HHsearch 1.5 NAME c2lt4A_ FAM FILE c2lt4A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2lt4A_.a3m DATE Sat Nov 16 08:48:50 2013 LENG 71 match states, 71 columns in multiple alignment FILT 104 out of 318 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.0 EVD 0.4432 0.7763 SEQ >ss_dssp CCCCCCCCCTTCBCBCSSSSCCEEEEEEEEEETTEEEEEEEEEETTTTEEEEEEHHHHSSCCCBCCCCCCC >sa_dssp EEEEEEEEEDDCDBDBEEEBEADADBCDEDEDEEEECCBBDAEAEEEDDEDEBCDEECEEDDBEEEEEEEE >ss_pred CCCCCCCCCCCCEEEECCCCCEEEEEEEEEEECCEEEEEEEEEECCCCCEEEEECCCHHEECCEECCCCCC >ss_conf 97410223898899938862399964679874884347999997589839999646500031041157679 >Consensus xgxxxxxfxxGDxVVyxxhGvgxixxixxxxxxgxxxeyyxlxxxxxxxxixvPvxxxxxvxlRxixsxeE >c2lt4A_ AGHMQTSFKTGDKAVYPGQGVGEVMGIEHTEVAGQRQSFYVLRILENGMRIMIPINKVGSVGLREIISEED >UniRef50_A3V3T7(59-127:225) Putative CarD-like transcriptional regulator n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V3T7_9RHOB E=3e-16 s/c=1.25 id=28% cov=94% ----KSEFSPDQFVVYPAHGVGKIVSVETQEVAGFELEMFVIAFEKDKMTLRVPTHKATDVGMRALATPD- >UniRef50_A9WLY1(138-206:301) Transcriptional regulator n=113 Tax=Actinobacteria (class) RepID=A9WLY1_RENSM E=2e-15 s/c=1.21 id=24% cov=99% -GRIHMVFEIGETVVYPHHGAAKIEEIKMRTIKGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRDVVGKE- >UniRef50_Q9RRL6(5-72:169) Putative uncharacterized protein n=1 Tax=Deinococcus radiodurans RepID=Q9RRL6_DEIRA E=2e-09 s/c=0.94 id=28% cov=96% ----QTAFRPGDRVVLPPYGLGIVSGTCQHTRSGEGCWYYQVDFPESGHLALVPTHSPDQAGLRPALRQRE >UniRef50_C6LBJ8(47-117:222) Transcriptional regulator, CarD family n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LBJ8_9FIRM E=6e-08 s/c=0.83 id=23% cov=93% -----TMFEVNNYVVKYNSGVCKVEDVldgQKADFKDNKMYYLLIPLAEKSARIYIPLERGEKV-LRRVLTYEE >UniRef50_C2L120(1-66:169) CarD family transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2L120_9FIRM E=2e-07 s/c=0.86 id=22% cov=90% ------MYQSGTYVVYGCKGVHKIIGTTHLNLEGipKDKEYYILQaVKKPDGAVYAPVE-AGKTNMRSVMTRE- >UniRef50_Q12A09(516-588:1201) Transcription-repair coupling factor n=2 Tax=Burkholderiales RepID=Q12A09_POLSJ E=2e-09 s/c=0.87 id=18% cov=93% -----SELNVGDPVVHSAHGIGRYRGLLNLDLGQDKnpdgspslQEFLHLEYA-DKATLYVPVSQLHLISRYTGVSAEE >UniRef50_C0EH61(5-73:176) Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EH61_9CLOT E=8e-08 s/c=0.84 id=17% cov=97% --QVKAVFQINDTVMYGNTGVCRIVDIRPEKFSDRELVYYILQPVYSESeTIYCPVDS-DKIKIRKLLSLQE >UniRef50_A8SKW1(3-64:159) Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SKW1_9FIRM E=0.0003 s/c=0.75 id=26% cov=87% ---------VGEKIFYPMHGAGLIKSIEDKDLGDYCERFYVIElPFEQNLHIFIKEDDIDKFEFRKLVNED- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 