HHsearch 1.5 NAME c2l52A_ FAM FILE c2l52A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2l52A_.a3m DATE Sat Feb 12 08:40:53 2011 LENG 99 match states, 99 columns in multiple alignment FILT 107 out of 471 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.3 EVD 0.4596 1.6668 SEQ >ss_dssp CCCCEEEEEECTHHHHHHSSSEEEEECSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTSTTSCCCTTEEEEEECCCSCC >sa_dssp EEDAEBCACBDEDAEECBEDDDBECCACCACCAADCABEDCEDADDDAADECDEEDEECECCEDBCACADDECBEEEECDEBEBEEEBCABADBCEEEE >ss_pred CCCCEEEEEECHHHHHHHCCCEEEECCCCHHHHHHHHHHHCHHHHHHHHCCCCCCCHHCCCCCCEEEEECCEECCCCCCCCCCCCCCCEEEEECCCCCC >ss_conf 972099998304558761991688427789999999998886478763127653200001345159999682225422446266798899996887899 >Consensus xxMxxvxVxffaxlrexxGxxexxxxxxTvxxllxxlxxxxpxlxxxlxxxxxxxxxxxxxxxxixixVNgxxvxxxxxxxxxLxdgdeVaixPpvsGG >c2l52A_ GHMAEVKVKLFANLREAAGTPELPLSGEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEGLETLLKDSDEIGILPPVSGG >UniRef50_B8GHP3(1-93:93) ThiamineS protein n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GHP3_METPE E=6e-12 s/c=0.77 id=23% cov=93% --MTAITIRFFAQFRELLGERIqlVVPEGTTITEAVQIVCRERNEAATALFGEDGTFRE------YVILMQNGIRVNRTEAATTVVADEDEVAVFPPVAG G >UniRef50_UPI0000E87A71(2-86:86) molybdenum cofactor biosynthesis protein D n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87A71 E=3e-05 s/c=0.58 id=24% cov=85% ----KINILFFASLRELFNSDSMEVTKPENIMSVRELLD--------FYADNEKGPWLELSKRFstIRVAVN----HSIVDWDTLINEGDEIAFLPPITG G >UniRef50_P40554(1-99:99) Ubiquitin-related modifier 1 n=16 Tax=Saccharomycetales RepID=URM1_YEAST E=0.001 s/c=0.45 id=22% cov=92% --MVNVKVEFLGGLDAIFGKQRVHkikmdkEDPVTVGDLIDHIVSTMinnPNDVSIFIEDD-------SIRPGIITLINDTDWELEGEKDYILEDGDIIS FTSTLHGG >UniRef50_A8M0H5(14-88:88) ThiamineS protein n=2 Tax=Actinomycetales RepID=A8M0H5_SALAI E=7e-05 s/c=0.64 id=18% cov=77% ------------------GRTDFDTDEGPLHDVIRRFAADHPDYRHRLLTPDGE------PLSYINICVDDDLIPRHRRQHTRVPADSTVTIIAPMAGG >UniRef50_B8MU37(540-636:636) Cystathionine gamma-synthase n=7 Tax=Leotiomyceta RepID=B8MU37_TALSN E=4e-09 s/c=0.64 id=21% cov=95% --MPTFKILYFASASSYTGKSSESLPAPlPLSGLFPLLEERYPGITKTVLSS----CSVSVGLEYVDIpsSTEGEgDGTTSAGKEVVIGEGEEVAIIPPV SSG >UniRef50_C6A4Y0(1-94:96) Putative uncharacterized protein n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A4Y0_THESM E=8e-06 s/c=0.54 id=19% cov=91% ----KLTLTYGGPFYEKTKKHKEIIELDknsiTVQELVKFLFEQYPELAQFFENNPEKIFEFST------IIVRGRVLIPQDLPRVHLSDGEEVFFLPVV HGG >UniRef50_Q21T02(2-89:89) ThiamineS n=2 Tax=Comamonadaceae RepID=Q21T02_RHOFD E=6e-07 s/c=0.62 