HHsearch 1.5 NAME c2ltrA_ FAM FILE c2ltrA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2ltrA_.a3m DATE Sat Dec 7 08:18:18 2013 LENG 105 match states, 105 columns in multiple alignment FILT 110 out of 326 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.0 EVD 0.4599 0.8549 SEQ >ss_dssp CCSHHHHHHTTSTHHHHHHHHHHHHSCCCEEEEEEETTEEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHHHHTTCGGGTTCCCSSHHHHHHHHHHHH HTTCC >sa_dssp EEEEECEEECDEBCBAADCAADDDEEDEBDDCEDECEECDBBCADADEBEBEBECECEEDADDDAACDAADDACEEEDCEBBDADCEEEEDBDDCBDEBB EDCEE >ss_pred CCCCHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCEEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCC HHHCC >ss_conf 9779677238954569999987514548855543479827999998678999960767799999999999999840355433467763101233443212 45239 >Consensus xxxdxxxxxxKnPisxLqExxqxxxxxxPxYxxxxxxxxFxxxvxvxxxxxxGxGxSKKxAkqxAAxxaLxxLxxxxxxxxxxxxgxskexxxxxxxxxx dxxxx >c2ltrA_ NRTDLEMFLKKTPLMVLEEAAKAVYQKTPTWGTVELPEGFEMTLILNEITVKGQATSKKAARQKAAVEYLRKVVEKGKHEIFFIPGTTKEEALSNIDQIS DKAEE >UniRef50_A7RV81(214-309:414) Predicted protein (Fragment) n=1 Tax=Nematostella vectensis RepID=A7RV81_NEMVE E=1e-20 s/c=1.05 id=25% cov=89% ----------KTPVAILHEYAQRELKVKPEYSHTEGNNAatpFVAEVRISGmVYGKGEGASKRLAKQHAAETALEVLIPEVFNKISNHEITSEEHQIFDK LKIDDS--- >UniRef50_Q2TPU0(9-91:198) VP11 n=2 Tax=Liao ning virus RepID=Q2TPU0_9REOV E=8e-08 s/c=0.70 id=26% cov=59% ---------------LMQEYAIKLSESAPSYEDVGFEgpphnRSFTISATFRDKKYEGIGPSKKVARSVAANKILDDVAEE------------------- ---------- >UniRef50_B9GV44(226-318:452) Predicted protein n=3 Tax=Populus trichocarpa RepID=B9GV44_POPTR E=1e-11 s/c=0.76 id=28% cov=83% ---------------ILNEFAVKVNREKPTYNTVQSPgllPVFISTLVFDGVSYTGDaGRNKKEAEQLAARAVILSLIgNSGSSKILYEIIKSKSKLYAA LDRVKD---- >UniRef50_Q29N02(1-91:314) GA20129 n=19 Tax=Drosophila RepID=Q29N02_DROPS E=1e-09 s/c=0.71 id=22% cov=62% ---------KKSAVSNLQEFCAKSKIPVPKYDYIDGEDgGYICKIVLMDIESYGNGRSKRDSKHLAASNIMKKL-------------------------- ------ >UniRef50_B5X4I2(423-533:718) Spermatid perinuclear RNA-binding protein n=1 Tax=Salmo salar RepID=B5X4I2_SALSA E=4e-07 s/c=0.50 id=27% cov=47% ------------------------YKLLSQSGPVHAP-VFTMSVDVDSTVHEASGSSKKTAKLHVAVKVLQAM--------------------------- ----- >UniRef50_UPI00017588A5(10-107:580) PREDICTED: similar to adenosine deaminase n=1 Tax=Tribolium castaneum RepID=UPI00017588A5 E=8e-18 s/c=0.93 id=23% cov=94% -KVDLSLMSDQNPVSVLNQLRVGLKYNFIEQRGPSHAPLFKVAVEVDGQTYYGVGGSKKLAKCKAAEEALKSFIQFPNNTAYAVGGNG-----TNVDFTS DAFE- >UniRef50_C6V631(145-220:222) Ribonuclease III n=2 Tax=Neorickettsia RepID=C6V631_NEORI E=5e-09 s/c=0.82 id=21% cov=27% --------IEPNPKSALQELLQAKGMKPPVYNVID----------------------------------------------------------------- ----- >UniRef50_Q9NHD2(279-382:985) Staufen n=1 Tax=Musca domestica RepID=Q9NHD2_MUSDO E=2e-08 s/c=0.58 