G 2 * * * * * 0 * * * * * * * * * * * * * * 2 0 * * * * * * 2932 0 0 H 3 * * * 3241 * * 3406 * * 2346 * * * 1360 3188 3269 * * * * 3 0 * * * * * * 3921 0 0 M 4 3269 * * 3328 * * * 2391 * * 2250 * * 3381 2389 * * 3199 * * 4 0 * * * * * * 3921 0 0 Q 5 2852 * * 3671 * * 4286 4770 2209 4415 * 3594 * 2427 4068 4320 * 4227 * * 5 0 * * * * * * 4899 0 0 T 6 4740 * 5612 3419 * * * * 3149 4837 4990 * 3492 4936 4091 1930 2141 * * * 6 0 * * * * * * 5310 0 0 S 7 4417 * 4675 2247 * 6162 * * 4849 * 1169 4409 * 4214 * 3909 5790 5349 * * 7 0 * * * * * * 6063 0 0 F 8 * * * * 991 * * 6325 * 1780 * * * * * * * * * 2370 8 9 7265 * 1585 585 * * 6135 1000 0 K 9 4046 * 4332 3123 * * * 5656 1489 * * 3467 * 2579 4638 4223 4901 6168 * * 9 13 6813 * 1585 585 * * 6161 1000 0 T 10 4901 5854 6225 3999 * * * 2261 4139 5016 * * 2322 * 6520 5352 4661 1726 * * 10 0 * * * * * * 6209 0 0 G 11 * * 4663 * * 338 6660 * 5038 * * 3114 * * 6226 * * * * * 11 0 * * * * * * 6331 0 0 D 12 6236 * 453 3015 * * * * * * * 5067 * 4756 * 5081 4784 * * * 12 0 * * * * * * 6331 0 0 K 13 3884 * * * 3394 * 4305 4039 3338 3093 5706 5984 6067 6412 4057 6581 3625 5003 5480 2042 13 0 * * * * * * 6331 0 0 A 14 4881 * * * 5690 * * 2305 * 4418 5910 * * * * * * 554 * * 14 0 * * * * * * 6331 0 0 V 15 5201 * * * 5814 * * 3118 * 3792 5060 * * * * 4916 4832 579 * * 15 0 * * * * * * 6331 0 0 Y 16 * 5201 * * * * 1397 * 4853 5848 * 6744 * * * * * * * 911 16 0 * * * * * * 6331 0 0 P 17 3746 * 5855 3231 7036 2303 * 4317 5093 4304 * 6867 1475 * 5231 5440 6827 6216 * 5562 17 0 * * * * * * 6331 0 0 G 18 3595 4345 2893 4078 * 5172 3952 5756 4388 5903 3400 2671 5208 6046 4808 4234 3985 4521 * 6715 18 0 * * * * * * 6331 0 0 Q 19 * * * 4452 5353 * 1098 * 4788 * * 4471 * 3152 6136 4250 5498 6651 * 2556 19 25 * 5880 * * * * 6331 0 0 G 20 * * * * * 46 * * 6057 * * * * * * 5911 * * * * 20 0 * * * * 0 * 6298 0 1000 V 21 3134 * * * * * * 1668 * 3947 6136 * 5950 * * 5690 * 1130 * * 21 0 * * * * * * 6331 0 0 G 22 3889 1447 * * * 991 6291 * * * * * * * * * * 4814 * 6136 22 0 * * * * * * 6331 0 0 E 23 6133 * 6439 3732 6060 * 7295 2985 2197 4094 * 6412 * 3920 1785 5666 4399 4657 * * 23 0 * * * * * * 6331 0 0 V 24 * * * * 2782 * * 1459 * * * * * * * * * 1685 * 2476 24 0 * * * * * * 6331 0 0 M 25 4111 * 4460 2502 * 5444 * 4080 2933 4167 5513 6581 * 4458 3418 3624 3831 2958 * * 25 0 * * * * * * 6331 0 0 G 26 3980 * 3462 2621 * 1311 6537 * 3776 * * 3993 * 5401 5605 4038 5861 6435 * * 26 0 * * * * * * 6331 0 0 I 27 * * * * 5071 * * 1066 5572 2113 5243 * * * * * 3554 3123 6133 * 27 36 5352 * 1031 970 * * 6331 1616 0 E 28 5236 4085 4744 1767 * 2992 * 6783 3358 5723 * 6451 * 4393 4264 3758 3972 3581 * * 28 0 * * * * * * 6331 0 0 H 29 * 6688 4411 2761 6658 * 4316 5226 2943 * 5191 4573 4666 4878 3739 3910 2249 3948 * 5686 29 0 * * * * * * 6331 0 0 T 30 6237 * 6683 5839 * * 4869 2614 2251 2723 4549 5125 5369 3757 3019 * 5349 3593 * * 30 14 6697 * 1000 1000 * * 6331 1000 0 E 31 * * 2351 2349 5713 * 5822 * 3279 4992 5088 3502 5668 * 6255 3290 2746 5823 * 5880 31 50 5541 6277 1000 1000 * * 6331 1514 0 V 32 5047 * * * 2498 5574 6688 2230 6433 3123 4906 6830 6403 6644 4956 5687 4326 2085 * 5542 32 0 * * * * * 0 6333 0 1540 A 33 2834 5697 3521 4737 6080 2226 * 5706 4542 4110 6058 3173 7105 6403 4304 2943 5218 6069 * * 33 26 5805 * 575 1606 * 0 6333 1511 1540 G 34 5041 * 2682 5805 * 867 5201 * 5352 7046 * 3937 7092 6040 * 3693 6686 * 6219 * 34 86 4622 5877 795 1239 * 0 6333 2307 1540 Q 35 4457 * 5245 2930 5518 4273 4979 3583 3469 5229 7197 3373 5758 3571 4417 3565 4549 3441 * 5705 35 0 * * * * 708 1366 6301 0 2064 R 36 5112 5713 3094 2597 6392 4908 5269 5867 2203 6326 4983 5829 3869 5456 4525 4710 3772 4358 * 7050 36 61 4606 * 2042 401 0 * 6298 2434 1000 Q 37 * 4684 * 5094 * 5155 5057 4319 2517 3754 4975 5051 * 2603 2297 5134 4451 3972 * 7204 37 0 * * * * * * 6324 0 0 S 38 * * 2133 1412 * * * 5815 2951 4094 7070 6037 6730 5329 4683 4776 5851 6563 5878 6250 38 81 4202 * 1329 732 * * 6324 2660 0 F 39 5753 3391 * * 2571 * 6499 * * 5251 5640 * * * * 6646 6447 5229 * 707 39 0 * * * * * * 6324 0 0 Y 40 4909 6731 * * 4279 * * 3442 * 2330 5967 * * * * * 5595 3205 * 1090 40 0 * * * * * * 6324 0 0 V 41 5168 7028 5927 3702 6709 * 5986 2609 5115 3284 * 5926 * 3735 4568 6798 3118 1941 5495 6635 41 0 * * * * * * 6324 0 0 L 42 * * * * 5680 * * 1682 * 926 3887 * * * * * * 3737 * * 42 11 6993 * 0 * * * 6324 1000 0 R 43 4816 * 5117 1654 * 6824 4783 5722 2929 7059 * 4932 4316 3331 3668 4068 5380 4804 * 4855 43 160 3250 * 0 * * * 6324 3457 0 I 44 * 5411 * * 2463 * 6810 3818 * 3776 5261 * 2444 * 5390 * 6472 2968 * 1891 44 90 5126 4959 0 * * * 6297 1973 0 L 45 2179 * 5711 3000 4471 * * 3502 3876 3239 * * 3907 5781 3634 4964 * 4283 6220 3932 45 52 5521 6166 0 * 0 * 6261 1599 2020 E 46 4675 * 3139 2252 5038 2659 5636 6203 3765 5327 6621 3186 7000 3575 6821 5118 * 7044 * 4070 46 0 * * * * 0 * 6304 0 1443 N 47 5465 * 2318 3845 * 2678 * * 4565 * 5638 2223 5343 4469 6472 2623 5522 6760 * * 47 99 4922 4921 0 * * * 6297 2044 0 G 48 6854 * 1698 3239 * 2669 6667 * 2867 * * 2905 * 5285 6563 3894 4789 * * * 48 316 5335 2539 1144 