HHsearch 1.5 NAME c2l5bA_ FAM FILE c2l5bA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2l5bA_.a3m DATE Sat Sep 17 09:53:47 2011 LENG 31 match states, 31 columns in multiple alignment FILT 1 out of 5 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.0 EVD 0.5361 4.0835 SEQ >ss_dssp CTTSCCCCHHHHHHHHHHHHHHHHHTTCCCC >sa_dssp EEEEEEEEEEEEDDCEEEDEECEECEEDDEE >ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC >ss_conf 9877651247798888899999998610479 >Consensus apgalptywpwlcaaaqvaalaawllgrrnl >c2l5bA_ APGALPTYWPWLCAAAQVAALAAWLLGRRNL # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 P 2 * * * * * * * * * * * * 0 * * * * * * * 2 0 * * * * * * 1000 0 0 G 3 * * * * * 0 * * * * * * * * * * * * * * 3 0 * * * * * * 1000 0 0 A 4 0 * * * * * * * * * * * * * * * * * * * 4 0 * * * * * * 1000 0 0 L 5 * * * * * * * * * 0 * * * * * * * * * * 5 0 * * * * * * 1000 0 0 P 6 * * * * * * * * * * * * 0 * * * * * * * 6 0 * * * * * * 1000 0 0 T 7 * * * * * * * * * * * * * * * * 0 * * * 7 0 * * * * * * 1000 0 0 Y 8 * * * * * * * * * * * * * * * * * * * 0 8 0 * * * * * * 1000 0 0 W 9 * * * * * * * * * * * * * * * * * * 0 * 9 0 * * * * * * 1000 0 0 P 10 * * * * * * * * * * * * 0 * * * * * * * 10 0 * * * * * * 1000 0 0 W 11 * * * * * * * * * * * * * * * * * * 0 * 11 0 * * * * * * 1000 0 0 L 12 * * * * * * * * * 0 * * * * * * * * * * 12 0 * * * * * * 1000 0 0 C 13 * 0 * * * * * * * * * * * * * * * * * * 13 0 * * * * * * 1000 0 0 A 14 0 * * * * * * * * * * * * * * * * * * * 14 0 * * * * * * 1000 0 0 A 15 0 * * * * * * * * * * * * * * * * * * * 15 0 * * * * * * 1000 0 0 A 16 0 * * * * * * * * * * * * * * * * * * * 16 0 * * * * * * 1000 0 0 Q 17 * * * * * * * * * * * * * 0 * * * * * * 17 0 * * * * * * 1000 0 0 V 18 * * * * * * * * * * * * * * * * * 0 * * 18 0 * * * * * * 1000 0 0 A 19 0 * * * * * * * * * * * * * * * * * * * 19 0 * * * * * * 1000 0 0 A 20 0 * * * * * * * * * * * * * * * * * * * 20 0 * * * * * * 1000 0 0 L 21 * * * * * * * * * 0 * * * * * * * * * * 21 0 * * * * * * 1000 0 0 A 22 0 * * * * * * * * * * * * * * * * * * * 22 0 * * * * * * 1000 0 0 A 23 0 * * * * * * * * * * * * * * * * * * * 23 0 * * * * * * 1000 0 0 W 24 * * * * * * * * * * * * * * * * * * 0 * 24 0 * * * * * * 1000 0 0 L 25 * * * * * * * * * 0 * * * * * * * * * * 25 0 * * * * * * 1000 0 0 L 26 * * * * * * * * * 0 * * * * * * * * * * 26 0 * * * * * * 1000 0 0 G 27 * * * * * 0 * * * * * * * * * * * * * * 27 0 * * * * * * 1000 0 0 R 28 * * * * * * * * * * * * * * 0 * * * * * 28 0 * * * * * * 1000 0 0 R 29 * * * * * * * * * * * * * * 0 * * * * * 29 0 * * * * * * 1000 0 0 N 30 * * * * * * * * * * * 0 * * * * * * * * 30 0 * * * * * * 1000 0 0 L 31 * * * * * * * * * 0 * * * * * * * * * * 31 0 * * 0 * * * 1000 0 0 //