id=21% cov=90% -----VTVEFAASLRHHVECAPQSVAPGTLRDVLEGALRAAPALAHYVFDD------QRAVRKHVAVFVNGQIVPERVHLTQWLGAGDRVLVIQALTGG >UniRef50_C5SFD3(1-83:83) ThiamineS protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SFD3_9CAUL E=1e-06 s/c=0.65 id=19% cov=84% ----KVTVLFFGKVADVMGERQRLFD-------ITDTPARLFDLRQSVLES--AFASGALEAQRVLMSVNQT----LTPDDRPLHDGDEVAFFPVFSGG >UniRef50_A6C6E9(1-92:92) Putative molybdopterin converting factor, subunit 1 n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C6E9_9PLAN E=8e-06 s/c=0.55 id=22% cov=90% ----KIKVEYTAQVKKAAGTGTEEYeipPGSTLQDLVKRVAETHSTALKPLL-----FPDSDVLHPSILLFVSNEQV--LWEEPRTLEPQQVVSILSPIS GG # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1473 0 0 H 2 * * * 2172 * * 1002 * * * * 1842 * * * * * * * * 2 0 * * * * * * 2486 0 0 M 3 * * * * * * * * * 3231 224 * * * 4751 * * * * * 3 0 * * * * * * 6159 0 0 A 4 1834 * * * * * 5113 4166 5081 5066 3512 3398 3183 * * * 3011 2654 * * 4 68 * 4444 * * * * 6514 0 0 E 5 4266 * * 4007 * 5838 5989 * 1434 * * 4708 * 3794 2730 5925 2286 * * * 5 44 5072 * 616 1524 0 * 7025 1444 1582 V 6 * * * * 5641 * * 1870 * 2965 2715 * * * * * * 1268 * 6531 6 0 * * * * * * 7300 0 0 K 7 * * 6516 4458 4954 * 4993 * 1749 5523 * 3687 6330 3949 3134 5857 1979 6689 * 6459 7 17 * 6389 * * * * 7339 0 0 V 8 5327 6438 * * 4986 * * 1836 * 3364 6421 * * * * * * 881 * * 8 57 5066 6858 1652 553 * 0 7329 1693 1000 K 9 6372 * * 3787 * * 6374 6147 1787 2670 6500 * * 4208 2162 * 3942 3849 * 5695 9 0 * * * * 953 1048 7324 0 1640 L 10 6210 4907 * * 1255 * * 5068 * 2120 * * * * * * 6150 4623 * 2187 10 18 6325 * 1000 1000 0 * 7337 1000 1000 F 11 6434 * * * 991 5460 5878 5495 * 3593 5661 * 3395 * * 4508 4519 5718 5029 3495 11 0 * * * * * * 7340 0 0 A 12 879 * * * * 1824 * * * 5678 6477 6628 5642 6513 5313 4037 5961 * * * 12 15 6626 * 0 * * * 7344 1000 0 N 13 4142 * 6930 4245 3914 4019 4886 5280 5019 4288 6994 5097 3561 3576 3997 2916 3222 4633 4606 5411 13 30 6445 6757 0 * * * 7344 1000 0 L 14 3111 * * * 2838 * 6672 3760 * 941 * * 5561 * * 6532 * 3851 * 4692 14 14 * 6678 * * * 0 7348 0 1000 R 15 3711 6545 6392 5815 * 5831 6049 * 2899 * 6480 5455 6469 4898 1001 3351 * 6619 * 5054 15 0 * * * * 930 1074 7428 0 1568 E 16 6397 * 2602 1207 6485 6631 5080 * 4403 5034 6717 5586 5912 3731 4366 3894 5409 * * * 16 33 * 5479 * * * 0 7422 0 1000 A 17 3284 * 6753 5609 4603 5104 4603 3251 3290 2759 5307 * * 3626 4831 5242 4038 3589 * 3484 17 0 * * * * * 0 7430 0 2095 A 18 2556 * 5460 6313 3718 5827 * 3567 * 2745 4524 6687 * * * 5003 2312 2629 * 5642 18 127 