HHsearch 1.5 NAME c2kviA_ FAM FILE c2kviA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2kviA_.a3m DATE Sat Nov 20 09:06:04 2010 LENG 77 match states, 77 columns in multiple alignment FILT 108 out of 7095 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.1 EVD 0.4726 2.1471 SEQ >ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC >sa_dssp EDADBCAAEDBEEEDEEECADEDADEDBECDEDECEECCACACACDCEBADDAACECBEEEEEEEECDBDECDDEEE >ss_pred CCCEEEECCCCHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEECCCCCC >ss_conf 98569973899577899999999863033333362274699997499999999997289498888999994287899 >Consensus PxxxlxVxnLxxxxxxxxxlxxxfxxxgxixxxxxxrgxafVxfxxxxxaxxAixxlxgxxixgxxixvxxaxxxxr >c2kviA_ PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR >UniRef50_UPI00006CB388(4-81:305) RNA binding protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CB388 E=2e-07 s/c=0.72 id=18% cov=100% PQTKLYVAKF-GNNVGRKEIEETFGKYGDIYSCKVNdrEGYATVSYKYQDQADKAISKLNGSDVLGGSLLVEHTLKKSR >UniRef50_A0DCX7(349-428:429) Chromosome undetermined scaffold_46, whole genome shotgun sequence n=3 Tax=Paramecium tetraurelia RepID=A0DCX7_PARTE E=3e-06 s/c=0.66 id=19% cov=96% PSQQIMLTNLKKEFCEEGIIYQTFSKFGQIEKIKIfceekNKNKCLIRYQELDSAIQAMAIMHNYEYNKRKIQIFFSK---- >UniRef50_Q57YE1(135-210:328) Splicing factor TSR1 n=2 Tax=Trypanosoma brucei RepID=Q57YE1_9TRYP E=0.0005 s/c=0.60 id=17% cov=99% -RTALFVGlGPSGRSISDRELRSKLEEAAPIIGFRRRGECAFVDVPSPAHARRMIEMMHNQYMQDCRLSVQQSREGK- >UniRef50_A5E562(85-170:510) Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5E562_LODEL E=0.0001 s/c=0.55 id=17% cov=97% PPYKAYVNNLPWD-ITEQDVIRHFEDrmqaNDIISDIKLPldretgqiKGVAYVTFTTRELLEESL-NLSMSEFNGRRMFVNVAPPQQ- >UniRef50_Q6CBU5(199-270:784) YALI0C15400p n=1 Tax=Yarrowia lipolytica RepID=Q6CBU5_YARLI E=0.0001 s/c=0.66 id=16% cov=81% ----VYLGNLPDE-MDQAALRDELAKFGPIDTVKLIsdRKYGFVHFLSISTAVKVVQQLKADPIWSQR----------- >UniRef50_UPI0001925D6F(8-90:273) PREDICTED: similar to predicted protein n=1 Tax=Hydra magnipapillata RepID=UPI0001925D6F E=0.0005 s/c=0.55 id=20% cov=99% PECTVFVSNI-ESRVTEELLWELFLQAGPLKNVHIPidrssgksKTFAFVTYSDISAVAFSCELFNTLKLFNRPIYCKPSKDGK- >UniRef50_Q4SP55(60-137:395) Chromosome 15 SCAF14542, whole genome shotgun sequence n=2 Tax=Tetraodon nigroviridis RepID=Q4SP55_TETNG E=0.0004 s/c=0.59 id=18% cov=100% PKTTLFVSNLPYRVKeaTLKSVFKKAVRVALPEIDGRKRGFAFVEFATVADAEKAMKSTENMKIRKRDIRAEFCQKQK- >UniRef50_B6JVQ9(189-273:476) RNA-binding post-transcriptional regulator csx1 n=2 Tax=Ascomycota RepID=B6JVQ9_SCHJY E=4e-05 s/c=0.58 id=15% cov=101% PEFSIFVGDLGPEVTEPMLLSLFQSRYRSCKSAKIMmdsntnlsRGYGFVRFYDENDQKRALTEMQGVYCGNRPMRIAMATPKSK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 6900 0 0 K 2 5080 5747 4973 3420 * 2568 * 5613 2795 * * 4244 * * 2482 2244 4889 5887 * * 2 0 * * * * * * 7635 0 0 S 3 3601 3323 4970 5128 5000 6154 4926 * 4107 6168 * 3632 6091 5041 3802 2233 2344 * * * 3 63 6440 5003 0 * * * 7787 1000 0 R 4 4937 3800 * 3995 * * * 4633 2875 5458 * 4321 * * 1953 4630 2482 3240 * * 4 32 5531 * 0 * 0 * 7880 1077 1702 L 5 * * * * * * * 2036 * 1136 6094 * * * * * * 1804 * * 5 0 * * * * * * 8119 0 0 F 6 * * * * 1406 * 3566 5052 * 3959 5680 * * * * 6412 * 5067 4270 1596 6 0 * * * * * * 8131 0 0 I 7 5631 * * * 6082 * * 1811 * 3839 5429 * * * * * * 769 * * 7 0 * * * * * * 8131 0 0 G 8 3390 6637 6508 5047 6082 1437 * * 3185 * * 6824 6096 5856 3394 3226 3822 6347 * 4893 8 17 6374 * 0 * * * 8131 1000 0 N 9 * * 4087 * 5133 2284 4878 * 4796 * * 922 6525 * 4368 4998 * * * 5728 9 0 * * * * * * 8131 0 0 L 10 * * * 6347 6412 * * 2172 * 714 5729 * 4303 * * * * 4378 6659 5867 10 63 * 4538 * * * * 8131 0 0 P 11 4184 6499 3197 5451 * 4461 4838 * 5608 6261 6273 3399 1208 * * 2760 * * * * 11 163 6579 3373 1585 585 0 * 8129 1000 3256 L 12 3736 * 3950 4683 3816 6241 4636 6251 4076 4465 * 5348 2224 4622 5699 4474 3716 * 4249 3224 12 212 6429 2997 1000 1000 0 * 8051 1000 4556 K 13 4639 * 2170 2326 5449 4380 * 6539 3619 6361 6477 * * 4696 3566 2574 5309 4814 * * 13 352 4840 2462 3337 150 0 * 8096 2235 4895 N 14 5119 6486 4522 5540 3491 4351 4786 6049 3888 4790 6141 3529 * * 4150 3266 2032 4094 6604 5175 14 133 * 3500 * * 0 * 8047 0 5397 V 15 3079 4499 4865 4853 4414 6815 * 2598 5499 3506 3457 6602 * * 6666 4177 3210 2824 6839 6279 15 48 6691 5430 1000 1000 0 * 8120 1000 3896 S 16 6630 * 2365 3745 * 5898 * * 4522 * 7022 4191 5618 5951 4402 2686 1515 * * 6727 16 14 * 6706 * * 0 * 8159 0 1751 K 17 4597 5779 2649 1555 * * 6177 5126 4157 4374 * 5244 3893 3807 5268 5660 5596 5923 5294 5619 17 14 6743 * 1000 1000 * 0 8174 1000 1000 E 18 3491 * 2641 2214 * 5708 6945 * 3528 5670 5161 3957 5734 3357 3708 4043 6908 5267 * 5543 18 78 4522 6793 1964 427 0 * 8174 2849 1000 D 19 5137 * 1910 2330 5577 5626 5716 4932 4297 3623 4716 5127 * 4309 5349 4917 3868 5408 * 6084 19 29 6595 6726 1000 1000 0 * 8173 1000 1000 L 20 6734 * * * 3872 * * 2104 5614 1184 5647 * * 6498 6428 * * 2517 * 6419 20 20 6213 * 1381 699 0 * 8169 1757 1000 F 21 4227 * 6423 4661 3159 5758 5106 4197 2475 4808 * 5135 * 4586 2410 4262 4900 5822 6586 3412 21 19 6290 * 1000 1000 * * 8176 1000 0 R 22 4709 * 3676 2277 * 6622 4267 6617 2607 5001 * 3124 5868 3435 4234 3859 5027 6506 * 5530 22 20 6210 * 2000 415 * * 8176 1697 0 I 23 4420 * 6290 5058 2368 * 4289 3053 5091 2169 5778 5828 * 5833 5020 6599 4793 3475 * 3776 23 0 * * * * * * 8176 0 0 F 24 4539 * * * 683 4983 * * * 3034 5052 * * 6522 * 4977 6589 3954 * 4938 24 13 6754 * 0 * * * 8176 1000 0 S 25 3687 5783 6618 2894 * 3510 6660 6720 3010 4908 5981 6290 * 3704 4480 1807 6330 5117 * 5828 25 45 5025 * 2725 237 * * 8176 2356 0 P 26 5728 6423 4606 3714 6436 5040 5247 6830 2487 4214 6649 5108 3390 3085 2928 3963 4203 5484 * 5751 26 27 5752 * 2906 207 * * 8176 1745 0 Y 27 4233 4278 * 6929 1699 5536 4876 4397 * 4943 5588 * 6436 * 6656 4452 * 3298 4836 2192 27 82 4694 5933 2734 235 * * 8176 3045 0 G 28 4909 * 5057 * 6583 613 * 4647 5516 6829 6659 * 6164 5003 5537 5628 4704 3907 * * 28 53 4782 * 1787 494 0 * 8165 2824 1677 H 29 6725 6489 4195 3178 