HHsearch 1.5 NAME c2l76A_ FAM FILE c2l76A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2l76A_.a3m DATE Tue Dec 28 19:53:47 2010 LENG 95 match states, 95 columns in multiple alignment FILT 106 out of 206 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.9 EVD 0.4327 0.5840 SEQ >ss_dssp CCCCCCCCSSSCCCCCSCCCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECCCC >sa_dssp EEEEEEEEEEEEDEEEEEDEDBCABAEBEEEECEBEADDDCCADCAADDAAEDDECDDEEBCACDEEDEBDCECCAEECEBCEECDACBDDEEDE >ss_pred CCCCCEEEEEECCCCCCCCCEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEECC >ss_conf 97442146740789876686479999828941999974898189999999998499978778886783617221988739984658999998069 >Consensus xxxxxxxxlxxxxxxpxxxxxIxLkirxxxxxxxxxIxxxxxlxxLxxxxaxxxxixxxxixlxFdGxxlxxxxTpxxlxledxDxIDxxixxxx >c2l76A_ QGQEDEVVLVEGPTLPETPRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLTSS >UniRef50_B9HWC2(97-194:194) Predicted protein n=3 Tax=rosids RepID=B9HWC2_POPTR E=2e-16 s/c=0.88 id=19% cov=94% QSDSVQADLESGAEQPSKPHHerakIVISIQDKDEVKQFRVYKDEKFERLFKRYADKVKLGIESLVFMFDGDKINLTATPDSLGMDDEDIIE------- >UniRef50_Q553T4(806-875:2991) Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Dictyostelium discoideum RepID=Q553T4_DICDI E=1e-05 s/c=0.72 id=17% cov=48% --------------------LITVRFSSQRNVFKFDVKSSESIGTIKQMLAYNIKSSEHCICLTF------------------------------ >UniRef50_Q5CEM0(22-114:123) Ubiquitin-like protein n=3 Tax=Cryptosporidium RepID=Q5CEM0_CRYHO E=9e-15 s/c=0.87 id=21% cov=80% ----------------DDSQYVTVKVRSPDgEQVLYRIKKKTRLQKLMNSFCQRTGQNEQSIRFLFEGERLRPEMTAEDAGLQEGDLIDAMI---- >UniRef50_B8ZX10(175-266:356) Putative uncharacterized protein n=1 Tax=Papilio dardanus RepID=B8ZX10_PAPDA E=7e-09 s/c=0.67 id=20% cov=92% --ENTDVILLDDSDMLDENEELSVKVYWRsSEYHPFKIRKFQKLTTIFKYFAEKENVSENNLLFMYNDRILKSDDTPDSIKYNIAKFID------- >UniRef50_A4D9Q0(321-403:404) Putative uncharacterized protein n=3 Tax=Trichocomaceae RepID=A4D9Q0_ASPFU E=9e-08 s/c=0.70 id=17% cov=80% ----------------DQKHLMRLVYKCPGfDKFETKVASNAPVSQAIAAFRLAKRIPsERKIHLVFDGDCLDPNACFTDYDITDDDLVDVLI---- >UniRef50_UPI0001554E1E(6-85:434) PREDICTED: similar to Ubiquilin 3 n=1 Tax=Ornithorhynchus anatinus RepID=UPI0001554E1E E=1e-06 s/c=0.67 id=17% cov=51% ------------------ARIIQVTIKTPKDREEFGLPDSCTVQQLKEKISKRFKAHSEQLVLIF------------------------------ >UniRef50_D1PR04(69-148:721) Ubiquitin family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PR04_9FIRM E=4e-05 s/c=0.61 id=21% cov=36% --------------------------------ITLEVEPTDRIEDVKQKIQDKEGIPPERQRLIF------------------------------ >UniRef50_D0MZH9(15-97:268) Ubiquitin family