HHsearch 1.5 NAME c2lv2A_ FAM FILE c2lv2A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2lv2A_.a3m DATE Sat Oct 20 16:15:17 2012 LENG 85 match states, 85 columns in multiple alignment FILT 102 out of 12493 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.4 EVD 0.4879 -0.1810 SEQ >ss_dssp CCCCCCCCCCCCCCCCCSCCSSCCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTCCC >sa_dssp EDEEEEEEEEEEEEEEEEEEEEEEDDEECDAEDCEDDBEEDDCCDECAEEECDEEBCDAECCEDCCEDDDCDDECCEEECEEDEE >ss_pred CCCHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEECCHHHCEEEEEEECCCCCEEEECCCEEECCHHHHHHHHHHHCCCCCC >ss_conf 9611120035888877774576888856987757886657856704226545994448821883531537877536553788999 >Consensus xxhhxxxxxxxxxxxxxxxxxxxxxxxxxxCxxCxkxFxxxxxLxxHxxxhxxxxxyxCxxCxxxFxxxxxLxxHxxxxHxxexr >c2lv2A_ MGHHHHHHSHMGDGEGAGVLGLSASAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSENR >UniRef50_Q9N360(324-412:662) Putative uncharacterized protein n=2 Tax=Caenorhabditis RepID=Q9N360_CAEEL E=0.001 s/c=0.50 id=23% cov=99% --HLTQKHSVNPDSTTADILPVAGSVTDHQmvgnyeCTFCNKKYPYASSLYIHMRKHTEKSAYSCDGCGKPYSQKISLNIHQDQCEAFKNR >UniRef50_A3KP43(302-382:394) Zgc:162936 protein n=5 Tax=Danio rerio RepID=A3KP43_DANRE E=5e-05 s/c=0.60 id=23% cov=96% --HSLDSHIQKRELSGGNCLIKYTAEKPFACQLCDKSYKNKTHLDSHMKIHAGEKPFPCDQCGGSFSNKAALGSHM-KVHIGES- >UniRef50_B0WXY7(194-270:358) Zinc finger protein 557 n=1 Tax=Culex quinquefasciatus RepID=B0WXY7_CULQU E=2e-05 s/c=0.65 id=18% cov=91% ---HESRSDAAEDKQNDSINNGSQPRNTYQCPECPTKFTSHQRLAAHVIKHAGNKPYKCRnSCEKEFATTKNRRKHEQRC------ >UniRef50_O45526(25-76:250) Protein F47H4.1, confirmed by transcript evidence n=3 Tax=Caenorhabditis elegans RepID=O45526_CAEEL E=0.0003 s/c=0.89 id=22% cov=60% -----------------------------VCSSCSQNFQHSASLNRHRQLMHSNE-HTCMMCERALNQKETIREHMRNEH----- >UniRef50_B7QMV4(4-80:114) Zinc finger protein, putative n=1 Tax=Ixodes scapularis RepID=B7QMV4_IXOSC E=0.0008 s/c=0.59 id=21% cov=91% --YENHFHGGSGHPSANYVADADRPRDRpFRCKYCARQFSLKGNMVSHERMHTRERPYSCTHCPRSFMWHSAFINHLRR------- >UniRef50_P10925(615-693:782) Zinc finger Y-chromosomal protein 1 n=74 Tax=Euteleostomi RepID=ZFY1_MOUSE E=3e-05 s/c=0.63 id=19% cov=92% ---HCNHKSSNSSDLKRHIISVHTKAYPHKCDMCSKGFHRPSELKKHVATHKSKKMHQCRHCDFNSPNPFLLSHHILSAH----- >UniRef50_B7QDL7(257-334:361) Zinc finger protein, putative (Fragment) n=1 Tax=Ixodes scapularis RepID=B7QDL7_IXOSC E=2e-05 s/c=0.64 id=22% cov=59% -------------------MAMHLGQKSHLCEHCGKAFRQRSQLRLHTFRHQGVRKYDCATCPSKFLT----------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 