id=27% cov=73% --NDFKSSREKTPMCLVNDLARfnkisFQYRLTGENGPAHCKR-FTVTLKLGDEEYMAEGFKIKEAQHMAAKEAI--LKTKYKHPI-------------- ---------- >UniRef50_Q47WP5(155-247:266) Ribonuclease 3 n=310 Tax=Proteobacteria RepID=RNC_COLP3 E=1e-07 s/c=0.62 id=28% cov=45% -------------------------------------------------VVIAKGTSRRKAEQEAAQQILALIEKEREQEKEVKIKPTKQAKLAN----- ----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * * * * * * * * * * 596 * * * 1563 * * * * 1 0 * * * * * * 2130 0 0 R 2 * * * * * * * * 1942 * * * * 1985 2060 2015 * * * * 2 0 * * * * * * 2571 0 0 T 3 * * * * * * * * * 3290 * 2556 * * * * 1390 1530 * * 3 0 * * * * * * 3783 0 0 D 4 * * 649 * * 2864 * * * * * * 3051 * * 3261 * * * * 4 0 * * * * * * 3783 0 0 L 5 * * * * 2649 * * 3004 * 931 * * 2385 * * * * * * * 5 0 * * * * * * 4047 0 0 E 6 * * 1198 2507 * * * * 2711 * * * * * * 2085 * * * * 6 0 * * * * * * 4282 0 0 M 7 * * * 3466 * * * * * 1892 2459 * * * * 1783 3815 3373 * * 7 0 * * * * * * 4571 0 0 F 8 * * * * 2122 * * 2389 * 2661 3196 * * * * 2866 3373 * * 3673 8 0 * * * * * * 4571 0 0 L 9 * * * * * 4396 * 2545 * 1942 4552 * 3160 3956 3002 2496 * * * * 9 70 * 4396 * * * * 5264 0 0 K 10 * * 3928 3211 * * * * 2524 * * 2399 2840 3827 * 2632 4277 4652 * * 10 0 * * * * 0 * 5638 0 1000 K 11 * * * 4236 * * 4914 * 370 * * * 6680 3499 6606 * * 4982 * * 11 0 * * * * * * 5396 0 0 T 12 * * 2866 * * 5153 4369 * * * * 1392 5041 * * 3509 1801 * * * 12 0 * * * * * * 5608 0 0 P 13 3221 * * * 3662 * * * * * 5041 * 518 * * 5510 * * * 3983 13 0 * * * * * * 5608 0 0 L 14 5442 * * * * * * 1799 2092 3088 4730 * * * * * * 1738 * * 14 0 * * * * * * 5654 0 0 M 15 4438 3213 * * * 3122 * * * * 2418 * * 4218 * 1388 3209 * * * 15 0 * * * * * * 5654 0 0 V 16 4651 * * 3838 * * * 2030 3841 2209 5568 5503 * 3786 4754 * 4920 3279 * 3824 16 0 * * * * * * 5866 0 0 L 17 * * * * 5179 * * * * 162 4821 * * * * * * 4525 * * 17 0 * * * * * * 5883 0 0 E 18 * * * 4902 * 7089 3397 5813 * 5924 * 1768 * 1012 * * 5831 * * 5454 18 0 * * * * * * 5883 0 0 E 19 * * 4113 183 * * * * * * * * * 4031 * * * * * * 19 0 * * * * * * 5883 0 0 A 20 5785 * * * 3532 5705 * 3601 4137 1622 4194 * * * * 5831 * * 5948 1627 20 0 * * * * * * 5883 0 0 A 21 1713 2371 * * 5951 5577 5786 4549 4228 3155 5010 * * 5813 4795 5043 4097 3954 * * 21 0 * * * * * * 5883 0 0 K 22 4298 * * * * * 5115 5756 3823 * 4294 * 3138 841 5131 * 5423 4150 * * 22 72 4356 * 1861 464 * * 5883 1611 0 A 23 2709 * 6074 4994 5131 3048 6312 5095 1519 5454 * 5771 * 5134 4129 3328 4866 * * * 23 101 3882 * 1756 507 * * 5883 2136 0 V 24 4710 * 6049 3993 3754 * 4792 4809 4659 3663 3705 3217 * 3766 3490 4210 4223 2909 * 4962 24 67 * 4472 * * * * 5883 0 0 Y 25 5774 * 6257 6189 3832 3099 3886 4779 2929 3634 * 5361 * 4243 4517 3922 * 5855 4933 2215 25 0 * * * * 0 * 5897 0 1820 Q 26 5090 * 4128 3822 4323 