3760 6586 0 * 506 1758 7456 3236 2095 G 19 5551 * 5091 5093 * 547 6599 * 3904 6309 * 3711 6328 5701 * 5208 * * * 6510 19 57 4962 7206 1595 580 * 0 7457 2331 1644 T 20 4735 4283 4832 3291 6274 4859 * 5103 1983 5101 6068 * * 4301 3718 4824 2552 4409 6492 6706 20 71 4769 6469 373 2133 1778 497 7455 2452 2004 P 21 4355 * 2903 3377 6541 4294 5464 * 2846 4209 * * 3579 6442 2904 2822 4236 6732 * 6499 21 43 5083 * 983 1018 622 1514 7439 2035 2060 E 22 5956 * 4519 1270 6414 6610 5460 4682 4450 6897 5501 * 5102 3750 4064 3118 4334 5234 6474 * 22 105 4693 4974 359 2181 0 * 7465 2496 1000 L 23 5654 6645 4815 2560 4991 * * 2796 5386 2553 4869 * 6248 5534 4382 6906 5200 2097 * 6798 23 15 6550 * 1000 1000 1226 805 7433 1000 1883 P 24 4615 * 3168 1606 * * 5002 4312 5579 6594 * 4720 5597 5566 5390 3021 3059 4325 6642 * 24 78 4524 6799 1737 515 * 0 7448 2476 1443 L 25 5056 * * 4746 3233 7012 6308 2484 * 2110 6893 6492 6467 * * 6743 4732 1786 7053 5633 25 290 2455 * 1634 561 * 0 7442 4986 1901 S 26 4642 6774 2647 1681 * 5255 * * 6702 * * 5584 2243 4757 6466 3563 3850 6755 * * 26 205 3144 5692 1292 757 * 0 7442 4249 1901 G 27 2454 5030 4509 4305 5266 1570 6579 * 4653 3744 * 3855 5476 6648 5707 5572 * 4624 6582 6381 27 81 4193 * 1171 848 * 0 7429 2823 2675 E 28 2689 * 3642 2737 * 3958 * 5461 * 5451 6617 6667 3189 5642 4694 2072 3905 6374 * * 28 190 3326 5399 1529 614 * 0 7544 3950 2675 K 29 6562 6628 5492 4287 * * 6377 6507 4585 * 6410 3808 5144 * 5405 3631 677 * * * 29 44 7102 5451 1585 585 * 0 7515 1000 3337 V 30 4896 6348 5352 * 6750 * 6599 2995 * 2278 6366 5717 4712 * * 6346 4295 1199 * 6609 30 19 * 6245 * * 2831 219 7493 0 3729 I 31 3372 * 5340 4309 * 2510 5012 4657 4044 3396 * 4932 4447 4013 2473 3905 5470 5918 * * 31 32 6654 6377 1000 1000 3170 170 7477 1000 3600 D 32 3012 * 1641 1974 * 4094 6749 6480 4977 * 5682 5728 * 4064 * 4424 5547 6474 * 6301 32 0 * * * * 2102 383 7463 0 3652 V 33 2748 * 5448 5429 4091 * 6329 5199 * 1229 5541 * 6367 * * 5722 4931 2361 * * 33 0 * * * * 1763 504 7493 0 3242 L 34 5646 * * * 3844 * * 2241 5752 1336 4595 * * 6665 4222 6493 6631 2735 * 6991 34 0 * * * * 2176 361 7509 0 2715 L 35 3024 * 3358 2548 * 4275 5851 6525 3554 4351 6762 6462 5878 3050 2474 * 4151 * * * 35 14 6649 * 0 * 1839 473 7524 1000 2297 S 36 2380 6518 4795 2873 6394 5835 3691 4371 3822 3485 4701 4634 * 6072 3642 5365 4698 4987 6519 5042 36 17 6399 * 0 * * 0 7541 1000 1877 L 37 4667 * * * 5053 * 6655 3100 * 775 6760 * 6262 * 6881 6592 5534 2887 * 5518 37 30 * 5625 * * 1650 554 7541 0 1877 T 