2895 * 2047 1429 * * * * * * 1988 * * 1 0 * * * * * * 3935 0 0 G 2 3435 * * * * 597 * * 3773 * * 3516 * * * 3542 * * * * 2 0 * * * * * * 4571 0 0 H 3 * * * * * 4491 418 4555 * * * 4700 * 4630 4540 * * * * 4555 3 0 * * * * * * 6139 0 0 H 4 5017 * * 3842 * * 865 4056 5312 3455 * * * 5219 3521 5202 * 4934 * * 4 0 * * * * * * 6689 0 0 H 5 * 5166 * 3330 5488 5411 1622 5602 * 3951 * 4338 * 3317 3104 5349 4293 4250 * 5471 5 0 * * * * * * 7052 0 0 H 6 3108 3636 4026 4267 * 5449 2327 * 2912 4581 * 4416 * 3940 3933 3820 4471 * * * 6 0 * * * * * * 7193 0 0 H 7 5492 * 4858 4156 4617 4283 1228 * 3140 * * 4075 * * 4606 3790 5714 5806 * 4473 7 55 4742 * 1768 502 * * 7406 1625 0 H 8 6616 * * 6133 * 3097 1522 * 3202 4816 * * 6033 3400 3702 3983 3842 * * 4424 8 0 * * * * * * 7482 0 0 S 9 4898 5828 3719 3551 * 4173 * 4094 4255 3393 4899 6754 5783 3834 * 1945 3197 5256 * * 9 0 * * * * * * 7542 0 0 H 10 3467 6154 4237 5714 5010 4221 2421 * 4054 * * 2842 4356 4935 3982 3327 4775 4945 * 4679 10 24 5926 * 2585 263 * * 7542 1000 0 M 11 3514 * 5597 5862 * 4507 5963 3950 3317 4311 4271 4282 3350 4189 3580 2719 4788 4339 * 5506 11 23 * 6001 * * * * 7565 0 0 G 12 4588 5894 5657 3600 * 1745 6363 4899 4218 4894 * 4753 4434 4855 3382 3228 3977 * * 5383 12 0 * * * * * 0 7610 0 1000 D 13 * 5837 1937 2892 * 5925 4934 5516 3638 5076 * 4015 4219 3093 4526 3423 5323 6476 * * 13 11 7057 * 0 * * 0 7566 1000 1000 G 14 3699 * 3409 5279 * 1550 6182 * 3371 5072 * 5284 3802 4691 6016 3471 4908 5090 * 5879 14 0 * * * * * 0 7632 0 1000 E 15 5213 6205 3653 2549 5944 6255 5345 6050 4141 4479 5583 3510 3802 2854 5714 2978 4526 6134 * 5934 15 0 * * * * 0 * 7676 0 1000 G 16 2747 4394 5345 4531 6127 2470 6393 6020 3850 4424 5420 4674 5288 * * 2257 4580 4096 * * 16 13 * 6772 * * * * 7698 0 0 A 17 3185 * 3576 5306 5798 2797 5382 * 3204 6300 4306 4593 4624 5333 5970 2365 3880 5175 * 6520 17 53 5379 6368 654 1456 0 * 7714 1658 1000 G 18 3140 * 3958 6293 4686 2441 3703 6279 3866 5348 5551 3141 6129 4554 5530 3253 4583 5078 * 6149 18 0 * * * * * 0 7734 0 1000 V 19 3805 6575 5180 4190 * 5056 3752 3709 4266 6454 5953 6226 2191 5344 * 3114 3603 3052 * * 19 35 * 5378 * * * 0 7744 0 1000 L 20 3408 4780 6302 4694 4250 4767 * 4135 4440 2115 6842 5210 4743 5297 4495 3269 3390 4235 * * 20 27 5764 * 1639 559 * 0 7709 1572 2272 G 21 4080 * 5385 4442 6605 2784 6029 6494 4136 6549 * 2598 4300 4110 2920 2922 4341 6406 5469 * 21 40 5204 * 1999 415 * 0 7688 1682 2272 L 22 3562 * 4927 4911 6036 4187 * 4590 3421 