HHsearch 1.5 NAME c2kuoA_ FAM FILE c2kuoA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2kuoA_.a3m DATE Wed Jan 9 15:50:58 2013 LENG 91 match states, 91 columns in multiple alignment FILT 63 out of 67 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.0 EVD 0.5244 2.3345 SEQ >ss_dssp CCCCCCCCCCSTTCCSSCCEECTTGGGCSCCSHHHHHHEECTTCTTCCCCSHHHHCSCTTSCBCTTGGGCCCCCHHHHHHSBCCCCCCCCC >sa_dssp EEEEEEEEEEDECEDEEEBDBADEBEEBEEEDEEBCEDCABDECDBDDCECDCDEDDEEEDEDBEDCDECEEEEEDBDEDDCCCEEEEEEE >ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCHHHHHHCCCCCCCCCCC >ss_conf 9742011000124342437777102457512888887636788777466767778763588885868201016564743102689986569 >Consensus xxxxtxxxxxxsxxxkxxRxxCxyGxxCYRkNpxHxxefsHPxdxDyxxxxxxxxxxxxxxPxCxYGxxCYRkNpxHxxeyxHxxxPxxxx >c2kuoA_ GSKATDSVLQGSEGNKVKRTSCMYGANCYRKNPVHFQHFSHPGDSDYGGVQIVGQDETDDRPECPYGPSCYRKNPQHKIEYRHNTLPVRNV >UniRef50_A4ICK1(176-256:286) Putative uncharacterized protein n=4 Tax=Trypanosomatidae RepID=A4ICK1_LEIIN E=0.0002 s/c=0.58 id=42% cov=26% ------------------------------------------------------------KPKCPYGAHCFRTTEEHFRQYTH-------- >UniRef50_UPI000180B22D(21-84:471) PREDICTED: similar to tyrosyl-DNA phosphodiesterase 1 n=1 Tax=Ciona intestinalis RepID=UPI000180B22D E=9e-07 s/c=0.85 id=37% cov=38% --------PTTIKQRKKSKVLCKFGKKCFRKNPQHFEEYSHP------------------------------------------------- >UniRef50_B3G4H5(1548-1626:1662) Putative uncharacterized protein n=1 Tax=Adineta vaga RepID=B3G4H5_ADIVA E=8e-08 s/c=0.74 id=44% cov=35% --------------------------------------------------------ESHNAPKCKYDKKCKEINdPFHRVEYRHTNLP---- >UniRef50_Q4E4B2(171-216:230) Putative uncharacterized protein n=1 Tax=Trypanosoma cruzi RepID=Q4E4B2_TRYCR E=1e-05 s/c=1.12 id=35% cov=29% ---------------------CPYGSNCFRTGAEHIAEYFHGTEAD--------------------------------------------- >UniRef50_UPI000186CBA1(297-368:414) conserved hypothetical protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186CBA1 E=3e-17 s/c=1.25 id=35% cov=73% ------------------RPMCPYGASCYRLNNKHKVEFRHPagnsnnHNLEQNESTSYTCRSPGEKPPCIYGSNCYRRNSTHRKQFYH-------- >UniRef50_D2VNE5(88-160:1387) Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VNE5_NAEGR E=6e-15 s/c=1.12 id=32% cov=71% ------------------RPKCKYGNTCnqlYDE--KHMKEFSHPFLPPccfKNSCSEYGDEAHKFSHPCRYGSQCRElKDPHHTQYYSHA------- >UniRef50_UPI00017921C7(9-39:508) PREDICTED: similar to AGAP010317-PA n=1 Tax=Acyrthosiphon pisum RepID=UPI00017921C7 E=4e-05 s/c=1.58 id=34% cov=32% ------------------RIPCKYGRKCFQTNKEHTDKYKHPPTKD--------------------------------------------- >UniRef50_A8JR14-2(103-185:187) Isoform A of Aprataxin and PNK-like factor n=3 Tax=melanogaster group RepID=A8JR14-2 E=4e-22 s/c=1.27 id=39% cov=91% -SNAQDAADESTVSSSSIRTSCRFGIRCYRRNPAHRSAEAHPGDQDYRRPNFPAPPL--GTPACPFGNACYRRNPVHFQDYSHPA------ >UniRef50_UPI0000E46C9B(1-30:340) PREDICTED: similar to peroxisomal membrane