HHsearch 1.5 NAME c2lcxB_ FAM FILE c2lcxB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2lcxB_.a3m DATE Thu Jan 10 02:21:47 2013 LENG 44 match states, 44 columns in multiple alignment FILT 3 out of 7 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.3 EVD 0.5001 2.9406 SEQ >ss_dssp CCCCSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCCC >sa_dssp EEEEEECEDDEECDDEECDEDEEEDEDEEEDDEEEEEEEEEEEE >ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 97752147703467789999999999988888510546554209 >Consensus stlpxhaxtpliaagvigxlfxxviixlxxavxxrrksikkkra >c2lcxB_ STLPQHARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKKRA >UniRef50_Q4RQT4(268-312:996) Chromosome 2 SCAF15004, whole genome shotgun sequence n=1 Tax=Tetraodon nigroviridis RepID=Q4RQT4_TETNG E=1e-06 s/c=1.21 id=69% cov=95% ---PCHANctqgTPLIAAGVIGVLFMVVIIVLSVAVSMRRKNIKKKRA >UniRef50_B8A696(655-691:1295) Novel protein similar to vertebrate v-erb-a erythroblastic leukemia viral oncogene homolog 4 (Avian) (ERBB4) (Fragment) n=1 Tax=Danio rerio RepID=B8A696_DANRE E=2e-10 s/c=1.82 id=76% cov=86% -------RTPLIAAGLIGGLFVIVIIALGVAVYIRRKSIKKKRA # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1000 0 0 T 2 * * * * * * * * * * * * * * * * 0 * * * 2 0 * * * * * * 1000 0 0 L 3 * * * * * * * * * 0 * * * * * * * * * * 3 0 * * * * * * 1000 0 0 P 4 * * * * * * * * * * * * 0 * * * * * * * 4 0 * * * * * * 1225 0 0 Q 5 * 1000 * * * * * * * * * * * 1000 * * * * * * 5 0 * * * * * * 1225 0 0 H 6 * * * * * * 0 * * * * * * * * * * * * * 6 0 * * * * * * 1225 0 0 A 7 0 * * * * * * * * * * * * * * * * * * * 7 0 * * * * * * 1225 0 0 R 8 * * * * * * * * * * * 1537 * * 610 * * * * * 8 610 1537 * 2000 415 * * 1309 1000 0 T 9 * * * * * * * * * * * * * * * * 0 * * * 9 0 * * * * * * 1309 0 0 P 10 * * * * * * * * * * * * 0 * * * * * * * 10 0 * * * * * * 1309 0 0 L 11 * * * * * * * * * 0 * * * * * * * * * * 11 0 * * * * * * 1309 0 0 I 12 * * * * * * * 0 * * * * * * * * * * * * 12 0 * * * * * * 1309 0 0 A 13 0 * * * * * * * * * * * * * * * * * * * 13 0 * * * * * * 1309 0 0 A 14 0 * * * * * * * * * * * * * * * * * * * 14 0 * * * * * * 1309 0 0 G 15 * * * * * 0 * * * * * * * * * * * * * * 15 0 * * * * * * 1309 0 0 V 16 * * * * * * * * * 1624 * * * * * * * 566 * * 16 0 * * * * * * 1309 0 0 I 17 * * * * * * * 0 * * * * * * * * * * * * 17 0 * * * * * * 1309 0 0 G 18 * * * * * 0 * * * * * * * * * * * * * * 18 0 * * * * * * 1309 0 0 G 19 * * * * * 610 * * * * * * * * * * * 1537 * * 19 0 * * * * * * 1309 0 0 L 20 * * * * * * * * * 0 * * * * * * * * * * 20 0 * * * * * * 1309 0 0 F 21 * * * * 0 * * * * * * * * * * * * * * * 21 0 * * * * * * 1309 0 0 I 22 * * * * * * * 1595 * * 1537 * * * * * * 1624 * * 22 0 * * * * * * 1309 0 0 L 23 * * * * * * * 1624 * 1595 * * * * * * * 1537 * * 23 0 * * * * * * 1309 0 0 V 24 * * * * * * * * * * * * * * * * * 0 * * 24 0 * * * * * * 1309 0 0 I 25 * * * * * * * 0 * * * * * * * * * * * * 25 0 * * * * * * 1309 0 0 V 26 * * * * * * * 580 * * * * * * * * * 1595 * * 26 0 * * * * * * 1309 0 0 G 27 1624 * * * * 1595 * * * * * * * * * * * 1537 * * 27 0 * * * * * * 1309 0 0 L 28 * * * * * * * * * 0 * * * * * * * * * * 28 0 * * * * * * 1309 0 0 T 29 * * * * * 1624 * * * * * * * * * 1537 1595 * * * 29 0 * * * * * * 1309 0 0 F 30 * * * * 1595 * * * * * * * * * * * * 580 * * 30 0 * * * * * * 1309 0 0 A 31 0 * * * * * * * * * * * * * * * * * * * 31 0 * * * * * * 1309 0 0 V 32 * * * * * * * * * * * * * * * * * 0 * * 32 0 * * * * * * 1309 0 0 Y 33 * * * * * * * * * * * * * * * 1537 * * * 610 33 0 * * * * * * 1309 0 0 V 34 * * * * * * * 1624 * * 1537 * * * * * * 1595 * * 34 0 * * * * * * 1309 0 0 R 35 * * * * * * * * * * * * * * 0 * * * * * 35 0 * * * * * * 1309 0 0 R 36 * * * * * * * * * * * * * * 0 * * * * * 36 0 * * * * * * 1309 0 0 K 37 * * * * * * * * 0 * * * * * * * * * * * 37 0 * * * * * * 1309 0 0 S 38 * * * * * * * * * * * 1537 * * * 610 * * * * 38 0 * * * * * * 1309 0 0 I 39 * * * * * * * 0 * * * * * * * * * * * * 39 0 * * * * * * 1309 0 0 K 40 * * * * * * * * 0 * * * * * * * * * * * 40 0 * * * * * * 1309 0 0 K 41 * * * * * * * * 0 * * * * * * * * * * * 41 0 * * * * * * 1309 0 0 K 42 * * * * * * * * 0 * * * * * * * * * * * 42 0 * * * * * * 1309 0 0 R 43 * * * * * * * * * * * * * * 0 * * * * * 43 0 * * * * * * 1309 0 0 A 44 0 * * * * * * * * * * * * * * * * * * * 44 0 * * 0 * * * 1309 0 0 //