HHsearch 1.5 NAME c2lsyA_ FAM FILE c2lsyA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2lsyA_.a3m DATE Sat Jun 30 13:35:45 2012 LENG 95 match states, 95 columns in multiple alignment FILT 34 out of 38 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.1 EVD 0.3949 -0.8978 SEQ >ss_dssp CCBTTBCSHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHHHHHHHHHTSSCCSCC >sa_dssp DEBDEAEEDECBCEEADDCADEDDEBEEECCDDABDAACDBAEEEDCEBACDBACBADEAAEDBEDEDADEABEDACDCABECADEDDEEDCECE >ss_pred CCCCHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >ss_conf 95202140999999999998404689976999999999996101069999999999999971124468999999999999999999838833369 >Consensus xxxxgxxxlxevkxxlxxWxxsxxxPxxxDVxxlxxylxxlvxxrxlekxxxllkxlxrLxxxxxxxxWxxAyxxIxxxVQxxmxxxyGxxLxlx >c2lsyA_ GNLAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQTYGSTLKVT >UniRef50_UPI0000DB76DA(744-829:844) PREDICTED: similar to Rev1 CG12189-PA n=1 Tax=Apis mellifera RepID=UPI0000DB76DA E=2e-21 s/c=1.20 id=29% cov=92% --------LKQVKLQIQKWIANSKVVNEIDFLSIATFLSMLPEKKRIEDLHILLKTMHRCMTKTGNCIWHGTYRKIVKYVQHYMQIEYNSNLMV- >UniRef50_UPI000192707B(753-840:850) PREDICTED: similar to predicted protein, partial n=1 Tax=Hydra magnipapillata RepID=UPI000192707B E=1e-18 s/c=1.07 id=26% cov=92% --------ISEIKAYLQNWILSGVEPNPKDVEAIKSYNHLLIKSRNMETLQLLLLYFKRLVSKTTTlSYWKSIFNEVLSDTQKFMKLKYNGRLNI- >UniRef50_UPI000180D06C(294-393:404) PREDICTED: similar to REV1-like n=1 Tax=Ciona intestinalis RepID=UPI000180D06C E=1e-13 s/c=0.77 id=26% cov=94% -SLGGATTTAEVRDVIRKWTRaySQEFPLDSDIEDIINYLCTLVNHvRNLESTELILRTIRRyigfVIEQNENvemqTAWLVAYSQILCAVNKKVENLYG ------ >UniRef50_B4QLD4(831-928:940) GD13564 n=1 Tax=Drosophila simulans RepID=B4QLD4_DROSI E=7e-23 s/c=1.10 id=29% cov=92% ------TEVPEVpellmgdkyKDLLNTWVSREEAPSPNDVDLFVKQVSRMIRNDQLDHMCDVMKYLCRIinMKRSCSCCWHMAYKHIEEFIQEQMLTIEG YNL--- >UniRef50_C9SHT7(466-556:563) DNA polymerase IV n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SHT7_VERA1 E=2e-16 s/c=0.95 id=23% cov=87% ----GVTAVADVKDMLEAWHgqSKEEGPHKADVQVLATYLGRVVlEERNMNKAVQLVKWVDFLISTDpgngpGKRGWQKALAGVKHEVQEAVKQ------ --- >UniRef50_A8PR16(1103-1194:1199) Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PR16_MALGO E=2e-15 s/c=0.91 id=15% cov=93% --------LDRMRAQITQWYETCahDAPRRGDLQRLCAVLKRCVDAYALDKVRGVLLWWRALLRvRRAGDAWLAACRDTVDALQAYVTHVHGGPMDLS >UniRef50_B6K5D4(913-998:1006) DNA polymerase IV