protein, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MZH9_PHYIN E=0.0002 s/c=0.56 id=19% cov=87% ----------EPPIAAESAQ-LSLKVRTlDQRTYPITICAAASVPQLKELVAAETGVTLARQRLIYRGRVLKNDQTLSAYSLEDGHVLHLVVRA-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Q 1 * * * * * * * * * * * * * 0 * * * * * * 1 0 * * * * * * 2272 0 0 G 2 * * * * * 1678 * * * * * * * * * 541 * * * * 2 0 * * * * * * 2272 0 0 Q 3 * * 1892 1892 * * * * * * * * * 2188 * * * 2049 * * 3 0 * * * * * * 3054 0 0 E 4 * * 2551 1141 * * * * * * * 2381 * * * 2443 * * * * 4 0 * * * * * * 3806 0 0 D 5 * * 1177 * * * * * * * * * * * * * 1419 2443 * * 5 0 * * * * * * 3806 0 0 E 6 * * 2808 1055 * * * * * * * * * 2067 * 2864 * * * * 6 0 * * * * * * 4519 0 0 V 7 3105 * 3060 3366 * * * 3232 * 1943 * 3424 * * * * * 2272 * * 7 0 * * * * * * 4855 0 0 V 8 2805 * 3105 * * * * 2180 * 2325 * * * * * 3060 * 2318 * * 8 0 * * * * * * 4855 0 0 L 9 3060 * * * * * * 3095 * 690 * * * * * * * 2805 * * 9 0 * * * * * * 4855 0 0 V 10 * 3095 * 2229 * * * * 3424 3016 * 3232 * 3060 2805 * * 3583 * * 10 0 * * * * * * 4855 0 0 E 11 * * 2449 843 * * * 3347 * * * * * * * 2632 * * * * 11 0 * * * * * * 4708 0 0 G 12 2853 * 3663 3744 * 1049 * * 3985 * * * 3942 * * 5598 3722 * * * 12 0 * * * * * * 5164 0 0 P 13 3266 * * 4052 * * * * * * * * 1076 * * 2088 2984 * * * 13 0 * * * * * * 6011 0 0 T 14 3401 * 4150 3394 * * * 4264 * * * * 3474 5992 * 3100 1884 2262 * * 14 0 * * * * * * 5564 0 0 L 15 2726 4260 4233 * * * * * 4318 3068 4200 * 4738 3328 4932 2749 2314 * * * 15 78 * 4245 * * * * 5632 0 0 P 16 3740 * 4604 3826 * 4654 * * * 4563 4027 * 921 * * 4581 4623 * * 4065 16 54 * 4772 * * 0 * 6175 0 1000 E 17 * * 1806 1780 * * 5277 * * * * 4737 4218 3867 5365 2481 4893 * * * 17 0 * * * * 0 * 6912 0 1000 T 18 5761 * 4081 4262 * * * * 3232 * 5101 4441 * 3524 4097 2022 2346 3314 * * 18 16 6464 * 2000 415 * * 6988 1000 0 P 19 2952 4569 3756 * 5228 4636 * * 3686 * * 3509 2453 * 3686 2102 5119 * * * 19 0 * * * * * * 7175 0 0 R 20 5973 * 4096 3289 * * 4477 3955 2003 * * 4900 5385 2474 2336 5108 * * * * 20 27 * 5754 * * * * 7473 0 0 L 21 4674 * 5545 2416 3458 4460 4308 4934 2984 3165 4992 5864 * 5902 4411 5201 5010 * * 3012 21 25 5879 * 2000 415 0 * 7513 1000 1000 F 22 * * 5405 4625 4535 * * 756 * 2817 5347 * * * * * * 2898 * * 22 0 * * * * * * 7660 0 0 P 23 * * 5328 * * * 6071 5549 3174 5840 5847 3123 3873 3663 3431 3054 2113 3523 * * 23 0 * * * * * * 7660 0 0 L 24 * * * * * * * 1922 * 921 5250 * * * * * * 2461 * * 24 23 * 5956 * * * * 7579 0 0 K 25 * * * 5332 * * 4309 * 1161 5895 4977 4093 5441 4948 3322 4143 3431 