869 401 2043 6284 2183 2241 M 49 3925 * 4727 6555 6293 3707 5062 4333 4334 2198 2132 * * * 5430 2701 5223 5842 * * 49 212 4183 3616 794 1240 0 * 6167 2479 3645 R 50 5094 * * 5058 * * 5770 6201 1549 4820 5707 5006 * 5614 2722 4699 1985 5772 * * 50 14 6668 * 0 * 0 * 6271 1000 2603 I 51 4343 * * * 4984 6439 * 1574 * 1471 * * * * * * 5638 2389 * * 51 13 6797 * 0 * * * 6297 1000 0 M 52 * 5386 * 5190 2890 * 5555 6401 4609 3590 2650 6632 * * 4947 4244 6425 * 6233 1407 52 14 * 6717 * * * * 6287 0 0 I 53 5055 6544 * * 5577 * * 2257 * 2631 6695 * * * * * 4594 978 * 6848 53 0 * * * * 0 * 6299 0 1000 P 54 5870 * * * * * * * 5784 * * 5642 102 * * 6274 * * * * 54 0 * * * * * * 6287 0 0 I 55 4387 6202 * 4565 5250 * * 2984 6082 3981 6461 * * * * 5859 2639 1070 * * 55 0 * * * * * * 6287 0 0 N 56 4021 * 1449 2584 * 4155 5208 * * 5636 * 2948 * 5822 * 3501 5130 * * 4722 56 106 6196 4134 0 * * * 6282 1000 0 K 57 6360 * 5071 5812 * 4780 4643 * 2596 6583 * 2033 * 2892 2535 2874 * * * * 57 216 5545 3088 0 * 956 1045 6263 1511 2501 V 58 1930 * * 4774 4869 5802 * 2661 5461 2843 4274 * 5471 * 5680 4463 6954 2462 * * 58 51 6228 5545 0 * 177 3111 6173 1000 3709 G 59 2865 * 2014 3001 * 3770 3314 * 5519 4950 6641 3852 5384 4174 6590 4838 4102 * * * 59 63 6592 4959 0 * 0 * 6272 1000 2067 S 60 4971 * 4992 3357 * 6560 6757 * 2295 2502 6951 * 5820 2932 3293 3434 4509 4519 * * 60 82 * 4182 * * 579 1597 6254 0 2245 V 61 4748 * 4525 * 4994 * * 1806 5272 3334 * 6288 * * * 3266 4776 1687 * 6246 61 70 * 4409 * * 813 1215 6254 0 3089 G 62 4064 6434 * 5247 6028 1283 5803 5432 3669 5845 5079 3319 5180 5124 3449 5361 * 6192 * 5413 62 55 * 4752 * * 247 2670 5847 0 2938 L 63 * * * * 5230 * * 2062 * 1638 1672 * * * 5308 * * 3767 * * 63 0 * * * * 591 1572 5758 0 1890 R 64 * * * * * * 5936 * * 6272 * * * 4571 143 * * * * 5434 64 0 * * * * 0 * 5825 0 1000 E 65 3589 6632 6254 4824 * 6127 5467 * 2292 5006 6360 3377 2102 * 3534 4693 3533 * * 4898 65 0 * * * * * * 5846 0 0 I 66 4052 5901 * * 5891 5464 * 1972 * 2047 * * 5815 * * * * 1620 * 4529 66 0 * * * * * * 5850 0 0 I 67 3545 5120 * * * 6151 6246 1861 * 2540 3179 * 5856 * * 3808 5303 2421 * * 67 0 * * * * * * 5893 0 0 S 68 5271 6132 3756 * * 3055 * * 6098 * * 4264 6011 6284 5159 1455 1935 * * 5936 68 0 * * * * * * 5850 0 0 E 69 4209 * * 3185 5693 4643 * 5321 1556 6158 * 5234 4494 4587 2708 3935 4933 5965 * 5823 69 0 * * * * * * 5814 0 0 E 70 4229 * 2380 1124 * * * * 3140 * * 4951 5195 4095 5084 5889 5806 * * * 70 0 * * * * * * 5776 0 0 D 71 * * 1938 436 * * * * * * * * * * * * * * * * 71 0 * * 0 * * * 5482 0 0 //