n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K5D4_SCHJY E=6e-15 s/c=0.95 id=25% cov=84% ----GAQTMTELRRLVCHWYKHCiRGPHQQDVDYFIKYVCKLITvEKNLAKAHMILHWFRHIVQPSQ--RWSKALEKVILAVQTECL---------- >UniRef50_Q4PCE3(1379-1483:1488) Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4PCE3_USTMA E=5e-11 s/c=0.66 id=25% cov=84% ----------DVEILLSQWISafARKGPREGDVNRIATYLADVVRTasvtrvEDTQKASSLLGFIqerldevqYKIDDGFASEEWETAKRKIRDAVQAKS REVFG------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 N 2 * * * * * * * * * * * 644 * * * 1475 * * * * 2 0 * * * * * * 1991 0 0 L 3 * * * * 2243 * * * * 342 * * * * * * * * * * 3 0 * * * * * * 2419 0 0 A 4 1729 1681 * * * 2379 * * * * * * * * * 2363 * * * * 4 0 * * * * * * 2849 0 0 G 5 * * * * * 0 * * * * * * * * * * * * * * 5 0 * * * * * * 3313 0 0 A 6 656 * * * * * * * * 3046 * * * * 3150 * * 2926 * * 6 0 * * * * * * 3313 0 0 V 7 * 4043 * * * * 4095 * * * * * * 3599 * * 738 2331 * * 7 0 * * * * * * 3672 0 0 E 8 3919 * 4157 1095 * * * * * * * 3921 * * * 2938 2230 * * * 8 0 * * * * * * 3827 0 0 F 9 * * * * 4020 * * 2991 * 849 3616 * * * * * 3306 3742 * * 9 0 * * * * * * 4675 0 0 N 10 3906 * 3296 3493 * 5215 * * 3883 * * 4015 1816 * * 2290 3357 * * * 10 0 * * * * * * 5149 0 0 D 11 * * 1748 1283 * * * * 4807 * * 3557 * 3075 4265 * * * * * 11 0 * * * * * * 5255 0 0 V 12 * * * * * * * 3219 * 1627 4320 * * * * * * 1313 3771 4533 12 85 4127 * 2901 207 * * 5271 1138 0 K 13 * * * 4657 * * * * 1063 * * * * 3871 1275 * * * * * 13 0 * * * * * * 5348 0 0 T 14 3320 * 2433 2755 * 5399 * 4103 3811 4187 4730 * 4238 5013 3466 4602 3248 * * * 14 0 * * * * * * 5348 0 0 L 15 3415 * * 5340 * * * 3120 * 1568 2370 * * 3277 * * 5180 3788 * 4938 15 0 * * * * * * 5348 0 0 L 16 5340 * * * 3917 * * 2480 * 806 4305 * * * * * * 3221 * * 16 0 * * * * * * 5348 0 0 R 17 3218 5063 4687 3375 * 4295 * * 5179 * * 4266 * 2665 2882 3206 2814 * * 4238 17 0 * * * * * * 5348 0 0 E 18 2848 * 3340 2013 * * 5063 5180 2586 4943 * 3881 * 3508 * 5681 3993 5646 * * 18 0 * * * * * * 5348 0 0 W 19 * * * * * * * * * * * * * * * * * * 0 * 19 0 * * * * * * 5348 0 0 I 20 * * * * 4398 * 3348 1984 * 4238 * * * * * * 3998 1907 * 2189 20 91 4026 * 1000 1000 * * 5348 1631 0 T 21 3652 4730 5007 3096 * 4687 5179 * 5063 4938 * 3433 * 4238 3395 2351 2777 5430 * * 21 216 2844 * 1000 1000 * * 5348 2499 0 T 22 3190 * 4943 5180 * * 5063 * 3597 * * 2929 * * 3797 1648 2355 * * * 22 175 3134 * 1000 1000 * * 5348 1987 