4666 5923 5278 4454 2377 6766 6571 3980 3827 6599 3658 4033 3293 4220 * 4851 29 29 5641 * 0 * * * 8176 1731 0 I 30 6618 5630 4015 5220 5099 * 6290 1849 5113 3060 6599 5119 4916 * 5858 6661 5721 1796 * 7340 30 70 4406 * 2324 321 * * 8176 3129 0 M 31 5260 6387 4617 3114 6837 5612 5702 3350 2741 5458 5747 5327 5666 4386 3686 6062 4018 2604 6682 4406 31 10 7183 * 3000 193 * * 8176 1000 0 Q 32 5801 6755 2945 2978 6440 4167 5130 4215 3366 * 5241 3856 6394 5196 3068 2822 4820 6747 * 5084 32 15 6571 * 3907 100 * * 8176 1000 0 I 33 3483 3368 4557 6758 4088 6919 * 2377 6708 4123 * * * 4875 6724 3961 3547 2213 5871 6732 33 0 * * * * * * 8176 0 0 N 34 5854 5376 3751 5175 4295 3988 4831 5105 2668 5192 6718 4090 5563 4297 2659 4342 4768 4438 5480 4620 34 104 3850 * 2568 266 * * 8176 3822 0 I 35 6432 6968 5100 4852 4770 5148 5828 2175 4133 2661 4961 6718 5571 4447 4219 5029 4642 2755 6970 6850 35 426 1968 * 2312 324 * * 8176 6500 0 K 36 5969 5394 6880 6414 5068 * 2951 4215 2735 * 3623 3149 3206 4481 4000 3264 * 4476 * 5764 36 273 2535 * 2724 237 * * 8176 5672 0 N 37 6634 * 5601 5743 * 5686 5613 * 1789 6649 6278 4459 4191 5594 1442 4395 4264 * * 6661 37 148 3356 * 2622 256 * * 8176 5035 0 A 38 4770 5076 5628 6449 7043 1066 4137 * 4095 * 5897 3988 4392 4745 3326 5948 5590 * * * 38 92 4020 * 1855 467 * * 8176 3588 0 F 39 5144 4114 6571 5731 1567 * 5706 3871 5639 5654 5808 6163 6622 4505 * 6386 4313 4681 * 2105 39 56 4717 * 1881 457 * * 8176 2988 0 G 40 1085 3040 * * * 1820 * 6489 6586 6504 * * * * * 5784 5696 4646 * 6163 40 0 * * * * * * 8176 0 0 F 41 * * * * 757 * * 4349 * 3820 3979 * * * 5485 5562 4974 5467 5824 3194 41 15 6586 * 1585 585 * * 8176 1000 0 I 42 4641 4626 * * 5223 * * 2105 * 3356 * * * * * * * 830 * * 42 12 6909 * 1000 1000 * * 8176 1000 0 Q 43 5641 * 3983 2046 5265 5008 5782 * 4374 5109 6394 4868 * 2399 4149 5429 2645 4764 * 6634 43 0 * * * * * * 8176 0 0 F 44 * * * * 1049 * * * * 4002 3534 * * * * * 6387 5002 * 1622 44 0 * * * * * * 8176 0 0 D 45 3829 5410 3302 2414 5992 5444 * 5655 3685 5405 6774 6387 4661 3738 3794 4041 3600 4841 6725 4011 45 12 6880 * 0 * * * 8176 1000 0 N 46 6469 5771 1941 4486 6387 5594 6732 * 4348 5408 * 2797 * * 4936 2310 2881 6583 * 5255 46 14 * 6700 * * * * 8176 0 0 P 47 4389 * 5698 2547 * 6707 4959 4061 3157 3459 6279 5781 2775 5634 4200 3963 4073 3608 * * 47 0 * * * * 0 * 8175 0 1000 Q 48 3060 6183 3492 1665 6736 * * 5149 3857 * 6832 4093 7194 3336 3796 3778 * 5195 * 6634 48 0 * * * * * * 8176 0 0 S 49 2806 5916 1984 3743 6656 5670 4423 6708 5419 6506 7076 4797 * 3641 * 2409 4699 4832 * 7065 49 0 * * * * * * 8176 0 0 V 50 669 4406 * * 6754 5253 * 5291 6618 5675 5655 * 7139 6522 * 4341 4726 3210 * * 50 0 * * * * * * 8176 0 0 R 51 3998 6681 3180 2659 6659 6736 6571 4531 3039 4192 6843 4694 6795 3436 2976 6423 3534 4807 * * 51 0 * * * * * * 8176 0 0 D 52 3140 6736 3679 3501 * 5658 7018 4204 2645 3938 6735 3785 * 3940 2567 4040 6725 5810 * * 52 0 * * * * * * 8176 0 0 A 53 529 4200 * * * 6489 * 4179 