6102 6717 5029 3249 * * * 6006 3366 * 1186 1991 * * 4 0 * * * * * * 5464 0 0 Y 5 * * * * 4667 * * * * 4153 5237 * * * * * * * * 188 5 0 * * * * * * 5501 0 0 E 6 * * 5188 761 * * * 5281 4667 5071 6513 5662 * 4065 3644 4769 5417 4519 * 6210 6 0 * * * * * * 5501 0 0 I 7 4087 * * * * * * 2843 * 3507 * * * * * * * 486 * * 7 50 * 4876 * * * * 5501 0 0 F 8 5306 * 4974 5879 2560 5603 * 5764 * 6219 * 4817 * * * 3318 1460 4351 2918 5426 8 45 5949 6131 1000 1000 0 * 5460 1000 1633 G 9 4113 * * * * 161 * 5598 * * * * * * * 5199 * * * * 9 145 4741 4097 1000 1000 0 * 5500 1673 1000 P 10 4590 * 2810 3071 * 4759 * * 5969 * * 3576 1955 * * 2916 2896 4821 * * 10 398 4817 2283 1000 1000 943 1060 5475 1431 2363 P 11 1667 * 4360 * * 4133 4992 * 5360 4554 * * 2160 * 3728 3591 5775 * * 3634 11 73 * 4349 * * 495 1783 5297 0 3988 G 12 4463 * * * * 667 * * 3674 5594 * * 3074 3735 * * 4974 * * * 12 123 3825 6514 1000 1000 344 2237 5430 2396 2526 T 13 4638 * 2599 4775 * 2859 5801 5192 * * * 5836 4087 6149 5137 2082 2463 4690 * * 13 155 5427 3673 1000 1000 0 * 5496 1000 1600 V 14 2666 * * * 6042 4065 * 4129 4635 3888 * * 3788 5724 * 4569 2081 2263 6182 6560 14 88 5987 4533 1000 1000 0 * 5392 1000 2453 A 15 1267 * 5618 4833 * 2731 * 3953 * 5007 4990 5809 * * * * * 2098 * * 15 61 6155 5178 0 * 0 * 5462 1000 1686 D 16 * * 2845 3125 5479 * * * 4597 5210 5858 2761 * 5451 4911 3354 1935 5099 * 4442 16 0 * * * * 0 * 5441 0 1000 I 17 3939 * * * 5391 * * 1080 * 3900 * * * * * 4899 * 1568 * * 17 0 * * * * * * 5501 0 0 S 18 4258 * 6407 * * 5465 * 5397 * 5683 * 2855 * 5680 5856 2085 1418 3753 * 6522 18 0 * * * * * * 5519 0 0 Y 19 * * * * 3737 * * * * * * * * * * * * 5294 4204 242 19 26 * 5801 * * * * 5519 0 0 F 20 6254 * 4614 5840 4414 3319 4781 * * 2244 3517 5455 * 4875 4121 4488 2825 3620 5521 4520 20 88 5207 4964 883 1127 * 0 5504 1545 1000 D 21 4123 * 546 4367 * 5623 * * * * * 4343 * 5364 * 5174 4249 4824 * * 21 53 4790 * 704 1372 610 1536 5471 1629 2165 V 22 2004 * 4013 3073 * 2302 6369 5096 4134 5213 * 6423 5002 * * 4569 3484 4734 * 5064 22 0 * * * * 0 * 5504 0 1000 N 23 4997 * 2033 5099 * 2840 6407 * 4928 3937 6235 2453 * * 4327 2812 4646 * * 5824 23 52 4825 * 0 * * * 5519 1553 0 S 24 2546 * 5294 * * 932 * * * 4961 * 5158 * * * 2723 4277 5968 * * 24 55 * 4752 * * * * 5519 0 0 E 25 3182 * 4063 2914 5690 6165 3797 6649 * 3947 6204 