protein 3, 35kDa (Zellweger syndrome), partial n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E46C9B E=2e-06 s/c=1.78 id=39% cov=34% -----------------------------------------------------------EKPTCKYGPDCYQKSKDHVEKFRHTGSPSK-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 S 2 1154 * * * * * * * * * * * * * * 861 * * * * 2 0 * * * * * * 2250 0 0 K 3 * * * * * * * * 1487 * * 2077 * * 2242 2359 * * * * 3 0 * * * * * * 2250 0 0 A 4 752 * * * * 2242 * 2359 * * * * * * * * * * * * 4 0 * * * * * * 2250 0 0 T 5 * * * * * * * * * * * * * 2187 * * 358 * * * 5 0 * * * * * * 2273 0 0 D 6 * * 956 * * * * * * * * * * * 2385 * 1771 * * * 6 0 * * * * * * 2273 0 0 S 7 1428 * * 2822 * * * * 3433 * * * * * * 2096 2639 * * * 7 0 * * * * * * 2450 0 0 V 8 2922 * * * * * * 2984 * * * * * * 2639 2822 * 1185 * * 8 0 * * * * * * 2450 0 0 L 9 1489 * 3091 3168 * * * * * 3880 * * 1526 * * * * * * * 9 0 * * * * * * 2660 0 0 Q 10 * * 3181 1693 * * * * * * * 3842 * 2101 2825 * 2873 * * * 10 0 * * * * * * 2660 0 0 G 11 3630 * 3320 * * 1843 * * * * * * * * * 1308 2873 * * * 11 0 * * * * * * 2660 0 0 S 12 * * * * 3547 * * 3220 * * * 3131 * 3636 * 951 3394 * * * 12 0 * * * * * * 2731 0 0 E 13 * * 3131 2248 * 3547 * * 2413 * * * * 3143 * * 3223 2460 * * 13 0 * * * * * * 2731 0 0 G 14 * * 1961 3446 * 2020 * * * * * * * 3485 * 2191 3373 * * * 14 0 * * * * * * 2762 0 0 N 15 * * * * * * * * * * * 1086 * * 3579 1443 3691 * * * 15 0 * * * * * * 2879 0 0 K 16 * * * * * * 3895 3720 682 * * * * * * 2708 3637 * * * 16 0 * * * * * * 2879 0 0 V 17 * * 3412 * * * * 3184 2737 4241 4258 3700 3970 3135 * 3667 3862 2850 * * 17 163 3225 * 1117 892 * * 2840 1439 0 K 18 * * * * * * * 3844 2072 2857 * * * 2766 2597 2984 3109 * * * 18 0 * * * * * * 2748 0 0 R 19 * * * * * * * * 1733 4648 * * * * 601 * * * * * 19 34 5433 * 2000 415 * * 3282 1000 0 T 20 5280 * 5124 3144 * * * 3575 5433 * 5176 4858 1225 * * 4648 2849 4142 * * 20 0 * * * * * * 3282 0 0 S 21 5177 * 4228 5166 * * * * 3655 3926 4925 * 1695 5256 5012 1959 4294 4682 * * 21 0 * * * * * * 3299 0 0 C 22 * 0 * * * * * * * * * * * * * * * * * * 22 0 * * * * * * 3226 0 0 M 23 5579 * 4657 5109 5854 * * * 1753 * 4161 * 1839 3445 3612 * * 5017 * 4144 23 29 5639 * 2807 222 * * 3226 1000 0 Y 24 * * * * 1718 * * * * * * * * * * * * * * 523 24 0 * * * * * * 3226 0 0 G 25 * * * * * 66 * * 4475 * * * * * * * * * * * 25 0 * * * * * * 3226 0 0 A 26 2004 * 5886 3153 * * * 2893 2804 5579 * 4250 4453 * 3733 3617 5631 4397 * * 26 0 * * * * * * 3226 0 0 N 27 4241 * 4532 3822 * 4936 * * 1701 5942 * 2967 * * 2804 3257 3305 * * * 27 0 * * * * * * 3226 0 0 C 28 * 0 * * * * * * * * * * * * * * * * * * 28 43 5090 * 1585 585 * * 3226 1000 0 Y 29 * * * * 3366 * * 4361 * * * * * * * * * * * 227 29 0 * * * * * * 3226 0 0 R 30 * * 3680 * * * * * * * * * * 2712 378 * * * * * 30 72 4361 * 0 * * * 3226 1000 0 K 31 4686 * * 