38 2785 4960 4152 2810 3729 5910 * 3693 4730 3303 5584 6821 5612 5781 4976 3310 4245 4015 * * 38 17 * 6458 * * * 0 7540 0 2378 D 39 2828 * 3307 1803 * 4175 5755 6913 4341 5176 6912 * * 3621 4345 3562 3870 5609 * * 39 40 * 5205 * * 2247 341 7531 0 2829 K 40 4165 * 3643 2859 6418 6666 * 4914 2701 5018 5012 4298 6923 4260 2218 5222 3460 6365 * * 40 64 5508 5545 0 * * 0 7526 1559 3360 Y 41 4129 4877 * 5537 3198 5511 3289 5579 4387 3674 5155 5041 * * 5482 4820 6091 5528 6581 1539 41 30 6333 6948 1585 585 2126 375 7519 1000 3809 P 42 4133 * 4334 3818 6487 2861 * * 6511 6500 * 5560 900 6276 4683 5587 * * * 5509 42 104 4863 4837 0 * 1723 520 7542 2366 3530 A 43 2926 * 3051 2173 * 2477 * 4944 5284 5345 * 4583 6482 3565 4596 5002 5032 5439 * * 43 95 5534 4564 0 * * 0 7515 1519 3755 L 44 4481 * 4681 4891 3030 6662 6554 3703 6440 1044 6851 * 6471 * 6226 6367 5489 4996 6590 4131 44 94 * 3982 * * * 0 7449 0 4359 K 45 3267 * 6347 4120 4331 3843 * 5458 2726 4241 * 6636 * 4821 2210 4007 4206 4730 5281 4685 45 29 * 5635 * * 3518 132 7378 0 4882 Y 46 4970 * 4128 2611 * 3020 4680 * 2434 6349 * 5277 4869 3793 3653 2993 6251 * 6187 5411 46 54 * 4773 * * * 0 7380 0 5051 V 47 4243 * 6220 3314 6194 6039 4475 4422 3010 4247 6161 6199 5391 3937 3333 4249 3621 3867 6516 3229 47 35 * 5397 * * 2606 259 7330 0 5253 I 48 4781 * * 6136 3039 * * 2613 3606 1308 6131 * * * * * 5766 2780 * * 48 93 * 4009 * * * 0 7394 0 5202 F 49 4406 5697 5274 5191 2425 6520 6484 2907 5566 1555 6441 * * * 4265 * 6152 4686 6758 4276 49 19 * 6232 * * 2524 275 7304 0 5552 E 50 3332 * 1740 2783 * 5335 6011 * 4249 4818 * 3768 6433 6035 4612 3733 3299 6676 * * 50 87 * 4091 * * 3159 171 7340 0 5252 K 51 4340 6791 2382 1713 * 3695 5038 * 5346 5159 * 4243 4644 * 4579 3181 4657 * * * 51 242 * 2695 * * 4126 85 7301 0 5496 G 52 4766 * 2278 3000 * 2863 5059 * 3933 3014 * 3819 4358 5147 5077 4216 5120 6028 * * 52 89 * 4061 * * 3982 94 7101 0 6096 D 53 3331 5845 3016 2587 5999 1617 * 5524 5956 4872 * 4930 4433 5092 * * 5970 4588 * 6194 53 120 * 3646 * * 3910 99 7200 0 6257 E 54 3973 * 4422 1940 4899 3598 * 4269 3010 4430 5489 5070 4898 * 3733 6423 4096 4473 * 6104 54 419 * 1988 * * 3136 174 7228 0 6406 K 55 4030 * 4010 5774 3056 2977 * 3315 3793 3335 * * 4058 * 4114 3896 5847 4129 5781 4014 55 54 5754 5780 4248 78 3444 139 6790 1000 6675 S 56 3890 5176 4843 4964 4608 4680 5917 5870 3767 4166 * 5814 3001 5312 2376 2829 5960 * 5658 4105 56 140 * 3431 * * 3463 137 6873 0 6564 E 57 2726 * 2978 2274 4856 3561 * * 5812 * 5930 4819 4950 * 4187 2672 