2858 4113 6622 4843 4198 3971 4030 3679 2922 * 6156 22 10 * 7137 * * 0 * 7658 0 2272 S 23 3175 6230 3634 6687 * 3758 2891 * 4866 6544 5628 4506 6458 3981 6083 1935 3807 * * 4461 23 13 * 6749 * * * 0 7721 0 1000 A 24 3129 6307 4029 4171 6087 3893 * * 3694 3644 * 5048 5142 4987 4036 2862 2705 5013 5690 5335 24 49 4919 * 971 1029 * 0 7713 2249 1709 S 25 4191 * 5013 3720 6611 3467 * * 3816 5029 * 4766 2540 3885 4377 2529 3543 4251 * * 25 16 * 6499 * * * 0 7706 0 1709 A 26 2722 * 3677 2860 6483 4144 6476 6072 3655 4280 6272 6271 4122 3722 3442 3335 5079 5158 * * 26 16 6481 * 1585 585 1404 685 7699 1000 2227 E 27 6425 * 3777 3202 * 3325 4455 * 2302 6530 6244 3561 5686 3491 3315 4508 3820 6260 * 6242 27 14 6686 * 2585 263 * 0 7765 1000 1709 C 28 3731 5562 3917 5423 5316 5230 * 5311 3626 3458 5676 6288 2282 5659 3104 3177 3637 * * * 28 35 5375 * 0 * 921 1084 7765 1793 1709 H 29 * 5709 * * 2343 * 1636 * 6391 4251 6495 5373 * 6340 * 4471 6377 7647 4685 2006 29 27 6902 6623 3000 193 * 0 7664 1000 1000 L 30 3995 6486 * 4902 6352 5853 6285 3977 2962 3968 4206 * 5050 2828 3050 6863 2980 3328 * 6199 30 42 5112 * 2298 328 854 1163 7541 2347 1567 C 31 * 29 * * * * * * * * * * * * * * * * 5672 * 31 0 * * * * 0 * 7596 0 1000 P 32 6437 * 2647 3153 * 3750 4777 6416 3464 5067 * 3210 2581 4057 * 3969 4405 5201 * * 32 0 * * * * * * 7592 0 0 V 33 6382 * 3837 3740 4025 * 3981 2556 4295 3549 5416 6890 6453 5262 3769 4202 5068 3081 * 3899 33 100 3902 * 2524 276 * * 7592 2238 0 C 34 * 0 * * * * * * * * * * * * * * * * * * 34 0 * * * * * * 7592 0 0 G 35 5878 * 3563 3967 5517 1713 4049 * 4370 5403 * 3368 3725 5037 6371 2961 5521 * * 6663 35 17 6386 * 0 * * * 7592 1000 0 E 36 3290 6436 6389 4914 6243 * 5517 * 1360 5792 * * * 3068 2914 5093 4341 5544 5989 5025 36 0 * * * * * * 7592 0 0 S 37 4300 6416 4750 4482 * 4465 6778 3784 3911 5661 4897 5060 5724 4152 4299 3019 3116 2223 * * 37 0 * * * * * * 7592 0 0 F 38 5682 5678 * 6367 534 * * * * 5020 6389 * * * * 5741 5312 6386 * 2647 38 0 * * * * * * 7592 0 0 A 39 3745 6467 4835 4825 * 4945 5342 6881 3283 * * 3939 3129 4176 3840 2397 3036 4758 * 5504 39 0 * * * * * * 7592 0 0 S 40 5734 6664 4664 6244 5771 5544 3289 5650 4409 5293 6634 3429 * 3730 2487 2715 2971 6708 5197 6527 40 0 * * * * * * 7592 0 0 K 41 3686 * * 4970 5441 * 4108 6481 2144 3622 6935 4763 2971 5829 2934 4585 * 3664 6683 4663 41 0 * * * * * * 7592 0 0 G 42 3125 5883 4449 3673 7055 5152 4441 5777 3682 4859 * 3179 * 5585 3747 2617 5138 4640 6268 3612 42 0 * * * * * * 7592 