HHsearch 1.5 NAME c2lt1A_ FAM FILE c2lt1A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2lt1A_.a3m DATE Sat Nov 16 08:50:27 2013 LENG 75 match states, 75 columns in multiple alignment FILT 100 out of 328 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.6 EVD 0.4426 0.8312 SEQ >ss_dssp CCCCCCCCSCSSCCTTCEEECSSSCEEEEEEEEEEEETTEEEEEEEEEETTTTEEEEEETTTHHHHTCCCSSSCC >sa_dssp EEEEBEDEEEEEBDECBDACCEEDCDADACDCEEDEEEEEEBDBADAECEEEECECDBBCECBEEEEAEACBECE >ss_pred CCCCCCCHHCCCCCCCCEEEECCCCCEEEEEEEEEEECCCEEEEEEEEECCCCCEEEEECCCCCEECCEECCCCC >ss_conf 975653101011058989990886338996366985088201499999748982999972320013003301689 >Consensus xxxxxxxsxxxxfkvGDxVVyxxhGVgxixxixxxxxxgxxxeyyxlxxxxxxxxixVPVxxxxxigiRxvxxxe >c2lt1A_ AGHMPEGSASLQLAVGDRVVYPNQGVCRVSAIDVKEVAGQKLTFVTMRREEDGAVVMVPEGKVLAIGVRKVASAE >UniRef50_C1CXK7(3-68:178) Putative Transcriptional regulator, CarD family n=1 Tax=Deinococcus deserti VCD115 RepID=C1CXK7_DEIDV E=1e-14 s/c=1.23 id=25% cov=85% ------------FQIGDRVVLPPYGIGVVCGTCERPVAGQAHAYYQVEFPATASRAYVPVADPACTGIRRALNDQ >UniRef50_A9WLY1(136-206:301) Transcriptional regulator n=113 Tax=Actinobacteria (class) RepID=A9WLY1_RENSM E=4e-15 s/c=1.16 id=24% cov=95% -----KGRIHMVFEIGETVVYPHHGAAKIEEIKMRTIKGEEKMYLKLKVAQGDLTIEVPAENVDLVGVRDVVGKE >UniRef50_A8SKW1(3-64:159) Putative uncharacterized protein n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SKW1_9FIRM E=5e-05 s/c=0.79 id=19% cov=83% --------------VGEKIFYPMHGAGLIKSIEDKDLGDYCERFYVIELPfEQNLHIFIKEDDIDKFEFRKLVNED >UniRef50_A8RWH1(525-588:1200) Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RWH1_9CLOT E=3e-09 s/c=0.99 id=27% cov=83% -----------ELSVGDYVVHEEHGLGIYKGIEKVERDKVIKDYIKIEY-GDGGNLYLPATRLESI--QKYAGAE >UniRef50_B1CA11(2-66:170) Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1CA11_9FIRM E=2e-07 s/c=0.88 id=25% cov=85% ------------YKVDEIILYDTEGVCRISEITEKTFGGKKQKYYILnTVSKNSMTIYVPVDNEKQTSkMRKILSSD >UniRef50_C7CIQ8(449-505:1111) DEAD/DEAH box helicase domain protein n=9 Tax=Alphaproteobacteria RepID=C7CIQ8_METED E=2e-05 s/c=0.88 id=22% cov=77% ---------EVELRVGDVSIDRDHGLCLFEGLEAIRGGEEDEEDALRLRFADDAILMVPVSQADRI--------- >UniRef50_B0SE47(5-77:193) Transcriptional regulator n=6 Tax=Leptospira RepID=B0SE47_LEPBA E=4e-13 s/c=1.04 id=25% cov=97% ---LNEKTKEPKFKVGDYVVYPIHGVGEVTEVAKKLILGKKKDCYSLEIQGSKMKVSIPVDRAMDVGIRSIIDKK >UniRef50_Q2S6G5(453-512:1142) Transcription-repair coupling factor n=2 Tax=Rhodothermaceae RepID=Q2S6G5_SALRD E=2e-06 s/c=0.90 id=20% cov=53% ---------------GDFVVHVDHGIGRFDGMKKITVRDNQQEAVRLNFADNDV--------------------- >UniRef50_C2L120(2-66:169) CarD family transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2L120_9FIRM E=2e-06 