HHsearch 1.5 NAME c2kreA_ FAM FILE c2kreA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2kreA_.a3m DATE Sun Aug 29 00:38:40 2010 LENG 100 match states, 100 columns in multiple alignment FILT 136 out of 543 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.0 EVD 0.4453 0.9461 SEQ >ss_dssp CCCCSSSCCCCSCSCSSCSSCSCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTCCCC >sa_dssp EDEDEDEEEEEEEEEEDEEDDDBCDBDEEBDADECDDCAECBCEAECDCDBACDCAEEBCEECDDACDDEEEBDDDEBEEBEECCECADDCBEECCEDEE >ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHCHHHCCCCCEECHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC >ss_conf 9259999999999643543564206984346655289874842344875333999999986289877661000110012759999999999986120579 >Consensus xxxexxekxkexxxxxxxxxxxxxxxpxxxxcpIxxxlmxdPVxxpxGxtxxrxxIxxxlxxxxxcPxtxxplxxxxlxpNxxLrxxIxxxxxxxxxxxx >c2kreA_ GSHKFAEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQNSDH >UniRef50_Q24HM6(157-252:276) Cluster: U-box domain containing protein; n=1; Tetrahymena thermophila SB210|Rep: U-box domain containing protein - Tetrahymena thermophila SB210 E=7e-11 s/c=0.71 id=18% cov=93% ---EETKKKQVLLLKETLIEEENRKIPEYYLCKLTNKILQDPVTTKYCNTYEKKELEDYFKTVKSirDPQNQQLLQNpiTDILPNINLKKAIEEFIDLQ- ---- >UniRef50_UPI000069FE20(6-89:340) Cluster: Tripartite motif protein 25 (Zinc finger protein 147) (Estrogen- responsive finger protein) (Efp) (RING finger protein 147).; n=1; Xenopus tropicalis|Rep: Tripartite motif protein 25 (Zinc finger protein 147) (Estrogen- responsive finger protein) (Efp) (RING finger protein 147). - Xenopus tropicalis E=0.0003 s/c=0.55 id=13% cov=23% ----------------------------------------------------------------------------ELTRNLTLRNIVDKVRLTQKES-- >UniRef50_Q00W57(230-304:559) Cluster: Chromosome 14 contig 1, DNA sequence; n=1; Ostreococcus tauri|Rep: Chromosome 14 contig 1, DNA sequence - Ostreococcus tauri E=2e-06 s/c=0.70 id=11% cov=28% -----------------------------------------------------------------DPLTNEPVMDRKVYTNWDKRREVAEWL-------- >UniRef50_Q6CHE1(264-360:470) Cluster: Similar to sp|P35728 Saccharomyces cerevisiae YKL059c; n=1; Yarrowia lipolytica|Rep: Similar to sp|P35728 Saccharomyces cerevisiae YKL059c - Yarrowia lipolytica (Candida lipolytica) E=0.0009 s/c=0.45 id=19% cov=91% ------QKARARHAVEDTKAKRKADIDPELVCPLSKKLFDHPVTTPCCKtTYSEDAIQQALLDGDFvcPKCGAEEILLDQLHPDKEMEKRVKEHIKKEQ- --- >UniRef50_Q7ZX20(352-423:540) Cluster: Rnf8-prov protein; n=5; Tetrapoda|Rep: Rnf8-prov protein - Xenopus laevis (African clawed