HHsearch 1.5 NAME c2lsjA_ FAM FILE c2lsjA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2lsjA_.a3m DATE Sat Jun 23 13:10:39 2012 LENG 97 match states, 97 columns in multiple alignment FILT 34 out of 38 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.1 EVD 0.3775 -2.0552 SEQ >ss_dssp CCCCBTTBCSHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCTHHHHHHHHHHHHHHHHHHTTTSCCCCCC >sa_dssp ECACBEEAEECEDACDCADDBAEEDCEBEEEDCDEABEAABCAAEDECDECADEAADBABDAADEBEDEDADEBBECABEDABECBDEDDDEDBEDE >ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >ss_conf 9862033688899999999998502589977999999999997303379999999999999980211068999999999999999999848734369 >Consensus xxpxxxgxtxlxevkxxlxxWxxsxxxPxxxDVxxlxxylxxlvxxrxlekxxxllkxlxrLixxxxxxxWxxAyxxIxxxVQxxmxxxyGxxLxvx >c2lsjA_ AAPNLAGAVEFSDVKTLLKEWITTISDPMEEDILQVVRYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQTYGSTLKVT >UniRef50_B6K5D4(913-998:1006) DNA polymerase IV n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K5D4_SCHJY E=4e-17 s/c=1.04 id=23% cov=86% ---SFQGAQTMTELRRLVCHWYKHCiRGPHQQDVDYFIKYVCKLITvEKNLAKAHMILHWFRHIVQPSQ--RWSKALEKVILAVQTECL---------- >UniRef50_C9SHT7(466-556:563) DNA polymerase IV n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9SHT7_VERA1 E=2e-15 s/c=0.92 id=23% cov=86% ------GVTAVADVKDMLEAWHgqSKEEGPHKADVQVLATYLGRVVlEERNMNKAVQLVKWVDFLISTDpgngpGKRGWQKALAGVKHEVQEAVKQ---- ----- >UniRef50_Q4PCE3(1378-1483:1488) Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4PCE3_USTMA E=8e-15 s/c=0.77 id=22% cov=94% --PTIRGLSHPRDVEILLSQWISafARKGPREGDVNRIATYLADVVRTASVTRVEDtqkassLLGFIqerldevqYKIDDGFASEEWETAKRKIRDAVQA KSREVFGG----- >UniRef50_A8PR16(1103-1194:1199) Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PR16_MALGO E=0.0002 s/c=0.51 id=15% cov=91% ----------LDRMRAQITQWYETCahDAPRRGDLQRLCAVLKRCVDAYALDKVRGVLLWWRALLRvRRAGDAWLAACRDTVDALQAYVTHVHGGPMDLS >UniRef50_UPI0000DB76DA(744-829:844) PREDICTED: similar to Rev1 CG12189-PA n=1 Tax=Apis mellifera RepID=UPI0000DB76DA E=3e-21 s/c=1.20 id=29% cov=90% ----------LKQVKLQIQKWIANSKVVNEIDFLSIATFLSMLPEKKRIEDLHILLKTMHRCMTKTGNCIWHGTYRKIVKYVQHYMQIEYNSNLMV- >UniRef50_UPI000192707B(753-840:850) PREDICTED: similar to predicted protein, partial n=1 Tax=Hydra magnipapillata RepID=UPI000192707B E=6e-18 s/c=1.04 id=28% cov=90% ----------ISEIKAYLQNWILSGVEPNPKDVEAIKSYNHLLIKSRNMETLQLLLLYFKRLVSKTTTlSYWKSIFNEVLSDTQKFMKLKYNGRLNI- >UniRef50_UPI000180D06C(291-393:404) PREDICTED: similar to REV1-like n=1 Tax=Ciona