5788 5381 4972 * * * * 5060 6330 3840 * * 53 0 * * * * * * 8176 0 0 I 54 5707 6718 * 6725 5070 * 6560 1875 4032 2228 3115 * * * 6909 * * 2302 6440 4790 54 11 * 7030 * * * * 8176 0 0 E 55 3195 6486 3333 2468 7044 6972 4404 6596 2520 5838 6738 4105 * 3543 3867 4531 4416 5460 * * 55 70 4392 * 867 1146 0 * 8171 3193 1000 C 56 3163 6948 5889 3181 5149 4484 5040 4540 2915 3420 5743 3625 6732 4311 4139 3493 4623 7030 7183 5595 56 31 7018 6183 1000 1000 * * 8176 1000 0 E 57 4569 * 6149 4742 3621 5061 * 6734 5132 1191 2995 5678 6878 * 5867 5795 4215 4945 * 4493 57 14 6733 * 0 * 0 * 8152 1000 1000 S 58 5367 * 3352 5901 * 5814 2638 6701 4620 * * 1563 5680 3162 3987 3644 * 6708 * 6656 58 50 * 4882 * * * * 8176 0 0 Q 59 5252 6683 3903 4763 * 1178 5341 * 3876 * * 2863 3603 5773 5326 4931 6696 * 6654 6587 59 13 6787 * 0 * 967 1034 8159 1000 2713 E 60 4141 6719 6637 4252 3955 6601 3178 4055 2972 5725 5236 6645 * 4144 4827 3582 3385 3675 * 3415 60 0 * * * * 0 * 8151 0 1651 M 61 6831 6308 5068 2637 4185 * 4936 4222 3862 3129 4502 5677 3737 3771 5089 4416 4585 3725 6695 4363 61 21 6084 * 1307 747 * * 8163 1780 0 N 62 * 5609 * * 2505 * 6611 1534 6676 2220 5107 6945 * 6496 * 6388 6825 3093 * 4754 62 30 5615 * 617 1523 * * 8163 1706 0 F 63 5662 4049 3032 4986 3499 2979 4108 * 3573 4991 5394 2597 6433 5136 3821 5211 * 6701 5783 5465 63 16 6465 * 0 * * * 8163 1000 0 G 64 6383 * 3132 4309 * 854 * * 4947 6426 * 3471 * 5159 6608 4006 5357 * * 6496 64 40 5184 * 1297 754 * * 8163 2239 0 K 65 4807 4963 6545 5792 5612 6676 4008 * 2375 6503 * 3554 5675 4796 1696 3467 4812 6634 6664 6383 65 0 * * * * * * 8163 0 0 K 66 5054 6737 5681 5250 5682 6496 5434 4481 2278 5920 * 3806 3581 5641 2173 4864 3800 3657 * 6465 66 14 6653 * 1585 585 * * 8163 1000 0 L 67 * 5467 * * 6433 * * 1564 * 1289 4528 * * * * * * 2514 * * 67 0 * * * * * * 8163 0 0 I 68 4876 6895 3969 4736 5409 * 4764 4415 2772 4472 * 3512 * 4227 2471 4378 3657 3468 * 5756 68 12 6900 * 2585 263 * * 8163 1000 0 L 69 4105 4406 * * 7013 * * 2058 * 3109 6153 * 6695 * * 6951 6273 1040 * * 69 15 6581 * 0 * * * 8163 1000 0 E 70 6482 4963 3368 2322 6354 6914 4671 7044 2836 6280 5644 3687 * 2961 4181 2940 5152 * * * 70 0 * * * * * * 8138 0 0 V 71 5993 * * 5815 2549 * 5244 3814 4290 3104 4050 * 3558 6431 4066 * 5446 4017 4731 2382 71 0 * * * * * * 8121 0 0 S 72 1326 5484 4836 5544 6752 5147 * 6837 5485 6429 * * * * 4893 1830 4884 3936 * 5161 72 0 * * * * * * 8114 0 0 S 73 5682 * 6312 5757 6660 * 5721 * 1758 5036 * 3970 * 3167 2142 4044 3749 4593 * 5941 73 18 6372 * 1000 1000 * * 8061 1000 0 S 74 4079 * 4339 2761 5359 4158 6788 6881 4045 * 6233 4672 2580 5446 3095 2793 4852 5722 * 5166 74 0 * * * * * * 7961 0 0 N 75 4452 * * 4952 * 2408 6485 * 2591 6198 * 2277 6093 2921 3391 4645 4621 6172 * * 75 0 * * * * * * 7756 0 0 A 76 3587 6026 6289 3128 * 5305 * * 2344 5182 5996 5028 3258 4506 2462 3216 5589 5666 * * 76 0 * * * * * * 7623 0 0 R 77 * * * * * * * * 1303 * * * * * 750 * * * * * 77 0 * * 0 * * * 6690 0 0 //