HHsearch 1.5 NAME c2lmeB_ FAM FILE c2lmeB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2lmeB_.a3m DATE Wed Jan 9 19:55:08 2013 LENG 105 match states, 105 columns in multiple alignment FILT 108 out of 361 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.2 EVD 0.4511 -0.1851 SEQ >ss_dssp CCSSSCCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSCCSEEEEEEEEEEEETTEEEEEEEEEEEESSSBCCEEEEEEETTTEEEEEEE CCBCC >sa_dssp EDEEEECBDEEEEBBEEDDDECEEEEDECDDDBBCEAACDBBEEDEAEEBECDEBEBDCECEDEECEBEADBDBDCDEEDDAEBCBDADAEEECECEDED EEEEE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCEEEEEEEEEECCCCEEEEEE EEEEC >ss_conf 9113567688998999999899999999999988899999986187657897069999834148851499999986269789999988627986599999 77529 >Consensus gxxxxxxxxxixxnxxxixxlxxxixxxxkxxxxgxAxaxAxaxlpxxxxxgkxxvxagxGxyxgxxAvAvGxxxxxnxxxxxxxxxsxxxxxxxxxgaG vxyxf >c2lmeB_ GDQASWSHPQFEKGAHKFRQLDNRLDKLDTRVDKGLASSAALNSLFQPYGVGKVNFTAGVGGYRSSQALAIGSGYRVNESVALKAGVAYAGSSDVMYNAS FNIEW >UniRef50_UPI0001BC4CD4(118-222:281) cell surface protein n=1 Tax=Fusobacterium sp. D12 RepID=UPI0001BC4CD4 E=0.0003 s/c=0.44 id=20% cov=93% ------NEEEIQDNKKEVVKVERNLEITKQELKNEISHVgslsAALSALhpmtYDESSPNQMMV--GLGHYRNKQAVALGVTHYFNSNMMMTAGFALGEE TRVKTMANLGFTW >UniRef50_D0Z4Y8(409-503:504) Putative inner membrane protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z4Y8_LISDA E=6e-11 s/c=0.72 id=19% cov=90% -EKITFLNNKVDRNTGLIKENTYRINKLE----HGMSLMAAMSNLTQDD------VTMALGYYNGNTALAMGINYALMPNMNVKFSAAADTEfTQTSLGV GIGYSF >UniRef50_C0VKR0(438-534:534) Possible YadA domain-containing protein n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VKR0_9GAMM E=0.0001 s/c=0.49 id=22% cov=86% ----------------RIDHASRRLDDIEKTAYRGVAIALAAQQAVPNIRSGQVALFAGVGHFEGETAGSVGVVTSFiSNRVSLSGAVGFAGGNEVGGRV GLSYSF >UniRef50_Q9F3X6(1194-1299:1299) Hsf n=1 Tax=Pasteurella multocida RepID=Q9F3X6_PASMU E=7e-14 s/c=0.74 id=25% cov=101% GSQLYELQQKIAKSGDNYNILNNRINKVDKDLRAGIAGANAAAGLPQAYIPGKSMVAVAAGTYKGQNAIALGMSrISDNGKVIIKLTGNTNSRGDFGASI GAGYQW >UniRef50_Q0I7C8(352-441:457) Probable hemagglutinin-related n=1 Tax=Synechococcus sp. CC9311 RepID=Q0I7C8_SYNS3 E=2e-06 s/c=0.59 id=23% cov=86% --------PSIRKLESKVNDIERSLKEVDSAVESVGALALAVSAIPNLtTGNKKYGCGLGTGVFGSKWAGAAGCVAKVNQDIWINAAISYTPGTNTDY-- ------ >UniRef50_D1NZH3(245-348:348) Putative outer membrane protein n=2 Tax=Providencia RepID=D1NZH3_9ENTR E=2e-14 s/c=0.77 id=21% cov=91% ---------QFKQINTKFDHLESKINQTARDANAGIAAVAAMTNIPY-TSGTRFSAGLGMGNFKNGKAIAAGAQYQVKQNLNLRSSISWNNSDSAVIGAG