0 0 A 43 3761 6776 2835 3542 6266 5674 3497 6493 4906 4111 * 2920 * 4298 4542 2499 4697 6756 * 5870 43 0 * * * * * * 7594 0 0 Q 44 5742 * * * 3240 * * 5460 * 625 4114 * * 6773 5584 * * 4582 6380 3989 44 0 * * * * * * 7594 0 0 E 45 4490 6480 4066 4384 5565 * 5705 6683 1886 3622 * 3742 * 3975 3292 5664 2969 4790 * 6526 45 0 * * * * * * 7594 0 0 R 46 4253 * 4818 4137 * 5427 5277 4152 2983 5490 6631 5625 * 4969 1487 3574 4436 4540 * 6782 46 0 * * * * * * 7594 0 0 H 47 * * * * * * 0 * * * * * * * * * * * * * 47 0 * * * * * * 7594 0 0 L 48 4526 * * 3208 7320 * * 3297 4279 2316 2811 * * 3626 3894 4768 5661 3189 * 5005 48 72 5107 5645 0 * * * 7460 2287 0 R 49 3450 * 4418 3649 6299 * * 5658 2931 4000 5106 3991 6912 4051 1616 5899 4962 6435 6841 * 49 14 6683 * 0 * 0 * 7447 1000 1680 L 50 4062 6586 * 5479 4483 * 5263 3240 3424 3087 4762 4771 * 5372 5306 3649 2302 3787 * 4574 50 11 6987 * 0 * * * 7460 1000 0 L 51 5516 6361 * 6686 6418 * 599 3899 5418 4594 5084 * * * 4967 5439 6662 4338 * 6851 51 28 6902 6540 0 * * * 7460 1000 0 H 52 3693 4633 4592 6741 5666 4968 1685 5347 4809 5031 5997 4376 * 4980 4718 3663 2595 * * * 52 78 4626 6331 2085 388 0 * 7453 2723 1000 A 53 3821 6404 4215 3266 6367 2142 * 6226 3919 6865 5630 3060 5670 5258 3708 3482 4309 6339 6670 6891 53 55 4749 * 2383 307 0 * 7446 2091 1000 A 54 3824 6238 3640 2469 6523 4038 6694 4802 2557 6320 * 3330 6613 4970 5396 3794 4361 4111 6411 * 54 21 6126 * 463 1864 * * 7463 1614 0 Q 55 4474 * 5479 4002 6223 * 4556 6715 1940 4593 6963 4329 5102 4285 2051 4717 6718 4245 * 5444 55 103 4746 4977 2189 357 * * 7463 2638 0 V 56 3930 6992 5397 4255 5453 * * 5629 3583 4342 5452 6418 1536 5397 2695 3935 5720 4926 * * 56 91 4030 * 1903 449 0 * 7552 3583 2010 F 57 * 4495 * * 2071 * 3042 4709 * 5137 5587 * * 5622 * * * 5170 5508 1189 57 0 * * * * * * 7465 0 0 P 58 5656 6224 5644 4355 5664 5208 4446 4338 2493 5559 6682 4624 3010 3420 3983 3737 3623 3841 * * 58 34 5432 * 2705 240 * * 7465 1711 0 C 59 * 96 * * * * * 5667 * * * * * * * * * 5622 * 5341 59 0 * * * * * * 7465 0 0 K 60 4676 5667 2513 4085 * * 4337 * 3241 5190 6675 4959 3116 4323 3023 3430 4271 4334 * * 60 26 5783 * 569 1617 * * 7465 1730 0 Y 61 4856 5622 6250 4865 3593 5647 3385 3045 5626 2778 4387 6438 6730 4325 5561 5553 4582 4234 5114 2976 61 70 4400 * 1284 762 * * 7465 2544 0 C 62 * 59 5667 * * * * * * * * 5622 * * * * * * * * 62 39 5221 * 1762 504 * * 7465 1203 0 P 63 4710 * 2579 2883 * 2011 4097 * 5734 4942 * 4002 3521 4822 6448 4118 4754 * * 6638 63 0 * * * * * * 7466 0 0 A 64 3562 5634 6706 4160 4303 7038 6616 5558 1723 4519 4590 5013 * 5248 2659 5078 6638 5732 6680 3874 64 0 * * * * * * 7466 0 0 T 65 2909 * 6237 5014 6378 4100 5760 * 3365 5678 6025 6426 6528 5328 2920 2704 2521 3593 6400 * 65 14 6674 * 0 * * * 7466 1000 0 F 66 6559 4243 * * 580 * * * * 5668 6364 * * * * 5369 5504 5462 * 2581 66 0 * * * * * * 7466 0 0 Y 67 3298 * * 4874 4599 4746 6829 * 2970 4888 4959 4292 4435 6218 4144 2553 3686 5514 5808 2963 67 0 * * * * * * 7463 0 0 S 68 4353 * 4600 4070 * 6396 3940 6953 4713 4945 * 4692 6352 4434 2061 2862 2713 5782 5636 5081 68 29 * 5630 * * * * 7463 0 0 S 69 3687 * 6334 4279 * 5571 6657 5026 1671 4287 * 4376 4259 4599 2595 3576 5701 6625 * 6491 69 0 * * * * * 0 7439 0 1000 P 70 3842 4663 2592 3900 4316 5086 5642 6352 4074 6682 6738 4411 4969 4713 3852 2774 3674 4948 6198 6548 70 0 * * * * 0 * 7474 0 1000 G 71 2900 * 3621 6342 6218 4290 3482 6286 5404 5109 * 2911 * 3571 4460 2720 4136 4561 * 4663 71 0 * * * * * * 7501 0 0 L 72 5345 4954 * * 4374 * * 4999 * 539 3618 * * * 5703 * * 5659 6342 4543 72 0 * * * * * * 7501 0 0 T 73 4288 * 4306 4025 5313 7036 4404 4831 2506 4816 6703 4886 * 3545 3147 3973 2672 5674 6603 5831 73 0 * * * * * * 7501 0 0 R 74 4416 * 3754 4099 * 6600 5091 4050 3758 5004 5625 3639 * 3728 1715 4197 4914 5067 * 5840 74 0 * * * * * * 7501 0 0 H 75 * * * * * * 29 * * * * * * * * 5636 * * * * 75 55 * 4751 * * * * 7501 0 0 I 76 5179 4737 * 5018 4627 6635 6570 2263 3965 2403 2535 * * 6165 5757 * 6386 3403 * 3836 76 90 * 4047 * * 0 * 7402 0 2451 N 77 4608 * 4632 3834 * 6255 6174 6173 2481 4248 * 3228 * 3221 1746 6275 * 5777 6017 5852 77 29 * 5627 * * 0 * 7415 0 2922 K 78 4582 7395 5098 6006 * * 6024 4752 2322 4032 * 3652 * 5074 2471 2979 3421 3570 * * 78 54 * 4754 * * 0 * 7482 0 1630 C 79 4699 2766 * 4519 6077 * 3761 3373 4287 4537 4950 5098 * 4033 3664 4239 4878 2576 6202 5520 79 0 * * * * 0 * 7242 0 2243 H 80 * * * 4947 * * 126 * 6124 * * * * 4773 * * * * * * 80 32 * 5490 * * * * 7236 0 0 P 81 3377 4476 * 4376 * 4608 * 4684 5467 * 5429 3150 1773 4026 5507 3044 3733 * * * 81 0 * * * * 0 * 6707 0 1000 S 82 3767 * 3716 4430 5093 2370 5048 4207 3737 5382 * 3941 4373 5483 5537 2327 4598 * * * 82 0 * * * * * * 6710 0 0 E 83 * * 3233 960 * 5446 * * 2820 * * 4384 5024 3209 * 5144 * * * * 83 0 * * * * * * 6639 0 0 N 84 * * 3480 3488 * 4288 * * 3403 * * 1418 * * 3493 2235 * * * * 84 0 * * * * * * 5905 0 0 R 85 * * * * * * * * 2663 * * * * 3562 401 * * * * * 85 0 * * 0 * * * 4940 0 0 //