0 I 23 4031 2869 * 1869 * 3958 * 4119 * * * * * 4067 2973 3294 3644 * * 4742 23 167 3194 * 789 1248 * * 5348 2284 0 S 24 4206 * 3087 1591 * * * * 3403 * * * 5179 3409 3894 4010 4273 3337 * * 24 127 3569 * 938 1065 * * 5348 2087 0 D 25 2955 * 5677 2838 4836 1441 * 4828 4238 * * * 4687 * * * * 2836 * 4602 25 0 * * * * * * 5348 0 0 P 26 * * * 4730 * * * * * * * * 140 * * * * 4187 * * 26 55 4730 * 0 * * * 5348 1000 0 M 27 * * 4238 4076 3650 * 2724 * 4016 4836 4119 2714 * 5013 2997 3535 5007 * * 3712 27 0 * * * * * * 5348 0 0 E 28 * * 3523 1470 * * * 5399 5536 4166 * 3039 2407 5063 3428 * * 5800 * * 28 0 * * * * * * 5348 0 0 E 29 4590 * 5180 1909 * 3508 5399 4187 3836 * 5654 4266 * 5063 4943 4836 2784 5430 * 3466 29 0 * * * * * * 5348 0 0 D 30 * * 0 * * * * * * * * * * * * * * * * * 30 0 * * * * * * 5348 0 0 I 31 * * * * 4187 * * 2411 * 4373 * * * * * * 4943 564 * * 31 0 * * * * * * 5348 0 0 L 32 4439 * 2867 1851 * * * * * 2247 * 3343 * 3311 * * 3705 4238 * * 32 0 * * * * * * 5348 0 0 Q 33 2324 * 4836 * * * * 3353 * 2811 4602 * * 3553 3508 3749 5624 3413 * 3034 33 0 * * * * * * 5348 0 0 V 34 * * * * 2772 * * 1934 * 1205 3993 * * * * * * 4119 4730 * 34 0 * * * * * * 5348 0 0 V 35 1609 4373 * 3276 * 3437 4828 3945 4938 5233 5007 4602 * * * * 3537 3177 * * 35 0 * * * * * * 5348 0 0 K 36 4373 * 5013 2748 * 4278 * 5340 2101 5800 * 4091 * 3937 3899 3253 2751 * * * 36 0 * * * * * * 5348 0 0 Y 37 * * * * 4187 * 4238 * 4602 4730 * 3853 * 3519 * * * 4373 * 716 37 0 * * * * * * 5348 0 0 C 38 4979 4119 * * 4238 4737 * 4828 * 796 * 4938 * * * * * 2502 * * 38 0 * * * * * * 5348 0 0 T 39 4068 3014 * 5007 * 4077 4053 * 2568 3219 * * * * 2941 2482 4119 * * 5430 39 0 * * * * * * 5348 0 0 D 40 4742 * 2783 3359 * 4730 * * 3546 4938 4187 * * 3633 1464 5013 4836 * * * 40 0 * * * * * * 5348 0 0 L 41 * 3656 * * * * * * * 1272 4266 * * * * 4238 4742 1457 * * 41 28 5681 * 0 * * * 5348 1000 0 I 42 3409 * * * * * * 1419 * 4737 * * 4187 * * * * 1186 * * 42 366 2157 * 0 * * * 5348 2543 0 E 43 * * 2914 1694 * * * 4238 3405 5179 * 3356 * 3665 3942 3866 3777 * * * 43 109 3777 * 0 * * * 5348 1866 0 E 44 3582 * 3278 1419 * 3856 4836 * 4187 * * 4266 * * * 3253 3016 * * * 44 223 3157 5013 1392 692 * * 5348 2289 0 K 45 * * 3447 4624 * * * * 1420 * * * * * 1310 * * * * 3465 45 0 * * * * 0 * 5319 0 1000 D 46 4373 * 1477 * * * * * * * * 1565 * 3424 3530 4737 4742 * * * 46 55 4742 * 2322 