HHsearch 1.5 NAME c2l8sA_ FAM FILE c2l8sA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2l8sA_.a3m DATE Sat Feb 4 17:43:54 2012 LENG 46 match states, 46 columns in multiple alignment FILT 36 out of 40 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.0 EVD 0.4747 2.4137 SEQ >ss_dssp CCCCCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCC >sa_dssp EEEEEEECEEDEEEEDDDDEEEEDEEEDDEEDECDEEEEEEEEEEE >ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >ss_conf 9876431189999999999999999999999854554667887519 >Consensus xgxpxxvpxwiiixsxixGlllLxxixxxLxKxGFFKRxxkxxmee >c2l8sA_ MGLPGRVPLWVILLSAFAGLLLLMLLILALWKIGFFKRPLKKKMEK >UniRef50_UPI0001A2D033(937-976:989) UPI0001A2D033 related cluster n=4 Tax=Clupeocephala RepID=UPI0001A2D033 E=0.0004 s/c=1.15 id=46% cov=89% ------VRIFIIVSSLIVGLIIFGLLVLTLWKLGFFKRTLKEKFRR >UniRef50_B0W840(930-969:994) Integrin alpha-PS5 n=1 Tax=Culex quinquefasciatus RepID=B0W840_CULQU E=0.0004 s/c=1.15 id=41% cov=89% ------VPMWVYVLSVLLGALILAVITHLLHKRQFFKRMTQSDMEE >UniRef50_Q293D2(1083-1126:1146) GA20821 n=3 Tax=Drosophila RepID=Q293D2_DROPS E=0.0008 s/c=1.02 id=42% cov=98% --LQSRLPIWIIIVSIIGGLLLLSAISYALYKFGFFNRAKKEELNR >UniRef50_UPI00005A0FAD(982-1027:1036) PREDICTED: similar to Integrin alpha-M precursor (Cell surface glycoprotein MAC-1 alpha subunit) (CR-3 alpha chain) (CD11b) (Leukocyte adhesion receptor MO1) (Neutrophil adherence receptor) isoform 4 n=1 Tax=Canis lupus familiaris RepID=UPI00005A0FAD E=1e-08 s/c=1.33 id=45% cov=96% ---PNEVynPIPLIVGSTVGGLLLLALITAGLYKLGFFKRQYKDMMSE >UniRef50_B7PDC7(197-237:410) Integrin alpha, putative n=1 Tax=Ixodes scapularis RepID=B7PDC7_IXOSC E=8e-07 s/c=1.34 id=38% cov=91% -----KVAAWIVAVSAFCGLILFSLIIAGLVHLGFFRRQQREALER >UniRef50_UPI000180B3B0(1037-1080:1104) PREDICTED: similar to integrin alpha Hr2 n=1 Tax=Ciona intestinalis RepID=UPI000180B3B0 E=0.0002 s/c=1.06 id=47% cov=83% ---------WIIAIAVAAGVLFLLLIILLLWKCGFFKRMTHPQSEE >UniRef50_Q69HR1(477-519:555) Integrin alpha Hr1-like (Fragment) n=4 Tax=Ciona intestinalis RepID=Q69HR1_CIOIN E=0.0004 s/c=1.07 id=26% cov=93% ----SKLDIGPLIGAIVGGIVLLVVIMLIMWKVGFFKSKYAKMRRE >UniRef50_Q9GSF4(966-1004:1021) Integrin alpha chain n=1 Tax=Podocoryna carnea RepID=Q9GSF4_PODCA E=2e-07 s/c=1.46 id=28% cov=85% -GESSTVEWWIIFICILVAILIIAVIVFIMYKKGFFKRK------- >UniRef50_UPI0001760575(1122-1166:1170) PREDICTED: similar to Integrin alpha-10 n=5 Tax=Clupeocephala RepID=UPI0001760575 E=7e-06 s/c=1.15 id=44% cov=89% ------ISLWILIGSIIGGLLLLALLVFILWKLGFFTRKQRKDEDE # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 1000 * * 1000 * * * * * * * * * 1 0 * * * * * * 1554 0 0 G 2 * * * * * 0 * * * * * * * * * * * * * * 2 0 * * * * * * 2286 0 0 L 3 * * * 2309 * * * * 2537 1159 * * * * 2490 * * * * * 3 0 * * * * * * 2483 0 0 P 4 * * * * * * 3099 * * * * * 608 3477 * 2864 * * * * 4 0 * * * * * * 2688 0 0 G 5 2507 * 3420 * * 2933 * * * * * 3907 * 3528 * 1921 4172 * * 2979 5 0 * * * * * * 2872 0 0 R 6 * * * 1249 * * * * 2580 * * * 3741 * 2514 4067 3286 * * * 6 109 3785 * 2322 322 * * 2918 1000 0 V 7 4957 * * * * * * 3096 * 2689 * * * * * * 4931 593 * * 7 50 4886 * 1000 1000 * * 3041 1000 0 P 8 3225 * 4097 3829 * * * * 4863 * * 5383 791 4850 4924 4053 * * * * 8 0 * * * * * * 3079 0 0 L 9 4289 * * * * * * 1429 4488 2453 4316 * * * * 