intestinalis RepID=UPI000180D06C E=1e-16 s/c=0.85 id=24% cov=96% SKPSLGGATTTAEVRDVIRKWTRaySQEFPLDSDIEDIINYLCTLVNHvRNLESTELILRTIRRYIgfvieqneNVEMQTAWLVAYSQILCAVNKKVENL YGG----- >UniRef50_B4QLD4(831-928:940) GD13564 n=1 Tax=Drosophila simulans RepID=B4QLD4_DROSI E=1e-23 s/c=1.12 id=28% cov=90% --------TEVPEVpellmgdkyKDLLNTWVSREEAPSPNDVDLFVKQVSRMIRNDQLDHMCDVMKYLCRIinMKRSCSCCWHMAYKHIEEFIQEQMLTI EGYNL--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 1000 * * * * * * * * * * * * * * 1000 * * * * 1 0 * * * * * * 1695 0 0 A 2 800 * * * * * * * 1232 * * * * * * * * * * * 2 0 * * * * * * 1768 0 0 P 3 * * * * * * * * * * * * 0 * * * * * * * 3 0 * * * * * * 2710 0 0 N 4 * * * 2779 * * * * * * * 2293 * * * 1712 1536 * * * 4 0 * * * * * * 3289 0 0 L 5 * * * * 1748 * * 2473 * 938 * * * * * * * * * * 5 0 * * * * * * 3289 0 0 A 6 2021 1899 * * * 2706 * * * * * * * 2718 2473 * * * * * 6 0 * * * * * * 3289 0 0 G 7 * * * * * 0 * * * * * * * * * * * * * * 7 0 * * * * * * 3675 0 0 A 8 842 * * * * * * * * 2102 * * * * 3369 * * 3152 * * 8 0 * * * * * * 3675 0 0 V 9 * 4330 * * * * 4311 * * * * * * 3860 * 3276 682 3258 * * 9 0 * * * * * * 4013 0 0 E 10 4317 * 3267 1444 * 4317 3492 * * * * 4233 * * * 3285 2446 * * * 10 0 * * * * * * 4112 0 0 F 11 4743 * * * 4149 * * 2986 * 967 4693 * 4241 * * * 3427 3571 * * 11 0 * * * * * * 4813 0 0 S 12 3431 * 3454 3583 * 5354 * * 3950 * * 4655 2027 * 4474 2175 3444 * * * 12 0 * * * * * * 5247 0 0 D 13 5077 * 1794 1236 * * * * 4914 * * 4333 * 3020 4283 * * * * * 13 0 * * * * * * 5247 0 0 V 14 * * * * * * * 3191 * 1753 4329 * * * * * * 1219 3862 4453 14 58 4655 * 3170 170 * * 5330 1000 0 K 15 * * * 4669 * * * * 1062 * * * * 3861 1277 * * * * * 15 0 * * * * * * 5396 0 0 T 16 3350 * 2446 2782 * 5384 * 4669 3409 4202 4691 * 4253 4997 3443 4643 3225 * * * 16 0 * * * * * * 5396 0 0 L 17 3394 * * 5321 * * * 3085 * 1575 2386 * * 3331 * * 5147 3764 * 4891 17 0 * * * * * * 5396 0 0 L 18 5321 * * * 3886 * * 2494 * 809 4219 * * * * * * 3247 * * 18 0 * * * * * * 5396 0 0 K 19 3178 5040 4651 3412 * 4279 * * 4440 * * 4256 * 2687 3075 3201 2834 * * 4253 19 0 * * * * * * 5396 0 0 E 20 2822 * 3351 2004 * * 5040 5147 2584 5130 * 3836 * 3568 * 5675 3984 5628 * * 20 0 * * * * * * 5396 0 0 W 21 * * * * * * * * * * * * * * * * * * 0 * 21 0 * * * * * * 5396 0 0 I 22 * * * * 4367 * 3394 1993 * 4253 * * * * * * 3993 1884 * 2190 22 138 3458 * 1000 1000 * * 5396 1830 0 T 23 3656 4691 4873 3127 * 4651 5226 * 5040 4891 * 