3650 5187 2606 3877 3747 4225 5931 * 5644 25 65 5610 5411 2322 322 0 * 5496 1000 1664 P 26 4862 * 5826 * 5665 * 5283 4896 * 2538 5239 6040 1452 * 4551 3611 3832 3686 * 5867 26 21 * 6137 * * 0 * 5511 0 1169 Q 27 4776 * 5779 3631 * 4115 2536 * 4322 5062 * 5080 * 1951 2941 5842 4674 3653 * * 27 31 * 5548 * * 0 * 5520 0 1000 R 28 5040 * 3494 4755 6071 5449 * 5050 6370 6332 5911 4143 * 1952 2544 4120 2570 5482 * * 28 39 5237 * 1000 1000 * 0 5491 1000 1000 V 29 2965 * 3134 2394 * * * 4714 * 3597 * * 5663 4945 5263 * 6173 1606 * 5236 29 68 * 4445 * * * 0 5491 0 1000 D 30 3067 * 2322 5075 3046 4799 5637 6402 * 3930 5399 3649 * 4051 4061 3808 4287 4315 * * 30 23 * 5976 * * 0 * 5477 0 2177 G 31 4364 * 3367 4667 4300 2541 * 4502 * 5104 * 1570 4507 6171 * 3921 6396 4416 * * 31 27 * 5765 * * 0 * 5515 0 1000 A 32 2379 * * * * 6185 * 3792 5565 * * * 4008 6232 * 4057 2666 1295 * * 32 0 * * * * 0 * 5496 0 1000 V 33 3270 * 5680 4689 * 3934 * * 4450 * 5562 6511 2457 4078 5141 3137 2009 4523 * 5681 33 0 * * * * * * 5519 0 0 L 34 4350 * * * * * * 4798 * 330 * * * 5883 5259 5667 4871 5484 * * 34 0 * * * * * * 5519 0 0 P 35 * * * * * 4794 * * * * * * 123 * * * 4455 * * * 35 0 * * * * * * 5519 0 0 W 36 * * * * 6190 * * * * * 4685 * * * * * * * 145 4535 36 0 * * * * * * 5519 0 0 S 37 5049 * * 4622 * 5465 6243 * 3063 * * * * 4950 3015 1467 1966 * * * 37 20 * 6197 * * * * 5519 0 0 L 38 4551 * * 4169 4959 * 3977 6382 1246 3751 4544 * * * 4567 6495 5294 3434 5251 4109 38 0 * * * * 0 * 5509 0 1000 H 39 4854 * 4266 1862 * * 6810 6231 * 6580 5705 * * 4318 * 3789 1186 5343 * * 39 0 * * * * * * 5519 0 0 I 40 * * * 3905 2779 5246 * 2600 * 2392 6580 * * * * * * 1339 * * 40 0 * * * * * * 5519 0 0 T 41 5091 * * 3653 6197 * 4923 6379 3802 * * * * 4287 4416 3236 1199 3046 * * 41 77 4270 * 0 * * * 5519 1641 0 T 42 2706 * * * * 4628 * 5925 * 2980 * * 4930 * 5076 4300 1734 2532 3711 * 42 26 * 5824 * * * * 5519 0 0 N 43 * * 3306 5227 4491 6190 * 5673 3369 * 6260 3138 2644 5779 4765 4004 1916 5128 * * 43 26 * 5832 * * 0 * 5509 0 1000 D 44 3408 * 2946 4162 6183 2144 * 4977 3948 2769 5533 * 4498 4843 6512 4943 5926 5222 * 4340 44 98 3928 * 1444 661 0 * 5509 2153 1000 A 45 3234 * 3949 5929 5115 2081 * * 5091 3968 * 5683 2130 5681 4778 5140 3036 * * * 45 21 * 6092 * * * * 5519 0 0 A 46 2083 * 3779 4583 4406 3403 * 6223 5477 5457 * 5244 4669 4652 5979 