frog) E=0.001 s/c=0.61 id=19% cov=27% --QETKEEKEKVFAQKEEVLNHMNDVLD------------------------------------------------------------------------ >UniRef50_A7RKF3(6-75:299) Cluster: Predicted protein; n=1; Nematostella vectensis|Rep: Predicted protein - Nematostella vectensis (Starlet sea anemone) E=7e-07 s/c=0.78 id=18% cov=71% -------------------ERFLDPVEDDFKCGICFGVLEDPLVTTCGHVFCSQCLVHWIAENGTCPLTCEQLAIDDLKKIPPLTRLIS----------- >UniRef50_UPI00005849D1(417-500:863) Cluster: PREDICTED: similar to postreplication repair protein hRAD18p; n=1; Strongylocentrotus purpuratus|Rep: PREDICTED: similar to postreplication repair protein hRAD18p - Strongylocentrotus purpuratus E=5e-06 s/c=0.61 id=20% cov=41% -------------------------------------------------------IRRHMNYKNQCPTCNTPAEVSQLCNNRALDELVSNFKAVR----- >UniRef50_A8P533(304-391:711) Cluster: Putative uncharacterized protein; n=1; Coprinopsis cinerea okayama7#130|Rep: Putative uncharacterized protein - Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) (Inky capfungus) (Hormographiella aspergillata) E=0.0003 s/c=0.52 id=16% cov=25% --EEMKKRFKDRAVQRMEAEKQSADA-------------------------------------------------------------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 1885 * * * * 456 * * * * * * * * * * * * * * 1 0 * * * * * * 3004 0 0 S 2 2747 * 2526 * * * * * * * * * * * * 1001 2491 * * * 2 0 * * * * * * 3712 0 0 H 3 * * 3968 1620 * * 4332 * * * * 2059 * 1639 * * * * * * 3 0 * * * * * * 6310 0 0 K 4 * * * 1071 * * * * 3078 * * * * 2356 2668 4241 * * * * 4 0 * * * * * * 7147 0 0 F 5 * * * 3381 2649 * * 2434 4497 1708 3589 * * 4551 4602 * 4563 * * * 5 0 * * * * * * 7682 0 0 A 6 2613 * 4577 3636 * * * 2474 2851 2966 * * * * 4425 3485 4341 3601 * * 6 0 * * * * * * 7682 0 0 E 7 * * 2775 1464 * * * * 2561 * * * * 2248 3700 4862 * * * * 7 0 * * * * * * 8098 0 0 K 8 5309 * * 3935 * 4703 * 4427 1196 3412 * * * 3033 3105 4938 5431 * * * 8 0 * * * * * * 8474 0 0 V 9 2518 * * 5092 4115 * * 3054 3176 1937 * * * * * * 5484 2159 * * 9 0 * * * * * * 8568 0 0 E 10 * * 4000 2069 5188 5121 4991 * 1896 * * * * 3584 3034 3536 * 4286 * * 10 0 * * * * * * 8725 0 0 E 11 3072 * 3583 1788 * 4790 5025 * 3043 * * 4687 * 3352 5131 5309 3706 4248 * * 11 0 * * * * * * 8725 0 0 I 12 5674 4524 * 3071 3885 * 4893 2965 2940 3629 4136 5192 * 5271 3774 5272 * 2780 * 5459 12 0 * * * * * * 8985 0 0 V 13 4319 5140 * 4330 3366 4150 4922 5414 2511 3346 5164 4042 6558 * 3708 3645 5665 3987 * 4328 13 0 * * * * * * 9202 0 0 A 14 2554 * 4155 3497 * 4979 * * 3385 4454 5868 5135 4064 3839 5133 3029 3544 3322 * * 14 0 * * * * * * 9188 0 0 K 15 * * 5403 2612 * * 4422 * 3402 4130 * 4091 * 2275 2773 3289 5425 4360 5133 * 15 15 * 6565 * * * * 9188 0 0 N 16 3488 * 3310 3064 3736 * 4591 4876 3449 3207 5446 3776 5868 5787 3546 * 3812 5339 * 5195 16 70 4393 * 2520 276 * 0 9332 1772 1000 A 17 2368 * 4488 1897 * 4770 * * 3549 5359 5544 * 4476 4228 3514 3408 5642 5301 * * 17 61 4605 * 1000 1000 * 0 8581 1000 1000 R 18 4222 * 3752 2565 * 4120 5096 4188 4494 3827 4081 5498 5546 2444 3207 * 4262 * * * 18 17 6406 * 1585 585 * 0 8581 1000 1000 A 19 3443 * 3975 2443 * * * 4405 2637 3903 5049 4440 4316 * 4091 3304 4397 4266 * * 19 22 * 6073 * * * 0 6015 0 1000 E 20 4044 * 3201 1226 * * * 4839 * 3794 * 4184 4390 3351 * 5553 5237 5153 * 5683 20 106 3814 * 2262 337 * 0 5891 2284 1588 I 21 4511 * 2849 1938 * * * 3306 2598 3171 * 6621 5072 4298 5335 4488 5719 * * * 21 48 4934 * 2184 359 878 1134 5891 1717 1588 D 22 3712 * 2246 2469 5373 * 4339 4952 * 4293 5840 3751 5395 5908 3426 4538 4168 4276 * * 22 0 * * * * * 0 5790 0 1000 Y 23 3599 * 6124 * 3274 5900 * 3824 4336 2167 4711 3744 5004 5452 5261 5580 6033 3683 4265 3620 23 65 * 4507 * * 0 * 5792 0 1000 S 24 4055 * 4601 3755 5515 2073 * * 5704 3404 5638 4652 4605 * 4688 4530 3697 2595 5280 * 24 86 5024 5193 1661 548 983 1017 5638 1808 1699 D 25 5712 5700 1695 1991 * 4729 * * 3405 * * 3416 4799 4542 5844 5397 5972 4661 * * 25 144 4514 4281 3317 153 0 * 5671 2062 2037 A 26 3549 * * * 6612 5175 6261 1824 4554 3956 * * 3152 5328 * 3582 5139 2359 * 5061 26 0 * * * * * 0 5268 0 2080 P 27 * * 5238 4271 * * * * 6213 4452 5136 * 407 * 5997 4593 5442 * * * 27 0 * * * * 560 1637 5345 0 2080 D 28 4928 * 1757 1902 * 4667 6052 6133 5369 5774 * 4355 3647 3757 4605 4658 * 6768 * * 28 0 * * * * * 0 5349 0 1000 E 29 3814 5317 2530 1642 6857 6112 3769 5595 5124 * * 6283 * 5003 5775 4223 4503 5890 6229 3750 29 118 3675 * 1415 678 0 * 5739 2639 1000 F 30 6252 * * * 1139 * * 5492 * 1674 * * * * 5243 * 5700 5406 * 2965 30 0 * * * * * * 5774 0 0 R 31 5324 4347 * 4099 5238 * 5972 2198 3933 2299 5142 5486 * 4095 3592 * 4186 3451 * * 31 0 * * * * * * 5774 0 0 D 32 * 307 2385 * * * * * * * * * * * * * * * * * 32 0 * * * * * * 5811 0 0 P 33 3511 6065 6448 * * 6451 5949 4819 5112 * 6348 5921 618 5690 6685 4685 4615 7713 * * 33 0 * * * * * * 6293 0 0 L 34 * * * * 6016 * * 663 * 1556 * * * * * * * 6263 * * 34 0 * * * * * * 6433 0 0 M 35 * 1751 5154 * 6156 * * * 6220 5496 5427 6152 * * * 1743 1790 * * * 35 