VAYGW >UniRef50_C9M5Z9(3478-3568:3641) Hemagglutinin family protein n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M5Z9_9BACT E=0.0002 s/c=0.52 id=19% cov=82% ------------RIARRVDELDSRVDNVGAMAAAFAAVPP-----MAYDETHRTSLGIGYGYYSGKSAVALGLSHYINRDVMVRGGMAI-SGDEKSFQLG ASF-- >UniRef50_A6D3C0(176-285:286) Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6D3C0_9VIBR E=3e-09 s/c=0.57 id=22% cov=100% -DKVNNNTARIDGLEQDMAKMGNKMLDLEDRMDGVVATSHAVTNArPMVQDAGEFAMGVGIGAAGSKQALALGGAYQFNANWSSSMTVNYETAGkrsnsQ VSAGAGVQYRF # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 3525 0 0 D 2 3126 * 982 2613 * 3910 * * * * * * * * * 2747 * * * * 2 0 * * * * * * 4422 0 0 Q 3 3219 * * * * * * * 2697 * 3838 2820 * 1148 * 3727 * * * * 3 0 * * * * * * 4537 0 0 A 4 2331 * * * * * * 2323 * 914 * * * * * * * 3824 * * 4 0 * * * * * * 4620 0 0 S 5 3043 * * 4229 * * 3528 * * * * 3085 * 4284 * 1839 3016 * * 2588 5 0 * * * * * * 4912 0 0 W 6 2702 * * 4237 3996 4361 * 4037 4229 3786 * 2465 * 2857 * * * * 4133 3070 6 0 * * * * * * 4912 0 0 S 7 * * * * * * * 3383 4236 2675 * 3200 * * * 2192 2097 2908 * * 7 0 * * * * * * 5141 0 0 H 8 * * 2499 4208 4574 * 2853 * 4326 * * 2244 * 2182 * * 4433 * * 4035 8 0 * * * * * * 5188 0 0 P 9 2895 * * 2961 * * * * 2629 * * 3487 2929 3736 * 4180 3088 3963 * 4538 9 0 * * * * * * 5360 0 0 Q 10 * * 4658 3072 * * 4360 * 2787 * * 4033 * 1583 3357 3006 * 5018 * * 10 0 * * * * * * 5669 0 0 F 11 * * 5095 * 2390 * * 1513 * 3562 * * * * * * 5015 1812 5089 * 11 0 * * * * * * 5719 0 0 E 12 3113 * 2402 2405 * 4249 * * 4030 * * 2474 * 2993 5041 5120 5166 * * * 12 0 * * * * * * 5849 0 0 K 13 5313 * 3833 3573 5727 4522 * * 1660 * * 3341 * 3581 2669 4368 4216 * * * 13 0 * * * * * * 5944 0 0 G 14 5117 * 5849 4620 5685 5813 * 3699 * 4448 5674 839 * 4586 * 3778 5313 4841 * * 14 28 5719 * 0 * * * 6073 1000 0 A 15 2958 * 4661 4547 * 4265 * 5322 3194 * * 3020 * * 5593 2235 2408 5404 * 4864 15 27 5775 * 0 * * * 6067 1000 0 H 16 2927 * 4772 5329 * 3550 4095 * 3539 4521 * 3539 * 2039 3709 3551 5048 6357 * * 16 17 6456 * 0 * * * 6198 1000 0 K 17 4243 * 3980 4995 * 6249 * * 2339 5360 6012 3103 * 3059 1569 6416 * 5904 * * 17 48 4934 * 1913 445 * * 6295 1599 0 F 18 6202 * * * 2190 * * 1251 * 2838 4957 * * * * * * 2818 * 4918 18 14 6679 * 2807 222 * * 6330 1000 0 R 19 3514 * 2414 4394 * 3640 6426 * 4812 * * 2079 * 4562 5199 2981 4776 4212 * 5243 19 11 