3931 * * 25 0 * * * * * 0 7553 0 1000 I 26 * 6686 * * 3282 * * 1603 * 2900 * * * * * * 4921 1447 * 5342 26 21 6092 * 1585 585 * 0 7553 1000 1000 R 27 * * * * * * * 5228 2161 4379 5699 * 6686 2624 1337 4220 * 4471 * 5980 27 68 4447 * 0 * 0 * 7553 2199 1000 C 28 5980 2978 3311 * 6259 3896 * 4432 * 3978 5085 4952 * 5949 * 2214 2608 5667 4112 4994 28 199 3375 4954 229 2769 * * 7579 3708 0 R 29 5100 * 3939 3346 * 5438 4776 * 2687 * * 3359 3041 2624 2677 * 4485 * * 6613 29 89 4070 * 640 1481 0 * 7643 2687 1629 A 30 5515 * 2627 3442 5384 2515 5891 * 2753 5579 * 4130 * 5967 4202 2811 3851 * * * 30 248 2664 * 820 1206 * * 7616 4007 0 D 31 * * 2356 2300 * 2589 * * 2798 * * 4032 6305 3752 4242 4417 5429 5588 * * 31 110 3768 * 233 2744 * * 7728 3045 0 L 32 4628 * 3794 3550 6194 6084 * 3850 3030 3706 6344 5204 4331 4056 3661 5611 3840 2665 * 5104 32 67 4471 * 0 * * * 7728 2027 0 V 33 5835 * * 3932 3183 * 2980 2577 3883 3052 5127 * * 5305 * * 5858 2241 * 4595 33 48 5629 6317 0 * * * 8049 1000 0 R 34 5010 6290 6193 2973 4790 * 6372 6138 2362 5360 * 5293 5321 6409 1931 3628 2961 * * * 34 85 4645 5832 649 1466 0 * 7902 1747 1000 L 35 5865 5838 * * 1724 * 5867 2017 * 2664 * * * * 5697 * 5882 2926 * 3777 35 29 5630 * 0 * 0 * 7859 1000 1000 P 36 6311 * 4503 3574 * 6258 4456 * 2402 6200 6195 4479 3365 4607 3005 3160 2600 * * * 36 0 * * * * * * 7900 0 0 L 37 5085 * * * * * 6245 1380 * 3289 3768 * * * * * 5424 1489 * 5801 37 0 * * * * * * 7932 0 0 R 38 4612 6302 5277 4049 6436 4932 6540 * 1820 5061 * 3859 3614 * 2207 3613 6055 * * 5156 38 0 * * * * * * 7985 0 0 M 39 3595 * 4589 3837 6676 5579 * * 2460 4205 2785 * 3419 6208 3212 3568 4400 4798 * 6439 39 0 * * * * * * 7981 0 0 S 40 4209 * 2545 5980 4952 5430 * 5860 4198 5470 * 2681 * * 5515 2383 2215 * * 5382 40 0 * * * * * * 8002 0 0 E 41 2772 6645 2514 2939 6259 5227 6604 * 5692 * 4535 * * 3706 * 3874 1935 5697 * * 41 0 * * * * * * 8039 0 0 P 42 5580 * * 4076 * * * * 2489 4734 * 6610 2055 4307 4068 3063 2162 * * * 42 0 * * * * * * 8245 0 0 L 43 5361 * * * 2009 * * 2255 * 1802 3298 * * * * * * 2951 * * 43 0 * * * * * * 8181 0 0 Q 44 3552 5653 4263 3044 * 3622 * 6450 3057 5180 6486 5704 6625 2666 3818 2510 5586 * * 5977 44 0 * * * * * * 8181 0 0 S 45 5432 * 4046 3306 6345 5248 6340 4020 1762 5969 * 6450 6118 4143 3495 3367 3752 4334 * * 45 0 * * * * * * 8181 0 0 V 46 4020 * * * 5655 5488 * 2253 * 1004 * * * * * * 5665 2573 * * 46 0 * * * * * * 8181 0 0 V 47 4359 * * * 2445 * 6666 2949 2037 3865 2521 * * 6186 6615 5704 6400 4185 * 4978 47 13 6828 * 0 * * * 8181 1000 0 D 48 3299 * 2736 2190 * 4838 * 4199 3556 * * 3925 * 4676 3537 3280 4043 * * * 48 20 6165 * 0 * * * 8181 1000 0 H 49 2057 6537 6494 4006 * * 3784 5710 2651 3614 5744 6149 * 4435 3759 4125 4564 4299 * 4652 49 0 * * * * * * 8180 0 0 M 50 6282 4168 * * 2392 * * 3111 * 2875 5694 * * * * * 6357 3188 * 1524 50 18 6359 * 2322 322 * * 8065 1000 0 A 51 1334 2736 * 4192 5490 5281 * * 6386 4307 * * * 5293 4071 2988 5588 5107 * 5204 51 13 6766 * 2322 322 * * 8065 1000 0 T 52 4142 * 3420 2138 * 6381 * 4818 2488 5628 * 3383 * 3861 4231 4120 4115 4985 * 6375 52 0 * * * * * * 8065 0 0 H 53 3779 * 3969 3054 6023 * 3564 * 2436 6025 4762 3874 * 3274 2674 5499 6392 5735 * 5331 53 0 * * * * * * 8065 0 0 L 54 4808 4834 * 3398 3077 * 4257 3708 3663 3098 4118 4551 6233 4766 4473 * 3448 3510 * 5917 54 0 * * * * * * 8071 0 0 G 55 * 5411 3912 3487 * 1462 6612 * 3053 * 6087 2787 6085 5162 4535 3615 * * * * 55 41 5160 * 1521 618 * * 8071 1762 0 V 56 3928 4782 * * * * 5847 2247 4735 2392 5772 * * 5682 6257 4106 4910 1971 6050 5084 56 0 * * * * * * 8077 0 0 S 57 3339 * 2793 3955 * 5509 5113 6359 5845 6193 * 4691 1692 4721 * 2586 5061 5982 * * 57 31 5578 * 0 * * * 8080 1639 0 P 58 6342 * * 3913 5705 4905 * 4227 3877 2934 4700 5306 2248 5366 3535 4051 4501 3141 * 6175 58 12 6910 * 1585 585 * * 8080 1000 0 S 59 4522 * 2777 2736 * 4134 4294 * 4905 * * 2992 * 3845 3722 2611 4383 6766 * 5193 59 46 5005 * 0 * * * 8080 2194 0 R 60 4989 5269 3573 4127 * * 4352 * 3131 4905 6694 3785 * 2563 2806 3599 3139 6116 * * 60 141 3758 5679 511 1745 * * 8080 2981 0 I 61 4083 5142 * * 4204 5056 * 2107 * 2243 5214 6351 * 3188 6236 * 6347 2466 * 5083 61 19 6236 * 1000 1000 * 0 8009 1000 1000 L 62 5415 3668 6938 6020 6796 * 6381 4206 2823 3612 5819 7699 * 5336 1881 3809 4292 3072 * 5962 62 0 * * * * 0 * 8009 0 1000 L 63 * * * * 1298 * * 3997 * 1051 4378 * * * * * * * * * 63 0 * * * * * * 8080 0 0 L 64 5406 6753 5627 6519 3555 * * 2001 3803 2970 4132 5679 * * * 3909 2858 4520 5982 4027 64 0 * * * * * * 8080 0 0 F 65 * 5379 * * 791 * 6491 6057 6521 3541 * * * * 5120 * 5970 * 5987 2221 65 13 * 6845 * * * * 8080 0 0 G 66 4629 * 1266 4148 * 5005 * * 2817 * * 2888 * 4514 3186 6396 * * * 6187 66 0 * * * * 0 * 7372 0 1000 E 67 * * 2952 4838 * 398 6096 * * * * 5620 * * * 6321 5081 * * * 67 11 * 7056 * * * * 7391 0 0 T 68 5833 * 2799 2506 5722 6069 * 4697 2848 3951 * 4570 * 3581 2827 5664 5656 4052 * 5619 68 0 * * * * 0 * 7377 0 1000 E 69 4497 5515 4355 4159 6643 * * 3533 3569 3777 6184 4652 4609 4993 2092 4672 4432 3127 6063 * 69 0 * * * * * * 7394 0 0 L 70 * * * * 5773 * * 1569 * 989 4905 * * * * * * 3487 * 