4889 5875 6049 5935 57 78 * 4243 * * 3146 173 6809 0 6673 I 58 3151 * 3598 * 2783 3847 4910 3632 6297 2540 * 4555 5986 4150 5493 5559 4156 4430 * 5012 58 106 * 3823 * * 2483 284 6958 0 6545 L 59 2620 * 3074 3518 3662 5721 5139 6255 * 3242 6037 6107 5710 5954 3958 2611 5363 5139 * 4627 59 134 * 3496 * * 2468 288 6948 0 6315 I 60 3797 * 4407 5121 * 4786 4855 4946 4398 2549 * 4681 4918 4998 3540 2999 3636 3277 4940 * 60 30 * 5605 * * 1249 788 7049 0 6284 L 61 4386 6614 3950 4152 * 4951 6331 2675 * 1675 5573 5296 5215 * 5553 4565 4928 3026 6172 * 61 78 * 4239 * * 2960 198 7332 0 5483 C 62 3209 6509 4348 4641 6342 4624 3944 4258 3052 3502 6690 4727 * 5263 2031 4259 5289 5906 * * 62 53 * 4802 * * 2203 353 7346 0 5774 G 63 3883 * 3682 2923 * 5454 5059 * 3086 * * 5365 2452 4664 2836 2708 6358 * * * 63 20 6166 * 4322 74 2461 289 7469 1000 5368 S 64 4985 6190 5482 5280 3225 2605 4139 6487 4417 * 6999 3454 5034 4146 3724 4069 5406 5367 * 2723 64 29 6689 6652 1000 1000 2011 412 7502 1000 5085 I 65 4696 4525 * * 4655 * 6423 1666 * 3220 5513 * 6227 6284 * 5122 4772 1789 * 4594 65 0 * * * * 2502 280 7516 0 4678 N 66 4253 * 5746 6426 5308 6268 * 2368 4666 3556 3892 2889 * 4710 2217 3600 6383 6535 * * 66 13 * 6845 * * 695 1388 7544 0 4477 I 67 4696 4897 * 6583 3733 * * 1496 6555 3430 6595 * * * * 5600 5473 1596 * * 67 58 5027 6793 589 1577 1512 623 7471 1603 2998 L 68 1939 6490 * * 2850 * * 5323 * 1891 4554 5500 * * * 3109 5181 6499 7050 3875 68 0 * * * * 2087 387 7579 0 2298 I 69 * 6698 * * 6599 * 5610 2571 5907 2796 5761 * * 6489 6455 * 5847 805 * * 69 0 * * * * * 0 7589 0 2007 N 70 6485 * 2509 5199 6658 4920 6547 * * * * 516 * * 5514 6506 * * * * 70 27 * 5734 * * * 0 7589 0 2007 G 71 5754 6392 2844 5614 5634 987 3924 * 5521 5845 6485 5579 6866 3543 6552 5544 5526 * * * 71 44 * 5047 * * 2665 248 7574 0 2685 N 72 5151 * 6421 2200 * * 6452 6455 3117 6382 5102 4457 * 3507 1778 4892 4483 4066 * * 72 139 5849 3742 0 * * 0 7531 1000 3559 N 73 5946 * 2728 5569 3172 * 4166 3938 6481 4607 3838 2924 4847 4427 4449 4085 6418 4182 * 3771 73 121 * 3634 * * * 0 7420 0 4754 I 74 3445 * * * * 5057 * 1794 * 3949 * 5317 * 6469 * 3969 5248 1636 4624 4792 74 148 * 3360 * * 2466 288 7328 0 5437 R 75 5394 6158 3572 2550 * 5309 5275 5214 3570 5303 * 3531 4709 6164 2445 3999 2889 * * * 75 127 6042 3857 2000 415 2083 388 7291 1000 5818 H 76 3779 * 3341 4144 2608 4479 3190 5155 * 4751 * 3992 3366 6173 4043 4302 5585 6416 5858 4224 76 142 * 3412 * * 1841 472 7290 0 5778 L 77 4124 * 4109 4518 4615 4756 5057 5301 