7014 * 2000 415 * * 6339 1000 0 Q 20 3611 * 4419 2708 * 3877 4597 7101 4314 * * 2452 * 2442 3931 3439 6058 * * 6394 20 0 * * * * * * 6339 0 0 L 21 5764 * * * 4917 * * 4333 6133 803 4819 3780 * 5418 * * 5419 2677 * * 21 47 4972 * 2945 201 * * 6346 2105 0 D 22 4847 * 3049 2698 5968 3525 * 6162 3932 * * 2393 * 3400 3771 4008 4948 * * 4182 22 0 * * * * * * 6353 0 0 N 23 6129 * 3451 4048 * 3748 6623 6203 3691 * * 2052 * 3141 2556 3402 6068 * * 5375 23 0 * * * * * * 6396 0 0 R 24 4285 * 3053 3580 * 6250 6449 5983 2800 * * 4509 * 2821 2087 4046 4278 5172 * * 24 0 * * * * * * 6347 0 0 L 25 * * * * 5113 * * 1295 6416 2834 3615 * * * * 7023 4828 1801 * * 25 20 6196 * 0 * * * 6357 1000 0 D 26 5191 * 1589 3576 * 4811 4797 6666 3974 6490 6256 2181 * 3788 5261 4465 5457 * * * 26 0 * * * * * * 6357 0 0 K 27 5262 * 2711 3305 * 4001 5728 5279 2180 6856 * 3081 * 3072 3934 4915 4875 6172 * * 27 21 * 6097 * * * * 6357 0 0 L 28 5141 * * 6194 5291 * * 4410 * 1538 4062 2886 * * * * 3720 2051 * 5129 28 20 * 6153 * * * 0 6340 0 1000 D 29 4050 * 2380 2918 6443 3991 5133 * 3811 * * 3898 * 4852 1953 4086 6709 6308 * * 29 40 * 5202 * * * 0 6372 0 1722 T 30 4404 * 3232 4337 * 5301 * 6196 1435 * * 4441 * 4163 2781 3661 4254 6776 * * 30 0 * * * * * 0 6370 0 2681 R 31 5689 * 2884 1805 * 4553 6639 * 2736 6718 4774 4358 * 6247 2521 5262 5209 6853 * 6348 31 17 6382 * 1585 585 1998 416 6370 1000 2681 V 32 1527 * * 6536 6316 * * 3865 * 2765 3111 6744 * * * 4396 3342 2808 * * 32 40 5202 * 2887 209 * 0 6376 1736 2269 D 33 3482 * 3109 4428 6883 6926 5295 * 3219 * * 2012 * 5159 2304 4635 * * * 3646 33 40 5175 * 872 1140 1752 508 6397 1651 2269 K 34 1834 * * 5542 * 2314 4999 * 3642 * 4556 5601 * 3483 2985 3729 5758 6273 * * 34 14 * 6647 * * 1221 808 6403 0 1785 G 35 3473 * * 6421 6294 695 * 6330 * 6781 6332 4680 * * * 4829 5057 3041 * 6907 35 0 * * * * * 0 6409 0 1699 L 36 2649 * 6662 * 5471 3022 * 1740 * 4214 5735 * * * * 6908 3172 2457 * 6427 36 0 * * * * 785 1253 6409 0 1699 A 37 163 * * * * * * * * * * 5346 * * 5999 3911 * * * * 37 0 * * * * * 0 6419 0 1000 S 38 3046 * * 6520 * 3069 5554 3870 5848 2996 3545 2947 * 4981 6698 2079 6549 6318 * * 38 0 * * * * * 0 6419 0 1000 S 39 879 * * * * 4254 * 5520 * 5924 4835 6747 6318 6697 * 3002 3912 3212 * * 39 17 6444 * 2000 415 * 0 6419 1000 1000 A 40 1528 * * * * 5125 4838 2867 * 3228 3043 4098 6318 6440 * 3694 4763 5161 * * 40 18 * 6318 * * * 0 6419 0 1000 A 41 58 * * * * * * * * 5214 * * * * * 6349 * * * * 41 0 * * * * * 0 6385 0 1495 L 42 3581 * * * 5067 * 5527 3248 * 1887 1705 * 6010 4933 * * 4059 3747 * * 42 25 * 5844 * * 1069 934 6385 0 1495 N 43 1162 * * 6806 * 5289 * 6054 * 6647 * 5107 5139 4722 * 1848 3054 * * * 43 0 * * * * 747 1307 6422 0 1845 S 44 2248 * * * * 2475 * 6049 * 4859 4778 2305 * 4610 * 2367 3874 5778 * * 44 39 * 5240 * * * 0 6392 0 1000 L 45 3355 * 6264 * * * * 2150 6165 869 5181 * * 6940 5996 * 5309 5263 * * 45 281 2796 4918 788 1249 581 1593 6343 4000 2192 F 46 5184 * * * 3180 * 4784 6694 5665 5302 4059 5217 955 5185 4087 * 6574 4063 * 6399 46 66 4482 * 854 1163 424 1975 6389 2518 2632 Q 47 5033 * 4074 5886 3735 5490 * 6180 4936 5001 3726 5647 4262 1532 * 5151 3908 4859 * 3389 47 39 6902 5749 1000 1000 0 * 6378 1000 1000 P 48 4419 * 4002 4405 4995 4857 * 5543 6529 4331 * 3813 1854 4811 6820 5234 5171 2623 * 3525 48 76 5604 5026 922 1083 0 * 6395 1644 1682 Y 49 4807 * 2555 5783 6516 5214 5400 4015 5221 5116 * 3529 6755 4429 6736 3128 3149 3975 6579 2796 49 38 * 5268 * * 1558 598 6388 0 2304 G 50 4003 * 4473 3724 * 2336 6153 6065 4549 3943 6985 4241 3798 3995 3077 3488 4697 4969 * 6857 50 34 * 5433 * * 699 1380 6403 0 2741 V 51 2850 * 4088 4006 * 2973 * 7218 6685 5542 6659 3810 2014 5539 * 6034 5511 3066 * 3877 51 26 * 5827 * * 955 1047 6380 0 2717 G 52 5537 * 4474 4450 * 876 4997 * 3265 6332 6424 3265 * 4996 * 5166 6890 6428 * * 52 96 4714 5235 408 2022 925 1079 6379 2182 2668 K 53 4390 5635 5106 3810 * 5903 5860 * 1281 6925 * 4011 3930 3681 2965 5856 5850 * * 6660 53 33 6454 6473 0 * 420 1986 6355 1000 2240 V 54 4338 * * * 2860 6620 3953 3603 7194 3544 4675 4167 * * 6416 2842 2815 3526 4984 4141 54 17 6425 * 1000 1000 858 1158 6409 1000 1557 N 55 2792 * 5138 * 6761 4235 6340 6097 * 5751 3249 3889 * 3150 5338 1937 2905 6091 * * 55 0 * * * * 0 * 6415 0 1000 F 56 3884 5436 * * 2841 * * 2614 * 2203 5515 * * * * * * 1623 5980 5231 56 17 * 6457 * * * * 6420 0 0 T 57 2360 * * * 5856 1340 * * 6463 5389 3772 5868 * * * 2109 4814 * * * 57 0 * * * * * 0 6399 0 1000 A 58 1185 * * * 5308 4003 * 3907 * 3428 3898 * * * * * 4426 2325 * * 58 0 * * * * 0 * 6399 0 1000 G 59 1881 * * * * 666 * * * * * 5980 * * * 3600 * * * * 59 0 * * * * * * 6420 0 0 V 60 4113 * * * 3646 3440 * 3450 * 2813 4976 * * * * 4434 2851 1935 * 4102 60 0 * * * * * * 6420 0 0 G 61 3306 * * * * 246 * * * * * * * * * 4168 * * * * 61 0 * * * * * * 6420 0 0 G 62 3732 * * * 3957 3081 2952 * * * 5591 2758 * 6738 5835 3945 2538 5811 * 2620 62 15 * 6618 * * * * 6420 0 0 Y 63 4346 6697 * * 2751 * 3836 * * * * * * 6994 * 4451 6461 * 4812 685 63 0 * * * * 0 * 6408 0 1000 R 64 5524 * 3914 4401 * 2564 6124 * 2286 5463 5358 3460 * 5725 2073 4064 * 6766 * 6307 64 0 * * * * * * 6420 0 0 S 65 * * 3176 * * 739 * * 5044 * * 3211 * * * 2719 * * * * 65 0 * * * * * * 6420 0 0 S 66 3987 * * 1767 * 4659 * * 2523 * * 4618 * 2079 4589 4530 4341 6650 * 6948 66 0 * * * * * * 6420 0 0 Q 67 3739 * 5616 5237 * 4473 5047 * 5019 * * 3389 * 2155 * 2077 2970 6328 5251 4361 67 0 * * * * * * 6420 0 0 A 68 331 * 6212 * * 3342 * * * * * * * * * 3430 * * * * 68 0 * * * * * * 6420 0 0 L 69 4662 * * * 4059 3679 * 2963 * 2185 3839 * * * * * 5495 1460 * 5743 69 0 * * * * * * 6420 0 0 A 70 278 * * * * 4135 * * * * * * * * * 3078 * * * * 70 0 * * * * * * 6420 0 0 I 71 3679 * * * 3860 6944 * 2701 * 1938 4909 * * * * 6557 * 1373 * * 71 0 * * * * * * 6420 0 0 G 72 5980 * * * * 143 * * 6072 * * 6458 * * 6212 5236 * 6328 * * 72 117 3685 * 0 * * * 6420 3235 0 S 73 2872 5436 * * 5164 3321 * 3518 * 2862 3929 * * * * 3630 4183 2432 6907 3436 73 29 5657 * 0 * * * 6420 1617 0 G 74 2290 * 6552 * 4190 2407 * 6713 4240 * * 4738 * 3586 6017 2033 4009 4774 * * 74 90 4218 7276 0 * * * 6420 2674 0 Y 75 3141 * 6558 * 3652 6457 2741 4677 5798 4666 6869 * * * 4891 4686 3736 4966 5164 1630 75 29 5642 * 0 * 0 * 6424 2137 1000 R 76 3579 6544 5898 * 6773 4825 3829 5791 4689 6307 5255 4023 * 4527 2473 2769 3450 5709 * 2878 76 0 * * * * * * 6420 0 0 V 77 4190 * 2998 4412 2912 * 6724 3004 5944 3643 * 6465 2811 * * 4083 4370 3052 * 5152 77 77 4660 6328 0 * * * 6420 2602 0 N 78 6773 * 5083 4562 6531 4435 * * 3750 * 5343 1286 5945 6823 * 3042 2461 * * 5335 78 46 6447 5673 0 * 0 * 6401 1000 1000 E 79 4818 * 2855 1686 * 2567 5363 * 4965 * * 3533 4886 4087 4633 4706 4930 * * * 79 68 4435 * 1663 548 0 * 6422 2281 1625 S 80 4993 * 3294 * * 4362 4782 * 2567 * * 1447 5980 4842 2875 4990 5874 * * 6557 80 11 7038 * 0 * * * 6420 1000 0 V 81 6116 * * * 3610 4822 * 2993 5452 2787 4198 6544 * * 6296 5508 3419 2047 3028 5871 81 0 * * * * * * 6420 0 0 A 82 3556 * 6302 * 5640 5454 7249 3150 3938 3412 2907 4031 * * 3952 3153 3685 3166 5615 * 82 17 6441 * 1000 1000 * * 6420 1000 0 L 83 4268 * * * 3283 5133 * 2494 * 2449 3871 * * 6280 6296 6573 6552 1864 * 3911 83 12 6946 * 1000 1000 * * 6420 1000 0 K 84 5343 * * * * 5175 4375 