322 * * 5348 1000 0 L 47 * * * * * * * 2769 * 888 2659 * * * * * 4657 3123 * * 47 0 * * * * * * 5348 0 0 E 48 3376 * 1992 1178 * 3946 3902 * * * * 5536 * 4657 * 5835 * * * * 48 0 * * * * * * 5348 0 0 K 49 * * 4187 4979 * * 4266 * 1000 * * 5007 * 4737 2788 4836 4053 * 4238 * 49 0 * * * * * * 5348 0 0 L 50 1876 * * * * 4504 * 3747 * 1663 5200 * * * * * 4533 2166 * * 50 0 * * * * * * 5523 0 0 D 51 * 4202 3090 4533 * * 3043 4504 * * * * 4247 3297 2673 4473 * 3481 4573 2923 51 0 * * * * * * 5523 0 0 L 52 4504 * 3419 4841 * 2941 * 4307 * 1591 3849 * * 4869 * 3305 4247 4121 * * 52 0 * * * * * * 5523 0 0 V 53 3517 * * * 4797 * * 2835 * 1303 4911 * * * * * * 1747 * * 53 0 * * * * * * 5523 0 0 I 54 * 4573 * * * * * 3066 * 1185 2151 * * * * * * 2527 * * 54 0 * * * * * * 5523 0 0 K 55 4982 * * * * 4473 4790 4826 806 3520 * 4247 * * 2833 * * * * * 55 0 * * * * * * 5523 0 0 Y 56 * * * * 2547 * 4673 * * 3694 * * * * * * 3416 * 1489 1930 56 0 * * * * * * 5523 0 0 M 57 * * * * 2770 * * 3030 * 1125 3098 * * * * * * 4869 3042 * 57 69 4414 * 3000 193 * * 5523 1000 0 K 58 * 2924 3133 4017 4881 5315 3506 * 2727 4325 * * * * 2545 * * * * 2530 58 59 4650 * 4392 70 * * 5531 1000 0 R 59 4246 * * * 4800 * 4734 * 4427 * * * * 4850 778 * * 4325 2648 * 59 137 4406 4519 2000 415 * * 5531 1000 0 L 60 * 4253 * * * * * 2478 * 681 * 4169 * * * * 4666 4348 * * 60 86 4114 * 1000 1000 * 0 5452 1138 1000 M 61 * 4818 4375 * 4169 * * 2233 4788 2816 2462 4809 * * * * * 1984 * * 61 201 2945 * 2209 352 0 * 5452 2267 1000 Q 62 4219 * 3112 3762 * * * * 2093 * * 4880 * 3044 2865 3160 3080 * * * 62 78 4246 * 0 * * * 5531 1000 0 Q 63 4880 * 4828 3383 * 3194 * * 2270 * * * 4734 2569 2103 * 3652 * * * 63 0 * * * * * * 5531 0 0 S 64 * * 4800 4064 3024 * * * 3717 3721 4219 4406 * * 3529 1886 2968 4519 * * 64 277 3047 4219 3438 140 * * 5531 2101 0 V 65 1964 3920 4786 3521 * 1927 * * * * * * * 4676 3610 4240 4597 3717 * * 65 58 * 4676 * * 0 * 5363 0 1000 E 66 * * 4618 3839 * 3235 3509 * 2827 * * 2119 * * 5234 2179 3700 * * * 66 276 2523 * 1373 704 * 0 5488 2662 1000 S 67 4461 1658 4189 2610 * 4559 * * 2806 * * * * * 4724 2768 4349 * * * 67 0 * * * * 0 * 5488 0 1000 V 68 2370 3194 4781 3534 4765 4034 * 4286 4709 4828 * * 4850 4786 3806 3870 4880 3886 * 4653 68 0 * * * * * * 5531 0 0 W 69 * * * * * * * * * * * * * * * * * * 0 * 69 0 * * * * * * 5531 0 0 N 70 * * * 2476 * * 1702 * 4653 3324 * 5419 * 