5763 70 46 5709 6351 1572 592 * * 7393 1731 0 S 71 4297 5394 2284 4738 * 5100 * * 2755 5351 5777 3456 3798 4034 4045 3078 4458 6167 * * 71 0 * * * * 0 * 7381 0 1000 P 72 5561 * 2774 3801 * 3398 5457 4783 4518 3159 5075 4322 1998 6396 5773 4119 5790 6006 * * 72 17 6424 * 0 * * * 7393 1000 0 T 73 5621 5587 2109 3177 * 6316 5364 6171 4732 6831 6998 2668 * 5383 6680 3493 2354 * * 4797 73 0 * * * * * * 7393 0 0 A 74 4030 * 1497 3490 * 5184 * * 3608 4775 4931 5820 * 3249 4272 3289 5094 6580 * * 74 9 7321 * 0 * * * 7393 1000 0 T 75 * 5483 * * * * * * 5390 4697 * 6351 * 6067 6103 3351 367 * * * 75 0 * * * * * * 7393 0 0 P 76 3609 5840 * * 4470 * * 4398 * 3183 * * 827 * * * * 2896 * * 76 0 * * * * * * 7393 0 0 R 77 2598 5375 3190 2990 6686 4038 * * 3288 5044 5998 4593 * 3406 4635 2910 6059 6179 * 5759 77 0 * * * * * * 7398 0 0 T 78 6090 * 1572 3247 4777 5998 * * 5141 5818 * 6096 * 5174 6092 1786 3680 * * 5611 78 0 * * * * * * 7398 0 0 L 79 5269 5430 * 5414 4974 * 6502 3066 * 957 5809 6191 * 5314 * * 5076 4722 * 2989 79 0 * * * * * * 7021 0 0 K 80 5675 * 2395 2510 * 1781 6355 * 3680 * * 3016 * 6364 4918 4552 * 6378 * 6651 80 0 * * * * * * 7021 0 0 L 81 6144 * * * 5148 * * 2414 * 1110 2342 * * * * * * 3575 * 5290 81 0 * * * * * * 7021 0 0 G 82 5282 * 3928 1330 * 5265 4462 * 3456 * * 4257 * 3099 4789 3791 4402 5402 * * 82 0 * * * * * * 6949 0 0 V 83 * * 1162 3690 * 4337 5305 3852 6252 * * 3500 5947 * * 3736 5888 3738 4950 6093 83 0 * * * * * * 6949 0 0 A 84 3135 * 3146 3735 6368 1445 * * 5155 5398 5217 3192 * 5574 4425 5269 5682 * * 5822 84 0 * * * * * * 6949 0 0 D 85 4826 * 349 4101 5227 * 5444 * 6257 * 6262 * * 6060 * 5452 * 7020 * * 85 0 * * * * * * 6949 0 0 I 86 5487 4524 * 4474 4003 * * 1552 5321 3608 * * * 4360 6384 6375 2414 3078 * * 86 0 * * * * * * 6949 0 0 I 87 * * * * * * * 507 * 2826 6016 * * * * * * 2836 * * 87 0 * * * * * * 6949 0 0 D 88 * * 595 2342 * * 4079 * 5719 * * * * 6052 6793 5558 5867 * * * 88 0 * * * * * * 6689 0 0 C 89 1994 2273 * * 4025 * * * * 4151 * * * * * * * 1357 * 4879 89 0 * * * * * * 6093 0 0 V 90 4932 * * * 3103 * 5236 2575 4081 2804 4550 * * * 5218 * * 1378 * * 90 0 * * * * * * 6113 0 0 V 91 * * * * * * * 1462 * 2225 * * 5023 * * 5014 * 1468 * * 91 0 * * * * * * 6067 0 0 L 92 * * * * * * * 1744 * 1529 * * * * 3619 * 3606 2384 * * 92 0 * * * * * * 4905 0 0 T 93 2009 * * * * 2968 * * 1943 * * 2844 * * * 2979 3357 * * * 93 0 * * * * * * 3602 0 0 S 94 1461 * 2555 * * * * * * * * * * * * 1100 * * * * 94 0 * * * * * * 3068 0 0 S 95 * * * * * * * * * * * * * * * 424 1974 * * * 95 0 * * 0 * * * 2791 0 0 //