4519 * 3122 2215 3367 8011 5903 * 5083 2891 * 4418 6156 5081 4420 26 0 * * * * * * 5906 0 0 K 27 4578 4746 4044 3367 * 4281 * 5488 2901 2658 * 5928 3869 6102 4035 3970 3045 4880 * 5799 27 0 * * * * * * 5906 0 0 T 28 4711 * * 4701 4656 * * 4193 3371 2166 6014 5043 4370 4163 4979 5750 2361 3690 * 4746 28 24 * 5910 * * * * 5906 0 0 P 29 5033 * 4789 * 5790 4518 * 3878 * * * * 519 * 5581 4642 * 4486 * * 29 28 5713 * 1585 585 0 * 5892 1000 1000 T 30 5460 * 5888 2529 5110 * 5992 5325 4363 6230 * 4483 * 3202 4146 2894 2375 3227 6411 * 30 0 * * * * * * 5906 0 0 W 31 * * 5606 4414 4101 * * * * * * 5192 5712 4443 * 4145 4727 * 5419 590 31 24 5949 * 1000 1000 * * 5928 1000 0 G 32 * * 3995 2018 * 2732 * 3821 6032 * * 3392 * 3060 3745 4282 3441 5605 * * 32 28 * 5712 * * * * 5925 0 0 T 33 5827 6224 4825 4876 3197 4378 6042 5321 5462 3475 * * 3600 4882 6234 4001 2130 3018 * 4455 33 19 6252 * 2000 415 0 * 5896 1000 1000 V 34 3677 * 5837 5845 * * * 2036 5396 3600 * * 3087 4610 5171 4404 3355 2284 * * 34 198 2962 * 2322 322 * * 5927 3094 0 E 35 4540 * 3433 1943 * 3976 2638 * 3586 * 5462 * 4508 3859 5403 4132 4430 5874 * 5853 35 192 3008 * 1919 443 * * 5927 3231 0 L 36 4255 4497 5071 3653 4132 4293 1893 5195 6279 3612 4847 4555 5459 4257 5015 4154 5851 4710 * * 36 40 5180 * 2461 289 * * 5921 1662 0 P 37 3318 * 3532 2969 * 4986 * * 3455 * 4394 3117 2098 4434 4197 4245 6269 * * * 37 176 3799 4541 1805 486 * * 6208 2477 0 E 38 * * 3443 3327 * 4274 6036 * 2967 * * 2557 3262 3622 2987 3659 4636 6303 * * 38 152 4973 3875 514 1738 0 * 5685 1582 1573 G 39 4578 * 5814 4106 * 2035 * * 5108 3248 * 4664 5916 5111 4443 3029 2945 3049 * * 39 241 2701 * 1785 495 0 * 5451 3410 2518 F 40 * * * * 281 * * * * * * * * * * * * * 4751 2840 40 0 * * * * * * 5579 0 0 E 41 4893 * * 3064 * 6932 4493 3932 2755 5420 * 4990 * 4205 3925 4102 2387 3128 6239 5133 41 0 * * * * * * 5581 0 0 M 42 3405 2517 * * 5582 6607 * 3026 5962 5291 3183 * * * * 3057 4600 2101 * 5022 42 0 * * * * * * 5581 0 0 T 43 3750 6212 * 2844 * * 6218 6212 3296 * * 3858 * 3619 4434 3090 1951 3806 * * 43 0 * * * * * * 5581 0 0 L 44 3369 2238 * * 6171 * * 5039 * 3533 5794 * * * * * 6566 911 * * 44 11 7096 * 0 * * * 5581 1000 0 I 45 * 6574 5743 3026 4697 * 5281 3278 2827 3520 6205 5732 * 6683 5539 3870 2753 2935 5603 5582 45 0 * * * * * * 5581 0 0 L 46 4007 6634 * * 3181 * * 2763 * 2103 6004 * * * * * 6707 1447 5820 5166 46 60 4610 * 1035 966 * * 5581 2083 0 N 47 6621 * 2888 3732 * 2515 * * 3923 5718 4970 1535 6880 4676 6030 4171 * 6121 * 6645 47 35 5367 * 0 * * * 5595 1849 0 E 48 6175 * 2116 2651 6359 1683 * * 4193 * * 3308 * 4144 6112 5320 5573 * * * 48 89 4059 * 405 2030 * * 5595 2844 0 I 49 5606 * 6954 4020 5292 * 5352 2316 2932 2711 4640 5271 * 3958 4702 6931 5814 2840 * 4616 49 76 4286 * 0 * * * 5595 2655 0 T 50 