s/c=0.82 id=19% cov=84% ------------YQSGTYVVYGCKGVHKIIGTTHLNLEGIPKDkeyYILQAVKKPDGAVYAPVE-AGKTNMRSVMTRE # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 1556 0 0 G 2 * * * * * 0 * * * * * * * * * * * * * * 2 0 * * * * * * 1556 0 0 H 3 * * * * * * 941 * * * * * 1061 * * * * * * * 3 0 * * * * * * 1556 0 0 M 4 * * * * * * * * * 1559 598 * * * * * * * * * 4 0 * * * * * * 2028 0 0 P 5 * * * * * 1705 * * * * * 1559 1499 * * * * * * * 5 0 * * * * * * 2028 0 0 E 6 * * * 751 * * * * 1301 * * * * * * * * * * * 6 0 * * * * * * 2563 0 0 G 7 2885 * * * * 456 * * 2884 * * * * * * * * * * * 7 0 * * * * * * 3233 0 0 S 8 * 3575 * * * * * * * 3676 * * * * 3383 618 3464 * * * 8 0 * * * * * * 3909 0 0 A 9 1435 * * * * 3776 * 2971 2844 * * 3678 * * 3710 2880 * * * * 9 96 * 3961 * * * * 4248 0 0 S 10 2870 * 3002 2681 2968 * 4059 * 3872 * * 4231 * 3845 * 3806 3897 * * 3944 10 0 * * * * * 0 4535 0 1000 L 11 * * * * 4879 4885 * 4876 3935 1793 2060 * 4964 3271 * 4639 4768 3442 * * 11 0 * * * * * 0 5309 0 1000 Q 12 5896 * 3069 1625 * 5586 * * 2596 * 5621 3883 * 2979 4982 3967 * 4537 * * 12 0 * * * * 0 * 5499 0 1000 L 13 * * * * 1056 * * 4444 * 1911 6410 * * * * * * * 6183 2462 13 0 * * * * * * 6335 0 0 A 14 4640 * 4381 2752 * * 5789 5099 1513 6227 * 3421 * 3252 4030 4313 5222 5981 * * 14 0 * * * * * * 6346 0 0 V 15 4527 * 5948 4009 * * * 1783 3490 5107 * * 3594 * * 4790 5676 1594 * * 15 0 * * * * * * 6360 0 0 G 16 * * 4389 * * 401 6629 * 4887 * * 3014 * 6751 5781 * * * * * 16 0 * * * * * * 6387 0 0 D 17 5600 * 505 2854 * * * * * * * 5134 * 4814 * 5567 4283 * * * 17 0 * * * * * * 6387 0 0 R 18 4393 * * * 3220 * 4784 3873 3184 3658 5279 6901 5796 6383 5214 6258 3630 3817 5166 1902 18 0 * * * * * * 6387 0 0 V 19 5614 * * * 5431 * * 2166 * 4765 * * * * * 5189 * 579 * * 19 0 * * * * * * 6387 0 0 V 20 * * * * 5126 * * 2777 * 3399 4715 * * * * 4508 5801 665 * * 20 0 * * * * * * 6111 0 0 Y 21 * 5079 5271 * * * 1467 * 4548 5936 * 6534 * * * * * * * 964 21 0 * * * * * * 6111 0 0 P 22 4460 7087 5495 3365 6774 2240 * 4966 5876 4138 * 5948 1432 * 4207 6662 6807 5048 * 6473 22 0 * * * * * * 6111 0 0 N 23 3701 4562 2906 4123 * 4467 4244 4585 5207 7017 3445 2650 5279 5148 4913 4488 3812 4023 * * 23 0 * * * * * * 6111 0 0 Q 24 6807 * * 4665 5357 * 1133 * 4375 * * 4163 * 3205 6205 4455 4887 5511 * 2798 24 0 * * * * * * 6111 0 0 G 25 * * * * * 49 * * 5986 * * * * * * 5814 * * * * 25 0 * * * * * * 6111 0 0 V 26 3082 * * * * * * 1643 * 4289 * * 5801 * * 5463 * 1090 * * 26 0 * * * * * * 6111 0 0 C 27 3592 1432 * * * 1061 5235 * * * * * * * * * * 4622 * * 27 0 * * * * * * 6111 0 0 R 28 * * 6292 4221 5986 * * 3518 2124 3717 * 6398 * 3780 1796 6323 