3457 * 4253 3959 2354 2512 5381 * * 23 219 2827 * 1000 1000 * * 5396 2593 0 T 24 3143 * * 5147 * * 5040 * 3576 * * 2935 * * 3785 1642 2380 5130 * * 24 125 3594 * 1000 1000 * * 5396 1560 0 I 25 4098 2876 * 1863 * 3925 * 4114 * * * * * 4033 3008 3291 3611 * * 4736 25 113 3729 * 643 1476 * * 5396 1706 0 S 26 4176 * 3109 1584 * * * * 3417 4873 * * 5226 3435 3880 4003 4384 3836 * * 26 129 3548 * 979 1021 * * 5396 2131 0 D 27 2796 * 4225 2850 4793 1566 * 4782 4253 * * * 5502 * * * * 2846 * 4643 27 50 4873 * 1000 1000 * * 5396 1000 0 P 28 * * * 4691 * * * * * * * * 141 * * * * 4202 * * 28 57 4691 * 0 * * * 5396 1000 0 M 29 * * 4253 4086 3638 * 2741 * 3988 4793 4114 2718 * 4997 3037 3500 4873 * * 3751 29 0 * * * * * * 5396 0 0 E 30 * * 3469 1476 * * * 5384 5509 4250 * 3029 2391 5040 3470 * * 5794 * * 30 0 * * * * * * 5396 0 0 E 31 4567 * 5147 1899 * 3568 5384 4202 3811 * 5627 4256 * 5040 5130 4793 2745 5381 * 3524 31 0 * * * * * * 5396 0 0 D 32 * * 0 * * * * * * * * * * * * * * * * * 32 0 * * * * * * 5396 0 0 I 33 * * * * 4202 * * 2381 * 4473 * * * * * * 5130 556 * * 33 0 * * * * * * 5396 0 0 L 34 4443 * 2845 1841 * * * * * 2278 * 3328 * 3347 * * 3658 4253 * * 34 0 * * * * * * 5396 0 0 Q 35 2300 * 4793 * * * * 3325 * 2844 4643 * * 3565 3568 3758 5502 3458 * 2989 35 0 * * * * * * 5396 0 0 V 36 * * * * 2764 * * 1931 * 1219 3953 * * * * * * 4114 4691 * 36 0 * * * * * * 5396 0 0 V 37 1615 4473 * 3308 * 3438 4782 3911 4891 5229 4873 4643 * * * * 3511 3182 * * 37 0 * * * * * * 5396 0 0 R 38 4473 * 4997 2764 * 4255 * 5321 2210 5794 * 4059 * 3934 3517 3213 2794 * * * 38 0 * * * * * * 5396 0 0 Y 39 * * * * 4202 * 4253 * 4643 4691 * 3908 * 3495 * * * 4473 * 703 39 0 * * * * * * 5396 0 0 C 40 4959 4114 * * 4253 4859 * 4782 * 806 * 4891 * * * * * 2464 * * 40 0 * * * * * * 5396 0 0 T 41 4071 2980 * 4873 * 4043 4049 * 2579 3314 * * * * 2934 2490 4114 * * 5381 41 0 * * * * * * 5396 0 0 D 42 4736 * 2771 3418 * 4691 * * 3592 4891 4202 * * 3659 1449 4997 4793 * * * 42 0 * * * * * * 5396 0 0 L 43 * 3659 * * * * * * * 1275 4256 * * * * 4253 4736 1453 * * 43 0 * * * * * * 5396 0 0 I 44 3435 * * * * * * 1338 * 4859 * * 4202 * * * * 1240 * * 44 402 2041 * 0 * * * 5396 2607 0 E 45 * * 2939 1702 * * * 4253 3370 5226 * 3329 * 3667 3944 3866 3744 * * * 45 112 3744 * 0 * * * 5396 1919 0 E 46 3619 * 3328 1412 * 3843 4793 * 4202 * * 4256 * * * 3213 3023 * * * 46 155 3826 4997 0 * * * 5396 1681 0 K 47 4628 * 3424 * * * * * 1417 * * * * * 1306 * * * * 3514 47 0 * * * * 0 * 5366 0 1000 D 48 4473 * 1630 * * * * * * * * 1549 * 3437 3531 3761 4736 * * * 48 55 4736 * 2322 322 * * 5396 1000 0 L 49 * * * * * * * 2770 * 896 2643 * * * * * * 2681 * * 49 0 * * * * * * 5396 0 0 E 50 3345 * 2024 1170 * 3967 3868 * * * * 5509 * * * 5819 4669 * * * 50 0 * * * * * * 5396 0 0 K 51 * * 4202 4959 * * 4256 * 1123 * * 4873 * 4859 2438 4793 4049 * 4253 * 51 0 * * * * * * 5396 0 0 L 52 2131 * * * * 4509 * 3783 * 1655 5191 * * * * * 4470 1915 * * 52 0 * * * * * * 5543 0 0 D 53 * 4206 3113 3497 * * 3024 4509 * * * * 4227 3293 2670 * * 3485 4507 2956 53 0 * * * * * * 5543 0 0 L 54 4509 * 2893 4837 * 2953 * 4289 * 1580 3846 * * 4848 * 4136 4227 4129 * * 54 64 4526 * 2585 263 * * 5543 1000 0 V 55 3491 * * * 4842 * * 2834 * 1302 4907 * * * * * * 1751 * * 55 0 * * * * * * 5543 0 0 I 56 * 4507 * * * * * 3081 * 1179 2161 * * * * * * 2533 * * 56 0 * * * * * * 5543 0 0 K 57 4994 * * * * 4526 4787 4812 810 3513 * 4227 * * 2818 * * * * * 57 54 4754 * 4392 70 * * 5543 1000 0 Y 58 * * * * 2265 * * * * 3651 * * * * * * 3376 * 1491 1942 58 0 * * * * * * 5543 0 0 M 59 * * * * 2764 * * 2663 * 1247 3086 * * * * * * 4848 3047 * 59 67 4466 * 3000 193 * * 5543 1000 0 K 60 * 3433 3136 4028 4842 5312 3530 * 2696 4323 * * * * 2547 * * * * 2250 60 0 * * * * * * 5565 0 0 R 61 4288 * * * 4773 * 4717 * 4463 * * * * 4839 770 * * 4323 2666 * 61 68 * 4450 * * * * 5565 0 0 L 62 * 4246 * * * * * 2472 * 690 * 4158 * * * * 4647 * * 4287 62 142 3417 * 1594 580 * 0 5469 1762 1000 M 63 * 4869 4407 * 4158 * * 1998 * 2818 2448 4796 * * * * * 1993 * * 63 225 2793 * 2388 306 0 * 5469 2522 1000 Q 64 4212 * 3640 4035 * * * * 2100 * * 3609 * 3031 2877 3697 3065 4854 * * 64 76 4288 * 0 * * * 5565 1000 0 Q 65 4939 * * 2949 * 3229 * * 2271 * * * 4717 3035 2105 * 3602 4341 * * 65 50 4867 * 3000 193 * * 5565 1000 0 S 66 * * 4773 3191 3035 * * * 3235 3727 4212 * * * 3539 2075 2976 4450 * * 66 218 3530 4212 3687 117 * * 5565 1697 0 V 67 1967 3904 4844 4697 * 1935 * * * * 4278 * * 4657 3644 4234 4568 3715 * * 67 58 * 4657 * * 0 * 5394 0 1000 E 68 * * 4708 3829 * 3254 3458 * 2845 * * 2450 * 4280 5230 2191 3713 * * * 68 191 3008 * 990 1010 * 0 5517 2214 1000 S 69 4396 1667 4228 2624 * 4523 * * 2816 * * * * * 4697 2770 4280 * * * 69 0 * * * * 0 * 5517 0 1000 V 70 2349 3188 4765 3596 4830 4017 * 4282 4692 4854 * * 4839 4867 3778 3844 4939 3877 * 4625 70 0 * * * * * * 5565 0 0 W 71 * * * * * * * * * * * * * * * * * * 0 * 71 0 * * * * * * 5565 0 0 N 72 * * * 2484 * * 1712 * 4625 3314 * 5422 * 3819 3290 3595 * * 4323 4450 72 0 * * * * * * 5565 0 0 M 73 2885 * 4692 4268 * 4282 * * 2276 4765 2906 4854 * 4450 3836 3773 4463 3696 * * 73 0 * * * * * * 5565 0 0 A 74 370 * * * * * * 3535 * * * * * * * * 2836 * * * 74 0 * * * * * * 5565 0 0 F 75 * 4288 * * 2066 * * 4839 4463 3744 * * * * * * * 3074 * 1197 75 0 * * * * * * 5565 0 0 D 76 4773 4830 3279 2602 * * 4212 * 3425 * 4692 3693 * 4543 2337 4341 4450 4021 * * 76 0 * * * * * * 5565 0 0 F 77 5226 * 3544 3773 3877 4017 4164 * 1930 * * * * 3332 3855 3014 * 4743 * 4765 77 0 * * * * * * 5565 0 0 I 78 * * * * * * * 613 * * * * * * * * 4288 1761 * * 78 0 * * * * * * 5565 0 0 L 79 * * * 2915 * * * 2767 2397 1989 * * * * 4460 * * 2100 * * 79 0 * * * * * * 5580 0 0 D 80 * 4311 1675 2204 * * 4687 * 4243 4680 4732 3796 * * 3799 3219 * * * * 80 0 * * * * * * 5580 0 0 N 81 1982 * 3650 4687 5130 * * * 4775 4187 * 3862 4789 * 3359 3330 3658 3744 * 4243 81 0 * * * * * * 5580 0 0 V 82 * * * * * * * 2244 * 3373 4323 * * * * * 4573 736 * * 82 0 * * * * * * 5580 0 0 Q 83 * * 4323 * * * * * * * * 4311 * 224 * * 4530 * * * 83 0 * * * * * * 5580 0 0 V 84 2971 * 4395 1788 * 4799 3459 * 3436 * * 5146 * 4187 * * 3681 2690 * * 84 0 * * * * * * 5580 0 0 V 85 2838 * * 3134 4573 4187 * 4395 3384 4732 * * * 2931 * 4530 * 2412 * 3237 85 0 * * * * * * 5580 0 0 L 86 4323 3738 * * * * * 4530 * 3059 1402 * * * * 4460 * 1795 * * 86 0 * * * * * * 5580 0 0 Q 87 4667 * * 3557 * * * * 2561 2004 4686 * * 3019 2873 4381 4185 4178 * * 87 0 * * * * * * 5575 0 0 Q 88 3380 * * 2198 * * 4140 4206 * 4497 * 3436 * 1789 * 4351 3321 * * * 88 0 * * * * * * 5498 0 0 T 89 4194 * * 4001 * * * 2160 2541 3276 4373 * * 4181 3983 * 3508 2947 * * 89 0 * * * * * * 5131 0 0 Y 90 * * * 3021 2509 * 3810 * * * * * * * * * 4304 * * 788 90 82 4181 * 0 * * * 5131 1000 0 G 91 * * * * * 458 * * * * * 3105 * * 4325 3242 * * * * 91 0 * * * * * * 5131 0 0 S 92 * 4325 * * * 1237 3248 * * * * * * * 4373 2006 * * * 3021 92 0 * * * * * * 5131 0 0 T 93 * 3748 * * 2983 * * * 3158 * 4185 3152 3597 * 2533 3341 2595 * * * 93 0 * * * * * * 4829 0 0 L 94 * * * * * * * * * 360 2179 * * * * * * * * * 94 0 * * * * * * 4736 0 0 K 95 2706 * 3203 * * * * * 1409 3440 3522 3614 * * * 3311 * * * * 95 0 * * * * * * 4387 0 0 V 96 * * * * * * * 2203 * 1374 * * * * * * * 1333 * * 96 0 * * * * * * 4387 0 0 T 97 * * * * * * * * * * * * * * * 1081 923 * * * 97 0 * * 0 * * * 2250 0 0 //