4448 1640 5419 5469 4383 3856 4774 3658 6105 5181 6626 6604 77 14 * 6684 * * 1506 626 7318 0 5773 E 78 2974 5257 2430 2782 * 2998 * * 4487 6506 * 4465 6592 3138 6327 3761 5434 4534 6248 * 78 50 * 4872 * * 1144 869 7406 0 4989 G 79 4195 * 2797 4075 5741 1228 5563 4971 5283 5409 * 5620 4553 * 4086 3785 * * * * 79 17 * 6439 * * 1940 436 7444 0 4526 L 80 4841 * 4577 3773 4189 6630 * 4737 3650 1823 3497 * 3857 4863 * 5776 5400 3684 3765 * 80 0 * * * * 623 1512 7485 0 4028 E 81 4033 * 1902 2386 5609 6799 5459 6763 3828 * * 3531 5587 5113 3806 3644 4046 * * * 81 39 * 5231 * * 1803 487 7538 0 2429 T 82 2837 6560 4190 4173 4677 * 5563 4767 6443 5803 6414 6703 6275 4493 3946 5063 1535 4291 * 4529 82 17 * 6419 * * 2566 267 7533 0 3085 L 83 3613 6606 6679 3179 * * 6321 4984 4040 4064 7003 7059 1827 5295 3523 5017 5107 2805 6555 * 83 11 * 6987 * * 611 1534 7532 0 3124 L 84 * * 6575 * 5130 * * 2725 * 738 * * 6532 * * * * 2327 * * 84 0 * * * * 1483 639 7576 0 1920 K 85 2958 * 5294 3045 * 4269 5273 * 2351 5569 6743 3684 4619 4110 3281 3433 5169 5577 * * 85 14 * 6727 * * * 0 7573 0 1430 D 86 3976 * 1354 2187 * * 4897 * 5626 6897 * 4222 2977 5230 6550 5305 5639 * * * 86 16 * 6477 * * * 0 7565 0 1928 S 87 6397 * 3438 4123 6479 921 5725 5555 5936 * 5661 3537 * 4688 5126 4071 6691 * * * 87 0 * * * * 1974 424 7546 0 2211 D 88 3563 6602 672 4386 * 6461 7132 * * * * 6642 * 4587 6589 3162 5125 6856 * * 88 15 6589 * 1000 1000 0 * 7551 1000 1817 E 89 6708 6631 5356 1074 * 6790 6359 5577 6637 4451 * 5293 5780 6681 3266 6566 3191 3381 * 6707 89 0 * * * * * * 7593 0 0 I 90 * * * * 5128 * * 1589 * 3334 5524 * * * * * * 949 * * 90 0 * * * * * * 7593 0 0 G 91 1324 * 5767 6779 5621 5983 5250 4052 6482 4341 * * * 4942 5775 3135 3748 3068 * 4985 91 16 * 6511 * * * * 7593 0 0 I 92 * 6672 * * 1767 * * 1641 * 2473 * * * * * * * 2353 * * 92 0 * * * * 0 * 7585 0 1000 L 93 * * * * 1844 * * 2077 * 2000 3816 * * * * 5613 5559 3326 6309 6732 93 0 * * * * * * 7593 0 0 P 94 5518 * * 7300 6574 6511 * * 6871 6808 6782 * 470 4165 * 3572 4611 * * 5574 94 12 * 6909 * * * * 7593 0 0 P 95 2562 * * 6782 * * * * * 5615 * * 667 * 6578 4375 4750 4276 6065 6816 95 0 * * * * 0 * 7473 0 1000 V 96 4407 * * 6205 4320 6649 * 2071 * 2947 3684 * * * * 6802 6734 1267 * * 96 0 * * * * * * 7465 0 0 S 97 1475 6620 * * * 3297 4483 * 6786 * 6214 * * * 5900 1644 3138 * * 6541 97 0 * * * * * * 7470 0 0 G 98 * * * * * 24 * * * * * * * * * 5920 * * * * 98 0 * * * * * * 7470 0 0 G 99 * * * * * 0 * * * * * * * * * * * * * * 99 0 * * 0 * * * 7456 0 0 //