2410 4187 3562 * * 46 19 6272 * 1585 585 * 0 5509 1000 1000 V 47 4442 * 4324 4752 3375 * * 3856 3588 3264 4393 * 3909 5694 4202 5825 4528 2026 * 5655 47 24 5941 * 0 * 0 * 5509 1000 1000 M 48 4875 * * * 3090 2907 * 5610 * 5506 4679 5465 3029 6190 4911 3339 3387 2848 * 3206 48 48 6380 5575 0 * * * 5519 1000 0 G 49 1953 * * 5698 5756 3173 * * 4618 2851 5677 5916 4368 4639 * 4316 4742 2877 * 3935 49 60 6170 5204 0 * 0 * 5522 1000 1081 N 50 4923 * 3927 6060 5239 4977 5782 3907 * 4429 5229 2640 5653 4297 * 2083 3135 4573 * 4403 50 17 6414 * 1000 1000 0 * 5511 1000 1169 I 51 5502 * * * * 5465 * 2547 * 1662 4282 * * * * * 4809 1391 * * 51 25 5883 * 0 * * * 5519 1000 0 V 52 4683 * * 5681 5925 * 5066 4881 5246 6183 3877 * * 6286 6235 2250 2680 1641 5824 5465 52 0 * * * * * * 5519 0 0 A 53 696 * * * * 5001 * 4512 * 4955 * 5465 5246 * * 4474 3994 3075 * * 53 54 5856 5683 1585 585 * * 5519 1000 0 Q 54 5907 * 4721 5572 * 5059 * 3521 * 4906 4681 * 5618 1221 4784 4219 2644 4817 * * 54 151 3331 * 529 1704 0 * 5506 2676 1000 G 55 2815 * * 5294 * 1590 * * * * 5578 3357 5998 5801 * 2150 * 3421 5091 * 55 72 4361 * 1050 952 * * 5519 2156 0 N 56 3596 * 2064 3603 4928 2855 * 5055 * 5705 * 3686 4426 5176 5681 3305 4320 5436 * 5066 56 146 3375 * 747 1307 * * 5519 2802 0 S 57 4470 * * 4544 * 787 5678 * * * * 6573 5858 * * 2352 4303 5682 * 5705 57 64 5064 6245 1000 1000 * * 5519 1612 0 D 58 3819 * 2671 5801 * 1260 4490 * * * * 6757 3608 6176 6361 2515 * * * * 58 152 5062 3830 2000 415 0 * 5519 1000 1000 S 59 4551 * 3150 3274 4601 5976 5017 * * 6188 * 4476 5770 3178 3656 3250 2029 6665 5226 * 59 0 * * * * 0 * 5470 0 1914 I 60 4132 * * * * * * 1587 * 2354 5852 * * * * * 6237 1381 * * 60 18 * 6309 * * * * 5519 0 0 G 61 4048 * * 5366 * 2155 5671 * * * * 3962 * 5575 4636 2950 1457 * * 4260 61 0 * * * * 0 * 5522 0 1000 C 62 5066 44 * * * * * * * * * * * * * * * * * * 62 0 * * * * * * 5519 0 0 R 63 * * * * * * * * 2866 * * * * 3593 1165 2331 2885 * * * 63 0 * * * * * * 5519 0 0 I 64 * * * * 5344 * * 563 * 3957 * * * * * * * 2095 * * 64 28 5682 * 0 * * * 5519 1000 0 T 65 5505 * * * 5867 * * 3633 * 2234 6099 * * * 4575 4039 1202 3540 * 5066 65 29 5642 * 0 * * * 5519 1000 0 V 66 4691 * * * 5235 * * 3154 * 6377 * 5536 * 4993 * 4575 * 523 * 5681 66 0 * * * * * * 5512 0 0 D 67 5980 * 874 5555 * 4085 * * 5681 * * 1897 * 5235 5488 * 5536 * * * 67 37 5313 * 1985 420 * * 5512 1082 0 G 68 * * 3650 5451 * 156 * * * * * * * * * * * * * * 68 0 * * * * * * 5512 0 0 K 69 5129 * 5516 2408 * * 6250 5333 2283 4997 * 4321 * 2404 6297 5160 4287 2684 * * 69 31 5561 * 1000 1000 * * 5481 1000 0 V 70 * * * 4248 * 5926 5300 4352 * 5288 * * 4709 4903 5710 * 2976 706 * * 70 39 5211 * 0 * * * 5470 1083 0 R 71 4865 * 5846 5970 * * * 4161 2340 3583 5479 5314 5723 * 2186 * 7750 1716 * * 71 28 * 5700 * * * * 5397 0 0 A 72 3519 * 1659 3904 * * * 5693 3290 * * * * 4226 4670 2684 3973 3779 5451 * 72 0 * * * * * 0 5379 0 1000 E 73 3437 * 4507 915 * 5083 * 5837 * * * * * 2988 5277 4475 3481 * * * 73 26 5810 * 2000 415 * 0 5379 1000 1000 R 74 2681 * 3704 * * * 5817 * 3152 * * 3417 * 2602 1959 3453 * 5044 * * 74 49 * 4916 * * 0 * 5249 0 1000 V 75 4968 * * 5898 * 5035 * 6057 5672 * * 5063 4727 * * 2097 1142 3072 * 6309 75 0 * * * * * 0 5217 0 1000 S 76 1188 * 5566 6207 5966 3635 * * * * * 3736 4338 5984 * 2906 3498 3886 * * 76 0 * * * * * 0 5182 0 1000 N 77 3336 * 3449 5397 * * 4473 * 5202 * * 2654 * 5090 * 2077 2026 4554 * * 77 63 4539 * 0 * 0 * 5182 1183 1000 E 78 2488 * 4392 4765 * 890 4792 5835 * * * 5098 * * 4896 3950 5904 * * * 78 157 5672 3587 2585 263 * * 5235 1000 0 V 79 3030 * * 2441 * * 3535 6038 4991 * * 5507 3581 5117 3812 5306 3958 2160 * 4589 79 0 * * * * * 0 4939 0 2239 N 80 4762 * 4861 * 2691 2603 4101 4847 4849 * * 2405 3612 4527 4249 5732 5369 4793 5248 6711 80 0 * * * * 0 * 4939 0 2239 A 81 889 * * 5463 * 2675 * * * * * * 3072 * 4260 3190 * * * * 81 0 * * * * * * 5055 0 0 Y 82 4451 * 5623 * 3984 5347 4315 4398 * 4595 * * * 2253 3634 2443 3652 * * 2705 82 0 * * * * * * 5003 0 0 T 83 1620 * * * * 4964 * 5418 * 5528 6703 5249 * * * * 1489 2283 * * 83 0 * * * * * * 5003 0 0 Y 84 5699 * * * 3058 * 5665 4135 * 4865 * * * * * 1766 2721 2884 5347 2796 84 0 * * * * * * 5003 0 0 C 85 * 0 * * * * * * * * * * * * * * * * * * 85 0 * * * * * * 5003 0 0 L 86 * * * * * * * 2614 2991 1320 5091 4341 * 2916 4670 * 4059 * * * 86 0 * * * * * * 4033 0 0 V 87 4557 * 2263 * * * * * * * 4682 * * * * * * 494 * * 87 0 * * * * * * 3664 0 0 K 88 * * * * * * * * 461 4231 * * * 4100 * 3330 3999 * * * 88 0 * * * * * * 3513 0 0 S 89 2557 * * * * * * * * * * * * * * 496 * 3049 * * 89 0 * * * * * * 3513 0 0 A 90 0 * * * * * * * * * * * * * * * * * * * 90 0 * * 0 * * * 3261 0 0 //