3793 3288 3611 * * 4325 4519 70 0 * * * * * * 5531 0 0 M 71 2849 * 4709 4274 * 4286 * * 2296 4781 2888 4828 * 4519 3822 3762 4427 3736 * * 71 0 * * * * * * 5531 0 0 A 72 364 * * * * * * 3584 * * * * * * * * 2843 * * * 72 0 * * * * * * 5531 0 0 F 73 * 4246 * * 2082 * * 4850 4427 3767 * * * * * * * 3037 * 1202 73 0 * * * * * * 5531 0 0 D 74 4800 4765 3289 2573 * * 4219 * 3390 * 4709 3716 * 4579 2319 4406 4519 4047 * * 74 0 * * * * * * 5531 0 0 F 75 5235 * 3508 3762 3886 4034 4170 * 1933 * * * * 3365 3833 3032 * 4650 * 4781 75 0 * * * * * * 5531 0 0 I 76 * * * * * * * 615 * * * * * * * * 4246 1765 * * 76 0 * * * * * * 5531 0 0 L 77 * * * 2895 * * * 2762 2388 2028 * * * * 4421 * * 2088 * * 77 0 * * * * * * 5546 0 0 D 78 * 4385 1680 2195 * * 4715 * 4247 4698 4748 3778 * * 3731 3225 * * * * 78 0 * * * * * * 5546 0 0 N 79 1990 * 3672 4715 5147 * * * 4752 4195 * 3871 4723 * 3391 3274 3675 3719 * 4247 79 0 * * * * * * 5546 0 0 V 80 * * * * * * * 2241 * 3366 4325 * * * * * 4601 736 * * 80 0 * * * * * * 5546 0 0 Q 81 * * 4325 * * * * * * * * 4385 * 218 * * 4564 * * * 81 0 * * * * * * 5546 0 0 V 82 2943 * 4459 1773 * 4796 3422 * 3489 * * 5141 * 4195 * * 3698 2703 * * 82 0 * * * * * * 5546 0 0 V 83 2824 * * 3145 4601 4195 * 4459 3403 4748 * * * 2888 * 4564 * 2411 * 3219 83 0 * * * * * * 5546 0 0 L 84 4325 3746 * * * * * 4564 * 3010 1402 * * * * 4421 * 1816 * * 84 0 * * * * * * 5546 0 0 Q 85 4622 * * 3564 * * * * 2578 2006 4599 * * 3028 2865 4444 4148 4187 * * 85 0 * * * * * * 5544 0 0 Q 86 3350 * * 2188 * * 4104 4210 * 4524 * 3474 * 1794 * 4411 3299 * * * 86 0 * * * * * * 5473 0 0 T 87 4163 * * 4017 * * * 2146 2571 3303 4343 * * 4225 4000 * 3527 2891 * * 87 0 * * * * * * 5050 0 0 Y 88 * * * 2989 2485 * 3755 * * * * * * * * * 4330 * * 807 88 163 3226 * 0 * * * 5050 1608 0 G 89 * * * * * 356 * * * * * 3125 * * 4313 4223 * * * * 89 0 * * * * * * 5050 0 0 S 90 * 4071 * * 4026 1814 3032 * * * * * * * 4240 1837 * * * 2840 90 0 * * * * * * 4817 0 0 T 91 * 3762 * * 3945 * * * 3136 * 4100 2539 3579 * 2547 3360 2599 * * * 91 0 * * * * * * 4817 0 0 L 92 * * * * * * * * * 337 2264 * * * * * * * * * 92 0 * * * * * * 4817 0 0 K 93 2827 * 3296 * * * * * 1233 3577 3633 3706 * * * 3460 * * * * 93 0 * * * * * * 4515 0 0 V 94 * * * * * * * 2316 * 1212 * * * * * * * 1444 * * 94 0 * * * * * * 4515 0 0 T 95 * * * * * * * * * * * * * * * 1084 921 * * * 95 0 * * 0 * * * 2249 0 0 //