18 * 6347 * * * * 6433 0 0 D 36 6478 5559 6356 5775 3789 2726 3776 * 2810 3002 4976 5149 * 3287 3325 3960 6034 * * 4986 36 0 * * * * * 0 6439 0 1000 T 37 4714 6201 3352 2117 6019 3300 * 6273 3427 5753 5967 4097 * 4142 5951 4147 2765 5179 * * 37 0 * * * * * 0 6439 0 1000 L 38 * * * 5621 6142 6422 * 2070 * 1181 * * 4611 * * * * 2137 * 7255 38 0 * * * * 0 * 6866 0 1000 M 39 * * * * 3184 * * 3767 * 2352 865 * 7168 * * * 6454 5957 * 4753 39 0 * * * * * * 6869 0 0 T 40 5390 5438 4631 3051 * * * 4790 2597 5802 6941 4484 * 4761 2457 5117 2883 3553 5954 4835 40 0 * * * * * * 6703 0 0 D 41 * * 738 3055 * * 4944 5575 6694 * * 2952 * 4614 6329 * 5630 6136 * * 41 16 6502 * 1585 585 * * 6703 1000 0 P 42 2934 * * * * 6071 * * * * * * 227 * * * * * * * 42 13 6786 * 0 * * * 6919 1000 0 V 43 3878 6940 6046 * * * 6536 4074 * 4775 4771 * * 8212 * * 5190 512 * 4908 43 49 4890 * 0 * * * 6919 1795 0 R 44 6581 4899 * 6710 6230 * * 2188 4286 3056 3634 6192 * 3869 5467 5151 2804 2430 * * 44 39 5242 * 2535 273 * * 6920 1500 0 L 45 3448 4425 6439 * 5828 5877 * 4007 * 1607 * 6819 * * * 4052 1649 4752 * * 45 41 5170 * 605 1546 * * 6920 1705 0 P 46 3700 4216 7317 4896 6161 5940 * * 4331 * 6072 4766 1048 4942 6797 3012 5200 6533 * 6567 46 135 3488 * 0 * * * 6920 3745 0 S 47 5035 1425 3084 6634 * 6665 * * * * * 4780 6317 5306 * 2117 3177 6334 * 4991 47 0 * * * * * * 6911 0 0 G 48 6273 5183 4774 5041 5882 453 * * 5193 * * 4793 * 6346 6717 4335 6583 * * * 48 0 * * * * * * 6911 0 0 T 49 6531 * 5446 5745 3830 * 1296 6194 3918 6646 6747 4550 6273 3395 4459 * 3701 5792 * 3648 49 59 5058 6654 3667 118 * * 6911 2381 0 I 50 5668 4995 * * * * * 3017 * 6551 * 5036 * 6098 5250 2267 1296 3105 * 6361 50 11 6993 * 0 * 0 * 6810 1000 1000 M 51 * 6220 * * 1271 * 5792 5151 * 6052 5311 * * * * * * 3881 * 1259 51 0 * * * * * * 6821 0 0 D 52 * 1773 2180 1381 * 4749 6738 * * * * 6664 * 6548 * 4809 * * * * 52 0 * * * * * * 6821 0 0 R 53 5073 * 5917 4422 4764 5460 4953 * 2078 5011 * 6652 * 3629 1393 4215 * 6476 * 6534 53 9 * 7312 * * * * 6819 0 0 S 54 3335 6353 2710 2477 5882 4233 6730 4820 4066 5501 6753 6218 6444 4371 4280 2724 4277 7264 6926 6996 54 0 * * * * * 0 6822 0 1000 I 55 2310 1407 * 5444 5323 5475 * 6004 * 4319 * 6786 * 6753 * 4002 3383 4329 6989 4299 55 31 6926 6270 0 * * 0 6822 1000 1000 I 56 6070 * * * 6367 * * 760 * 1865 * * * 5530 * * * 3534 * * 56 10 * 7189 * * 872 1140 6814 0 1624 L 57 5818 6221 4022 2571 5520 6471 * 4489 4495 2983 4522 4635 * 3201 3077 4390 4633 4435 * 4463 57 15 6613 * 2585 263 0 * 6842 1000 1523 R 58 3674 * 3989 2953 * 5401 5461 * 2261 6543 * 3503 6589 2892 2849 4639 4635 6465 * * 58 0 * * * * * * 6834 0 0 H 59 3335 4196 * * 4914 * 2600 6510 5486 5374 * 7023 * 4655 5503 5439 6025 5807 1448 3343 59 67 5619 5305 614 1528 * * 6834 1719 0 L 60 5780 * * 5846 3089 * * 2903 4993 922 5342 6490 * 5524 * * 6682 3966 5451 * 60 123 3612 * 715 1355 956 1045 6802 3516 1650 L 61 3297 6926 3566 3112 6441 4963 4879 4139 3422 3092 4939 4034 * 3876 3465 4515 4990 * 5834 * 61 68 4438 * 1000 1000 * 0 6724 2803 1000 N 62 5206 * 4064 3583 * 4012 3876 6526 3683 4861 * 2657 * 3673 2950 3282 3866 6625 * 5130 62 102 3873 * 1354 716 0 * 6724 3370 1000 S 63 3997 * 4090 4569 * 2276 3601 * 3973 * 4899 2693 * 4052 6366 2835 4185 6416 * 5917 63 73 4350 * 581 1592 * * 6797 2568 0 P 64 3746 6731 3875 3854 5688 2802 3735 * 3215 4252 6429 4735 2718 4178 4847 3713 * * * 6243 64 158 3447 6414 1485 638 * * 6802 3497 0 T 65 4376 5367 * 4296 5000 * 4619 4224 2982 6441 5900 3366 * 4829 4855 4041 1736 3860 * * 65 99 3915 * 1200 824 0 * 6774 3576 1000 D 66 4836 1056 1737 * * * 6985 * 6281 * * 6553 4422 * * 3239 * * * * 66 0 * * * * * * 6806 0 0 P 67 5498 * 5450 * 6498 5769 * * 4960 * * * 282 * * 6426 5170 5833 * 6155 67 10 * 7234 * * * * 7554 0 0 F 68 5783 3725 * 4201 3137 6823 6750 2867 4705 2371 5014 6690 * 4443 * * 3319 2868 * 5180 68 31 6342 6767 737 1321 * 0 8113 1639 1000 N 69 5248 1732 3429 * * 5010 6355 * * * * 4343 6011 5860 * 3489 1452 * * * 69 25 5855 * 3700 115 1000 1000 8119 1000 1375 R 70 4476 5276 5290 5278 * 2608 5340 * 3368 6163 * 2874 * 4715 1517 4194 * * * * 70 24 5914 * 2344 316 0 * 8140 1549 1000 Q 71 3293 * 6414 2651 * 6881 4967 * 2875 3986 * * * 2489 4188 3479 3246 4282 * 7042 71 19 7249 7313 0 * * * 8148 1000 0 T 72 5307 * 5461 3633 * * * 6320 3685 5557 * 4512 1156 3839 6623 3638 4367 4433 * 6340 72 0 * * * * 0 * 8150 0 1000 L 73 4758 5143 6222 * 2975 * * 2530 5857 1156 5805 * * * * 5946 5682 3301 * * 73 47 4955 * 1843 471 * * 8148 1658 0 T 74 4475 * 5145 4408 * 4213 * 7349 3969 5021 6672 3549 4007 4341 3745 2135 2675 5074 6368 5836 74 29 * 5630 * * * * 8148 0 0 E 75 4042 * 4131 3012 6667 6259 4966 4373 5510 3567 4298 4499 3214 5669 2765 3935 4303 4745 * 5277 75 43 5375 7640 505 1759 0 * 8136 2299 1949 S 76 4155 * 2503 3146 4410 4729 6689 6221 3477 5559 * 3312 5646 4611 4011 2912 4243 5843 * 6812 76 92 4723 5393 2313 324 * 0 8146 2464 1000 M 77 4130 5815 2141 3339 * * 6028 5968 2958 4406 6062 4632 6554 2792 4956 3584 4256 6144 * * 77 39 5211 * 0 * 0 * 7754 2130 2054 L 78 4287 5157 * * 6660 * 6762 3786 * 814 5169 * 4308 * 5875 5353 5170 3394 * 5817 78 0 * * * * * * 7752 0 0 E 79 5539 5929 * 6137 4533 6830 5319 2322 3548 3738 * 5977 6418 4729 2901 4733 3917 2685 * 4267 79 12 * 6889 * * * * 7752 0 0 P 80 5168 * 6032 5452 * 6620 5446 4597 5307 5792 * 5022 790 5757 7501 5216 5014 3327 * 5292 80 12 6906 * 0 * 0 * 7529 1000 1000 V 81 4725 * 3180 5426 5730 * 5486 5675 * 6850 5576 658 6523 6993 * 4364 * 4750 * * 81 0 * * * * * * 7566 0 0 P 82 4064 6406 4934 4496 5636 * 3682 3859 3328 3020 5707 4175 3275 5844 3345 5948 4515 4810 5118 4519 82 0 * * * * * * 7621 0 0 E 83 2514 * 3965 2961 5001 5811 5318 5726 4153 3684 * 4506 4381 4656 4222 3459 3554 4504 * * 83 15 6560 * 0 * * * 7619 1000 0 L 84 4619 * * * * * * 3663 5453 650 3232 * * * * 6029 * 3346 * * 84 0 * * * * * * 7626 0 0 K 85 5471 6245 5305 4331 * * * * 2021 5335 * 3949 * 3428 1387 4965 5872 6805 * 5635 85 0 * * * * * * 7630 0 0 E 86 3162 * 3783 2948 * 6211 5847 5305 3043 * * 3408 * 2523 3068 3300 5674 * * * 86 0 * * * * * * 7681 0 0 Q 87 2374 * * 3327 5670 5295 * 3957 3616 2529 4703 * * 3664 3741 5756 4111 4034 * 6209 87 0 * * * * * * 7682 0 0 I 88 3945 4925 * * * * * 735 * 4900 * * * * * 5898 6395 2064 * * 88 0 * * * * * * 7682 0 0 Q 89 3727 * 3370 1812 * 5753 4900 * 5007 4656 5433 3363 * 3342 6291 2589 5497 * * * 89 0 * * * * * * 7668 0 0 A 90 2442 * 3244 2290 * 4759 5766 5638 3863 6212 * 4007 * 4368 2848 3537 6292 * * * 90 13 * 6821 * * * * 7539 0 0 W 91 5773 * * * 1732 * 5079 4589 * 3391 5174 * * * * * * 6599 1791 2417 91 13 * 6782 * * 0 * 7569 0 1000 M 92 6175 4782 * 6178 5885 * * 3229 1914 1909 5667 * * 4666 2680 * * 3929 * * 92 0 * * * * * 0 7377 0 1000 R 93 3612 * 4949 1923 * * 5824 * 3432 3615 5857 4319 5423 4446 3357 4488 4011 3479 * * 93 0 * * * * 0 * 7293 0 1000 E 94 3822 * 4697 1745 * * * * 2647 5638 * 4918 * 2571 4177 5794 3843 4499 5373 * 94 28 5685 * 0 * * * 7087 1000 0 K 95 * 3747 * 3385 * * * * 3133 * * 3973 * 1931 1669 * 4814 * * 4646 95 0 * * * * * * 6841 0 0 Q 96 4038 * 3478 4847 * * * * 2350 4489 * * 4760 1820 5121 2807 3603 * * * 96 0 * * * * * * 6352 0 0 N 97 4495 * 3380 4612 * 4535 4357 * 3730 * * 1610 * * 3372 3565 2809 * * * 97 0 * * * * * * 6384 0 0 S 98 1474 * * 4082 * * * * 2424 4183 * * * * 4298 2687 4139 3705 * * 98 0 * * * * * * 5942 0 0 D 99 * 3297 965 2238 * * * * * * * 2524 * * * * * * * * 99 0 * * * * * * 5082 0 0 H 100 * * * * * * 0 * * * * * * * * * * * * * 100 0 * * 0 * * * 2270 0 0 //