5478 1747 * * 2549 * 6513 3254 2432 3375 6544 * * 84 0 * * * * * * 6420 0 0 A 85 1543 * * * 4382 2726 * 4579 6646 2370 5083 5288 * * * 5783 3948 3747 * * 85 0 * * * * * * 6420 0 0 G 86 3172 * 5432 6479 6280 1341 * 6788 4630 6296 * 3414 5343 5306 * 2637 3636 * * * 86 0 * * * * * * 6420 0 0 V 87 2767 * * * 4261 2896 * 3127 * 3851 4474 * * * * 4480 4554 1612 5419 * 87 21 6133 * 2380 308 * * 6420 1617 0 A 88 1722 * * * * 3671 5973 * 5676 * * 4704 * * 6312 1188 3425 * * * 88 50 * 4885 * * * * 6420 0 0 Y 89 2941 * 5841 * 3171 4094 6872 4013 6368 3623 4441 5832 * 5309 * 4340 3507 3067 4346 3007 89 91 6888 4254 2322 322 411 2011 6407 1000 2543 A 90 3265 * 2773 5666 6486 3424 5967 * * 6368 * 2124 5306 * * 2612 2873 4874 * 6848 90 97 5059 4827 306 2389 0 * 6355 1956 2884 G 91 3939 * 5560 4257 4397 2798 5382 * 4994 * * 3967 6549 5568 7025 1843 2104 * * * 91 66 6733 4837 0 * 525 1713 6384 1000 2240 S 92 4297 * 3165 3543 * 1905 5308 6839 4782 * * 3607 5302 4015 3532 2935 5156 * * * 92 79 4239 * 655 1455 0 * 6398 2888 2842 S 93 7057 * 3340 5789 * 1459 4364 6321 4417 6588 * 3114 * * 4686 2442 4561 * 6282 * 93 73 5322 5380 1991 418 * * 6417 2017 0 D 94 4829 * 2790 2628 * 3518 4026 * 3504 * * 2600 6734 3370 4563 3493 6995 * * 6430 94 25 5844 * 1000 1000 0 * 6417 1714 2100 V 95 3060 * * * 3171 7099 * 3687 4212 4879 6750 3896 5593 * 6420 3962 2646 2253 4784 5847 95 26 6838 6820 0 * * * 6408 1000 0 M 96 3359 * 4573 5332 * 1786 * 4997 4527 * 2917 6621 * 6419 * 2572 3498 4057 * * 96 14 * 6735 * * 0 * 6402 0 1000 Y 97 2244 6197 * * 3594 3490 * 3294 6956 5024 4588 * * * * 4969 5084 2177 4936 3238 97 0 * * * * 0 * 6403 0 1000 N 98 3580 * * * * 978 * * * * 4228 2690 * 6269 3048 4654 6777 5829 * * 98 16 6493 * 0 * * * 6389 1000 0 A 99 789 * * 6108 5727 4568 * 3940 * 5374 * * * * * * 5724 2140 * 6554 99 0 * * * * * * 6388 0 0 S 100 5521 * * * * 251 * * * * * 4470 * 5268 * 3902 * * * * 100 0 * * * * * * 6388 0 0 F 101 2765 * * * 3642 6269 * 2563 * 3145 4188 * * * * * * 1353 * 5003 101 0 * * * * * * 6360 0 0 N 102 3659 * 6214 * 6745 1327 5999 * 6704 5714 * 4301 * 4510 * 1969 3653 5282 * * 102 0 * * * * * * 6360 0 0 I 103 5125 * 6140 * 2568 5815 6622 2900 6731 4111 5840 * * * * * * 4950 3945 1169 103 0 * * * * * * 6343 0 0 E 104 * * 5949 3134 * 2493 * * 3240 6601 * 5059 * 2709 4182 2190 3200 6609 * * 104 0 * * * * * * 6183 0 0 W 105 * * * * 973 * * * * * * * * * * * * * 1028 * 105 0 * * 0 * * * 6059 0 0 //