5596 * * 2988 4495 * 6430 5214 3618 6547 5981 4517 * 3208 3401 4555 2223 3729 6795 3743 50 48 4924 * 358 2186 * * 5598 1943 0 V 51 3220 6150 7001 4156 3095 2408 5606 6438 * 6104 * * * * * 4186 3449 3901 5802 2112 51 104 3839 * 0 * * * 5598 2752 0 K 52 * 5423 5923 2595 4423 * 4828 4920 3425 * 4609 4816 * 3824 3489 3876 3001 3216 * 4323 52 44 5071 * 0 * * * 5598 1862 0 G 53 2878 * * * 6316 495 * * * * * * * 5038 * 3347 * 6249 * * 53 8 7416 * 0 * * * 5597 1000 0 Q 54 4654 * 5547 2477 5409 6127 6585 4092 3951 3937 5762 6301 5394 3306 4082 3334 3301 3770 6963 5291 54 37 5292 * 227 2778 * * 5596 1798 0 A 55 2626 * 6603 * * 554 6620 * 5626 * * * 5201 * * 4130 * 5829 * 6128 55 66 4490 * 817 1209 * * 5600 2195 0 T 56 5569 4681 6363 * 6457 3501 6975 6804 3042 5973 6481 3822 3585 4539 2946 2493 3032 5634 * 5985 56 79 4224 * 1000 1000 * * 5600 2135 0 S 57 * * * * * 5437 5626 * 5041 * * 2161 * * * 876 2662 * * * 57 0 * * * * * * 5600 0 0 K 58 * * * * 5699 * * 4424 384 4653 5630 * * * 3211 * * * * * 58 21 6128 * 0 * * * 5600 1000 0 K 59 4774 * 6412 * * * * 6106 557 * 5763 5088 6242 4032 2972 7018 * * * * 59 0 * * * * * * 5600 0 0 A 60 2691 6716 3466 2382 6446 5767 * 3891 3489 3330 * 4247 * 4262 4919 4466 4951 4756 * 6050 60 0 * * * * * * 5600 0 0 A 61 117 * * * * * * * * * * * * * * 3679 * * * * 61 0 * * * * * * 5600 0 0 R 62 6380 * * 1455 * * * * 1219 * * * * 4160 3227 5699 6432 * * * 62 0 * * * * * * 5600 0 0 Q 63 5785 7242 * 4906 6114 6136 2746 6048 3904 4492 5546 4523 * 1401 3209 4432 5680 6918 * 6363 63 0 * * * * * * 5600 0 0 K 64 2666 * 3241 3911 6546 5452 5024 5080 3366 3863 4971 2511 * 3702 6029 3958 * 4417 * * 64 0 * * * * * * 5599 0 0 A 65 249 5846 * * * 5767 * * * * * * * * * 5704 * 3268 * * 65 0 * * * * * * 5599 0 0 A 66 78 5985 * * * * * * * * * * * * * 5763 * 5761 * * 66 0 * * * * * * 5590 0 0 V 67 4632 * 6622 2051 4830 6487 * * 2804 4079 4178 4564 * 2952 3658 4409 4447 5421 * 4744 67 0 * * * * * * 5617 0 0 E 68 3119 * 3926 3288 5929 * * 5096 2370 4181 6622 3218 * 3358 4757 6340 5148 3198 * 5582 68 0 * * * * * * 5617 0 0 Y 69 974 * * * * 6178 * 3989 * 3327 2757 * * * * * 4043 3395 * 6517 69 0 * * * * * * 5617 0 0 L 70 * * * * 5642 * * 4514 * 259 4445 * * * * * * 5227 6004 6324 70 37 6513 6139 2807 222 * * 5617 1000 0 R 71 4127 * 5434 2003 6540 * * * 2048 6514 5391 4385 6541 3056 3472 4088 5060 5317 * * 71 0 * * * * * 0 5681 0 1000 K 72 3787 * 6014 3612 * * * 4773 1499 6873 5911 3903 * 6274 3344 2840 4135 5361 * 5988 72 24 5897 * 0 * 0 * 5516 1000 1000 V 73 * 6471 * * 5656 * * 2330 * 767 3833 5936 * * * * * 3381 * * 73 0 * * * * * * 5510 0 0 V 74 3571 * 4298 4105 5701 * * 3131 2169 4139 5611 5900 * 4555 4095 5110 4938 2704 * 4604 74 26 5803 * 0 * * * 5389 1000 0 E 75 * 5465 4014 1631 * 4780 * * 3129 5043 * 3599 3736 3110 5382 3502 5268 * * * 