4360 3455 * * 28 0 * * * * * * 6111 0 0 V 29 * * * * 2370 * * 1221 * * * * * * * * * 2090 * 2810 29 12 6954 * 1000 1000 * * 6111 1000 0 S 30 5079 5936 4306 2376 * 5838 * 3667 2684 4711 4990 5706 * 4746 3906 3915 3932 2894 * * 30 0 * * * * * * 6111 0 0 A 31 3811 * 3062 2778 * 1305 6384 * 3798 * * 3865 * 5795 5201 4489 7336 6630 * * 31 0 * * * * * * 6111 0 0 I 32 * * * * 6100 * * 1086 5639 2028 4112 * * * * * 3607 3195 * * 32 34 6473 6349 1585 585 * * 6111 1000 0 D 33 7025 4148 5296 1727 * 3602 * 5337 3169 5421 * * 7044 4850 5928 3437 3228 3330 * 6706 33 0 * * * * * 0 6380 0 1000 V 34 4829 6650 4578 2638 6857 * 4110 6910 2730 6306 5682 4457 5407 4426 3925 3934 2483 4454 * 5421 34 0 * * * * 0 * 6380 0 1000 K 35 5306 * * 5221 * * 6714 2600 2076 2669 4812 6303 5105 3754 2971 * 5863 3595 * * 35 9 7303 * 0 * * * 6111 1000 0 E 36 4853 * 2553 2264 * * 6242 * 3365 5070 5463 3242 5032 6686 4388 3686 2902 5734 * * 36 48 5964 5896 0 * * * 6111 1821 0 V 37 5598 * * * 2567 4429 7233 2077 5446 3298 4529 6518 4885 6736 5077 5872 5128 2231 * 6611 37 0 * * * * * 0 6386 0 1248 A 38 3272 5681 3791 4041 5025 2342 * 5919 4156 3623 5973 3119 5330 4955 4583 3271 5624 6882 * * 38 25 5879 * 603 1550 * 0 6107 1714 1248 G 39 5416 * 2501 5259 * 836 4928 * 4838 6582 * 4127 * 6670 6650 4638 * * 5785 * 39 38 5253 * 1000 1000 * 0 6107 1585 1248 Q 40 4275 * 4667 2498 5692 5129 4849 3288 3752 5460 6877 3531 * 3747 5357 3718 3927 3570 * 5049 40 29 5660 * 1000 1000 0 * 6107 1670 1248 K 41 5326 5785 3053 2535 5467 5040 5943 5264 2420 6298 6321 6347 3157 5210 4540 5342 3749 4188 * 6921 41 26 5810 * 1000 1000 * * 6112 1000 0 L 42 6817 6377 * 3610 * 5077 4260 4525 2780 3897 4959 4712 * 3056 2182 7025 3732 3933 * * 42 16 6523 * 1000 1000 * * 6112 1000 0 T 43 5930 * 2051 1407 * * * 6753 3026 4074 7008 5288 6531 6557 5170 4648 5705 5592 * 6467 43 89 4067 * 1507 625 * * 6112 2438 0 F 44 * 3444 5270 * 2688 * 5529 * * 5178 4610 * * * * * 6088 5759 * 728 44 0 * * * * * * 6112 0 0 V 45 4885 6697 * * 4127 * * 3505 * 2227 4734 * * * * * 6234 3371 * 1151 45 0 * * * * * * 6112 0 0 T 46 4913 * 5730 3218 6529 * * 2803 4133 2985 6292 6684 * 3649 6610 5139 4140 1872 6718 5448 46 0 * * * * * * 6041 0 0 M 47 * * * * 5477 * * 1893 6292 931 4562 * * 6065 5287 * * 3501 * * 47 93 4001 * 0 * * * 6041 2669 0 R 48 4878 * 6392 1795 * * 5095 6610 3002 4823 * 4606 3403 3308 3706 4009 4848 5318 * 5000 48 54 4777 * 0 * * * 6041 2027 0 R 49 * 6255 * * 2630 * * 4301 * 3586 4315 * 3017 * 4805 * * 2302 * 1841 49 94 6740 4221 0 * * * 6042 1000 0 E 50 2205 * 6295 3411 5066 * * 3704 3883 3140 * * 3560 4898 4803 4882 * 3602 6295 3245 50 169 4628 3837 0 * 329 2293 5991 2004 2591 E 