5137 * * 3798 * 863 5249 * * * 5463 2669 * 3254 * * * 31 42 * 5137 * * * * 3277 0 0 N 32 * * * * * 3854 * * * * * 467 * * 5196 2981 4230 * * * 32 0 * * * * * 0 3269 0 1000 P 33 3135 * * 5744 * 5486 * * 3058 4400 * 5174 982 4649 4111 * * 4438 * * 33 0 * * * * 0 * 3269 0 1000 V 34 3213 * 2718 2315 * * * 4033 3029 5189 * 5071 * 3383 5691 5307 4602 3098 * * 34 0 * * * * * * 3277 0 0 H 35 * * * * * * 61 * * * * 4602 * * * * * * * * 35 0 * * * * * * 3277 0 0 F 36 * * * * 1869 * 4655 4253 4352 2693 3719 4602 * * 2288 * 4669 3853 * * 36 0 * * * * * * 3277 0 0 Q 37 2773 * 4154 2895 * 5309 * 6198 2815 4602 5189 4706 * 3488 4258 3850 3169 4230 * * 37 0 * * * * * * 3277 0 0 H 38 4382 * 4784 976 * * 4696 * 2819 4686 * 5499 * 3542 5496 4103 * * * * 38 0 * * * * * * 3277 0 0 F 39 * * * 3899 1064 * * * * 5071 4500 * * * * 5657 * * * 1470 39 0 * * * * * * 3277 0 0 S 40 2151 5415 5489 * 5107 * * * 3064 * * * * * 3425 1217 * * 5718 4712 40 0 * * * * * * 3277 0 0 H 41 * * * * * * 0 * * * * * * * * * * * * * 41 80 4212 * 2000 415 * * 3277 1000 0 P 42 * * * 5106 * 3820 * * * * * * 214 * * * 4723 * * * 42 60 4621 * 2585 263 * * 3181 1000 0 G 43 4386 * * 4486 4107 1237 2752 * 4809 * * 3903 3985 * * 4083 4258 * * * 43 0 * * * * * * 3332 0 0 D 44 3353 * 839 2666 * * * * * 4061 * 4293 * * * * 3746 * * * 44 0 * * * * * * 3275 0 0 S 45 2147 * 4106 * * 3892 * * 3746 3352 * * 2941 4960 4298 2146 * 4747 * * 45 45 * 5016 * * * * 3275 0 0 D 46 * * 363 3458 * * * * * * * * 4045 * * * 3815 * * * 46 111 3751 * 1585 585 * 0 3276 1000 1000 Y 47 * * * * 4233 * * * 2467 * * * * 3831 * * 3156 * * 777 47 80 * 4210 * * 0 * 3308 0 1000 G 48 * * * 4390 * 1826 * * 4631 * * 2575 * * 1636 4071 4689 * * 4573 48 171 4071 4265 2000 415 * 0 3247 1000 1000 G 49 * * 4580 2597 * 3306 * * 3943 * * * * 3341 1876 1967 * * * * 49 98 3928 * 0 * * 0 3204 1000 1457 V 50 3943 2375 * 4543 * 3928 * * * * * * 1441 * * 3676 3541 3306 * * 50 140 * 3431 * * * 0 3204 0 1457 Q 51 4406 * 2774 * * 4335 * 4424 3253 * * 2047 * 3018 * 3330 2829 * * * 51 0 * * * * * 0 3170 0 1793 I 52 * * * 2521 1310 * * 3698 * 3808 * * * * * 2846 * 2889 * * 52 149 * 3346 * * 1814 483 3170 0 1793 V 53 * * * * * 3671 * * * * 3531 * 1833 * * 3011 2770 3423 * 2392 53 0 * * * * * 0 3158 0 2050 G 54 2568 3694 2063 * * 2311 * 4326 * * * 4382 3766 * * * 2817 * * * 54 0 * * * * 698 1383 3158 0 2050 Q 55 * 3676 3410 2692 * * * * * * * 3341 1876 2419 * 4326 * 3943 * * 55 150 3341 * 2000 415 939 1064 3204 1000 1457 D 56 4068 * 2033 2732 * * * * 3461 * * * 1782 * 3835 4586 * 4261 * * 56 0 * * * * * 0 3300 0 1000 E 57 2754 * 3061 1702 * * * * * 3455 * 4190 3257 * * 2523 * * * * 57 138 * 3455 * * * 0 3459 0 1000 T 58 3527 * 2506 3858 3629 4201 3480 * * * * 4907 3277 * * 3589 2874 5187 * 4060 58 0 * * * * 1715 524 3374 0 1506 D 59 * * 1593 3474 * 4196 3660 * 3566 * * 3601 * * * 3010 * 3315 * 4228 59 0 * * * * 0 * 3329 0 1186 D 60 * * 1990 3248 3734 2965 3601 * * * * 2278 4730 * * 4495 3856 * * * 60 0 * * * * * * 3223 0 0 R 61 3418 * * * * * * * 1583 3763 * * * 4410 1630 4042 3874 * * * 61 0 * * * * * * 3212 0 0 P 62 * 5147 4756 4931 * * 4042 * * * * * 409 * * * 4304 4736 * * 62 0 * * * * * * 3212 0 0 E 63 3651 * 4666 2401 * * 4603 * 2755 4257 4957 * 2266 3742 5142 5517 3984 5517 * * 63 41 * 5169 * * * * 3215 0 0 C 64 * 0 * * * * * * * * * * * * * * * * * * 64 0 * * * * * 0 3203 0 1000 P 65 5175 * * 4262 * * * 5004 1726 * * * 1410 4030 3167 * * * * 4719 65 0 * * * * 0 * 3203 0 1000 Y 66 * * * * 2390 * * * * * * * * * * * * * * 305 66 0 * * * * * * 3216 0 0 G 67 * * 3648 * * 120 * * * * * * * * * * * * * * 67 0 * * * * * * 3216 0 0 P 68 1829 * 5366 5615 * 4362 * * 3332 4376 * 3475 3677 * 5298 2727 3353 4826 * * 68 0 * * * * * * 3216 0 0 S 69 3397 * 3351 3252 * 5664 4626 * 2383 5564 * 2757 * 4067 5215 2362 * * * * 69 0 * * * * * * 3216 0 0 C 70 * 0 * * * * * * * * * * * * * * * * * * 70 0 * * * * * * 3216 0 0 Y 71 * * * * 4052 * * * 4342 * * * * * 3207 * * * * 355 71 0 * * * * * * 3216 0 0 R 72 * * * 2666 * * * * * * * * * 3220 444 * * * * * 72 89 4067 * 0 * * * 3216 1000 0 K 73 * * * * * * * 3352 924 5017 * * * 4697 2205 * 3497 * * * 73 0 * * * * * * 3216 0 0 N 74 * * 4067 * * * * * * * * 367 * * 4782 3502 4626 * * * 74 73 4342 * 0 * * * 3216 1000 0 P 75 5366 * 3659 4626 * * * * 3972 3941 * 5017 587 * * 5031 * * * * 75 0 * * * * * * 3216 0 0 Q 76 4697 * 3339 2245 4342 * 4067 4625 4104 4047 * * * 1810 5298 * 5031 4561 * * 76 72 4362 * 0 * * * 3216 1000 0 H 77 * * * * * * 0 * * * * * * * * * * * * * 77 0 * * * * * * 3216 0 0 K 78 * * * * 1568 * 4813 * 2515 3273 5146 * * * 2671 * 2947 4885 * * 78 0 * * * * * * 3196 0 0 I 79 5529 * 5030 2770 * 5597 * 4157 2717 5827 * 5384 * 2515 2269 * 5023 3088 * * 79 0 * * * * * * 3196 0 0 E 80 * * 3263 1015 5023 * * * 3204 * * * * 2524 * 5182 * * * 4054 80 0 * * * * * * 3196 0 0 Y 81 * * * * 1190 * * * * * * * * * * * * * * 832 81 0 * * * * * * 3196 0 0 R 82 4676 * 4155 4350 * * * * 2858 * * * * 4611 2268 1746 4070 * * 3165 82 0 * * * * * * 3196 0 0 H 83 * * * * * * 0 * * * * * * * * * * * * * 83 191 * 3011 * * * * 3196 0 0 N 84 2808 * 4438 * * * * * * * * 4947 2085 * * 2529 1436 * * * 84 0 * * * * * 0 2901 0 1450 T 85 2031 * * * * 2428 2934 * 3022 * * 3047 * * * * 2754 4436 * * 85 0 * * * * * 0 2742 0 1450 L 86 * * 2985 * 4168 * * * 2742 1674 * * 2768 * * 2263 * * * * 86 0 * * * * 0 * 2526 0 1450 P 87 * * * * * * * * * * * * 0 * * * * * * * 87 0 * * * * * * 2622 0 0 V 88 2873 * * * * * * * * * * * 1887 * * 2646 * 1206 * * 88 0 * * * * * * 2128 0 0 R 89 * * * * 2873 * * * 1724 * * * * * 834 * * * * * 89 0 * * * * * * 2128 0 0 N 90 * * * * * * * * * * * 1618 * * * 1098 2270 * * * 90 0 * * * * * * 1897 0 0 V 91 * * * * * * * 815 * * * * * * * * * 1212 * * 91 0 * * 0 * * * 1739 0 0 //