75 0 * * * * * * 5355 0 0 K 76 5157 * 4098 2048 5274 4295 * * 2239 5244 * 4262 * 3220 2773 5356 * 5232 * * 76 103 3860 * 0 * * * 5194 1000 0 G 77 3446 * 3061 3256 4444 2121 * * * * 5213 3321 4823 * 4698 4373 * 3235 * 4249 77 0 * * * * * * 4755 0 0 K 78 3552 * * 2664 4602 * * * 1189 * * 4603 * 4332 * 2423 * * * * 78 0 * * * * * * 4624 0 0 H 79 4653 4724 3309 2864 4307 * 2186 * * * * 2561 * 4212 * 3267 * * 4297 4804 79 0 * * * * * * 4693 0 0 E 80 * * * 2115 * 3775 * * 1852 * * * 3256 2694 * 4172 3259 * * * 80 0 * * * * * * 4798 0 0 I 81 4172 * 3218 * * * * 1828 3810 3997 * * * * * 2209 2780 4066 * * 81 0 * * * * * * 4699 0 0 F 82 * * * 3490 2979 2063 * * 3417 3953 * * 4009 * * 1979 * * * 3815 82 86 * 4115 * * * * 4632 0 0 F 83 2845 * * * 3932 3804 * * * 3366 * 3750 2059 * * 2727 * 3439 * 3853 83 118 3670 * 1000 1000 * 0 4576 1000 1000 I 84 * * * 2589 * * 3750 3932 3439 2735 2865 * 3872 * * * 3493 2670 * * 84 107 * 3804 * * * 0 4576 0 1000 P 85 * * 3316 3649 * 3605 * 2524 * * * * 1379 * * 3433 * 3527 * * 85 122 * 3619 * * 0 * 4453 0 1611 G 86 3525 * * * * 825 * 2673 3285 * * * * * * 3484 * * * * 86 0 * * * * * 0 4480 0 1000 T 87 * * * 3484 * * * * 2144 * * 3657 2298 * 3439 3525 2166 * * * 87 0 * * * * * 0 4480 0 1000 T 88 * * 3525 * * 3657 * * * * * * 3709 * 3484 1246 2021 * * * 88 119 * 3657 * * 0 * 4480 0 1000 K 89 * * * 2162 * * * * 929 * * * * 3549 2591 * * * * * 89 0 * * * * * 0 4448 0 1000 E 90 * * 3465 1070 * * 3731 * 3305 * * * 3712 3263 * 3715 * * * * 90 0 * * * * * 0 4448 0 1000 E 91 3101 * 2506 1996 * * 3524 * 3580 * 3297 * * * * 2439 * * * * 91 0 * * * * * 0 4154 0 1000 A 92 1860 * * * * * * * 3101 3580 * 3557 * 2406 * 3742 3551 3462 * * 92 0 * * * * * 0 4154 0 1000 L 93 * * * * * * 3350 2197 * 1131 * 3107 * * * * * * * 3168 93 0 * * * * 0 * 3969 0 1000 S 94 1656 * 3370 * 2258 * * * * * * * * * * 2382 3476 * * 3392 94 0 * * * * * * 4083 0 0 N 95 3291 * 2258 3370 * * * * * * * 1009 * * * 3392 * * * * 95 0 * * * * * * 4083 0 0 I 96 * * * * * * * 3234 3099 1613 * * * * * 2963 3283 2191 * * 96 0 * * * * * * 3811 0 0 D 97 * 3110 1474 2028 * * * 2722 * 2973 * * * * * * * * * * 97 0 * * * * * * 3564 0 0 Q 98 * * * * 3146 * * * 2004 * * * * 1501 2912 2722 * * * * 98 0 * * * * * * 3564 0 0 I 99 * * * 2860 * * * 1827 * * * * * * * * 2946 1150 * * 99 0 * * * * * * 3418 0 0 S 100 * * 2675 * * * * * 2432 * * * * * * 1067 2468 * * * 100 0 * * * * * * 3155 0 0 D 101 * * 269 2554 * * * * * * * * * * * * * * * * 101 0 * * * * * * 3155 0 0 K 102 2131 * * * * * * * 957 * * * * * * 1962 * * * * 102 0 * * * * * * 2351 0 0 A 103 1524 * * * 1693 * * * * * * * * * * * 1544 * * * 103 0 * * * * * * 2036 0 0 E 104 1544 * * 606 * * * * * * * * * * * * * * * * 104 0 * * * * * * 2036 0 0 E 105 * * * 0 * * * * * * * * * * * * * * * * 105 0 * * 0 * * * 1579 0 0 //