51 3632 * 3227 2715 4321 2586 4080 7220 3463 5358 6591 4398 * 3544 6782 4113 * 6742 * 4541 51 12 6953 * 0 * 520 1724 6009 1000 2940 D 52 6575 * 2373 2658 * 3312 * * 4307 * 5541 2210 5189 3672 6721 3258 5087 * * * 52 140 4616 4269 735 1325 0 * 6028 2350 1687 G 53 5232 * 1413 3917 * 3294 6462 * 2665 * * 2821 * 6136 6515 3820 5432 * * * 53 232 5705 2951 0 * 0 * 6021 1624 2343 A 54 2937 6014 6391 4358 * 3429 6565 4024 5542 2790 2077 * * * * 2562 4963 5385 * * 54 18 6303 * 2000 415 0 * 6025 1000 3078 V 55 5145 * * 5606 5902 * 5731 3917 1668 6794 5915 4586 * 5003 2758 5453 2182 4457 * * 55 0 * * * * * * 6045 0 0 V 56 5010 * * * 6179 6082 * 1507 * 1522 5490 * * * * * 5536 2346 * * 56 0 * * * * * * 6045 0 0 M 57 * 5486 * 4995 3171 * * 6274 4380 3123 2654 * * * 4472 4303 6548 6172 6233 1446 57 0 * * * * * * 6036 0 0 V 58 4740 6367 * * 6463 * * 2044 * 3052 * * * * * * 5092 897 * 6692 58 0 * * * * * * 6036 0 0 P 59 5725 * * * * * * * 5730 * * * 56 * * * * * * * 59 0 * * * * * * 6036 0 0 E 60 4033 * * 4531 5509 * * 2996 * 4255 * * * * 6644 5212 3661 808 * 6837 60 0 * * * * * * 6051 0 0 G 61 3368 * 1601 1992 * 3714 * * 6473 6078 * 3723 6545 * * 3488 5024 6199 * * 61 92 * 4018 * * * * 6050 0 0 K 62 6065 * 4576 6430 * 3965 5341 * 2468 6003 * 2099 * 2474 2796 3487 * * * * 62 184 6187 3234 0 * 509 1751 5977 1000 2224 V 63 1869 * * 5083 6114 5691 * 2463 5944 2954 3791 * 5346 * 5391 6271 * 2302 * * 63 0 * * * * 0 * 5948 0 2863 L 64 2835 * 2119 2635 * 3792 3388 * 4688 6144 6433 3873 * 5463 4678 4012 4897 * * 6507 64 0 * * * * * * 6049 0 0 A 65 4137 5530 5081 3390 * 6110 * * 2120 2873 6087 5327 * 3851 3176 3320 4346 4423 * * 65 40 * 5208 * * * * 6015 0 0 I 66 5297 * * * 4670 * * 1343 6033 3249 * 5675 * * * 4535 3230 2100 * 5777 66 121 * 3631 * * 0 * 5999 0 1512 G 67 * 5980 4949 5146 * 902 * 5584 4172 * * 4029 5123 5418 3731 3896 * 5101 * 5199 67 174 4876 3647 0 * 1873 460 5479 1471 2407 V 68 * * * * 4878 * * 1620 * 2052 1774 * * * * * * 3223 * * 68 0 * * * * 0 * 5260 0 2703 R 69 * * * * * * * * * * * * * 4466 67 * * * * * 69 0 * * * * * * 5538 0 0 K 70 4659 * 6082 * * 5712 5207 * 1728 5495 5893 3135 2846 * 3160 3963 4048 * * 3854 70 0 * * * * * * 5533 0 0 V 71 4170 * * * 5485 * * 1988 * 2057 * * * * * * * 1445 * 4000 71 0 * * * * * * 5533 0 0 A 72 2956 * * * * 5732 * 1897 * 2535 3326 5874 * * * 3315 * 2517 * 5697 72 0 * * * * * * 5529 0 0 S 73 5009 * 2502 4759 * 3273 * * * * * 3161 * * * 1556 2320 * * * 73 0 * * * * * * 5481 0 0 A 74 2993 * 4848 2954 * 5223 * 4971 2045 * * 4816 5145 4500 3148 3480 5225 4414 * 5284 74 0 * * * * * * 5380 0 0 E 75 * * 1881 696 * * * * 4246 * * * * 4093 * * * * * * 75 0 * * 0 * * * 5231 0 0 //