4642 5144 3764 2659 * 9 0 * * * * * * 3124 0 0 W 10 * * * * 3958 3642 4874 * * * * * 5304 * * * * * 396 4778 10 0 * * * * * * 3132 0 0 V 11 * * * * * * * 915 4294 4519 * * 4273 * * * * 1816 * 4676 11 0 * * * * * * 3085 0 0 I 12 * * * * * * * 652 * 3446 * * * * * * * 3609 * 2397 12 0 * * * * * * 3001 0 0 L 13 2927 * * * 4136 * * 1312 * 3791 * * 4919 * * * * 1720 * * 13 0 * * * * * * 3001 0 0 L 14 5174 * * * * 2189 * 3020 * 2270 * * * * * 5127 4729 1490 * * 14 0 * * * * * * 3001 0 0 S 15 2280 4136 * * * 4343 * * * * * * * * * 540 * * * * 15 0 * * * * * * 3001 0 0 A 16 2322 * * * * 4880 * 1755 * 3376 * * * * * 4205 4549 1855 * * 16 0 * * * * * * 3001 0 0 F 17 3555 * * * 3199 * * 1474 * 2160 4680 * * * * * * 2449 * * 17 0 * * * * * * 3001 0 0 A 18 1758 4431 * * * 1396 * * * 4390 * * * * * 5536 5238 2457 * * 18 0 * * * * * * 3001 0 0 G 19 3475 * * * * 136 * * * * * * * * * * * * * * 19 0 * * * * * * 3001 0 0 L 20 4390 * * * 4680 * 4662 1859 * 1011 * * * * * * * 3297 * * 20 0 * * * * * * 3001 0 0 L 21 * * * * 4680 * * 2981 * 829 * * * * * * 5191 2035 * * 21 0 * * * * * * 3001 0 0 L 22 4283 4813 * * 4158 * * 2631 * 913 5579 * * * * * * 2798 * * 22 0 * * * * * * 3001 0 0 L 23 * * * * 2993 * * 4136 * 291 * * * * * * * * * * 23 0 * * * * * * 3001 0 0 M 24 1376 * * * 4880 3218 * 4010 * 4530 5331 * * * * 2542 * 2545 * * 24 0 * * * * * * 3001 0 0 L 25 1959 * * * * 3843 * 3301 * 1352 * * * * * * * 2475 * * 25 0 * * * * * * 3001 0 0 L 26 4305 4680 * * * * * 861 * 2225 4043 * * * * * * 3550 * * 26 0 * * * * * * 3001 0 0 I 27 * 5027 * * 4880 * * 2087 * * 4653 * * * * 3471 1690 1943 * * 27 0 * * * * * * 3001 0 0 L 28 2670 * * * 2739 * 4390 3906 * 1908 * * * * * * * * 5148 1816 28 0 * * * * * * 3001 0 0 A 29 2443 5148 * * * 2790 * 1642 * 2586 * * * * * * 3416 3998 * * 29 0 * * * * * * 3001 0 0 L 30 * * * * * * * * * 316 2344 * * * * * * * * * 30 0 * * * * * * 3001 0 0 W 31 * * * * * * 3549 * * * * * * * * * * 4431 1158 1251 31 0 * * * * * * 3001 0 0 K 32 * * * * * * 4431 4884 288 * * * * * 3309 * * * * * 32 0 * * * * * * 3001 0 0 I 33 3131 1854 * * 4806 * * 5331 4136 1913 * * * * 3347 * * 2966 * * 33 0 * * * * * * 3001 0 0 G 34 * * * * * 132 * * * * * * * 4390 4662 * * * * * 34 0 * * * * * * 3001 0 0 F 35 * * * * 0 * * * * * * * * * * * * * * * 35 0 * * * * * * 3001 0 0 F 36 * * * * 0 * * * * * * * * * * * * * * * 36 0 * * * * * * 3001 0 0 K 37 * * * 4729 * * * * 418 * * 4806 * * 2986 * 5550 5027 * * 37 0 * * * * * * 3001 0 0 R 38 * * * * * * * * * * * * * * 135 3490 * * * * 38 0 * * * * * * 3001 0 0 P 39 3129 * * * * 4536 4577 * 1711 * 3672 3524 5051 2594 4043 * 3768 * * * 39 0 * * * * * * 3096 0 0 L 40 * * * * * * * 3814 3032 2745 3340 * * 3317 3570 4675 2872 * * 2333 40 0 * * * * * * 3262 0 0 K 41 4174 * * * * * 3006 * 815 * * * * 3957 2416 * * * * * 41 0 * * * * * * 3262 0 0 K 42 * * 3408 1543 * * * * 2070 * * * 3332 3675 4511 3956 * * * 4700 42 0 * * * * * * 3251 0 0 K 43 4037 * 2791 1327 * * * * 2656 5178 2672 * * 4243 * * * * * * 43 0 * * * * * * 3261 0 0 M 44 * * * 4497 3837 4338 * * 4599 1843 1302 * * * 4110 4243 * * * * 44 0 * * * * * * 3261 0 0 E 45 * * 3744 795 * * * * 2889 * * 5034 * * 3273 4889 * * * 4432 45 0 * * * * * * 3244 0 0 K 46 * * * 1082 * * * * 2552 * * * * 4111 1740 * * * * * 46 0 * * 0 * * * 3189 0 0 //