HHsearch 1.5 NAME c2krbA_ FAM FILE c2krbA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2krbA_.a3m DATE Sat Aug 28 21:10:36 2010 LENG 81 match states, 81 columns in multiple alignment FILT 106 out of 6030 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.8 EVD 0.4591 1.9178 SEQ >ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCCC >sa_dssp EDDADADDADDDDEEEEEDBDDDACEDADECCEBEDDDCDDEEEEECDDACACAECDECAECACEEBECBECEEEEEBEAE >ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHHCCCEECCCCEEEEC >ss_conf 948999885888730144209999999974198068897177767687489988799999999998489462785056529 >Consensus xxxixVxnlPxxxxxxxxxxexxlxxxFxxxGxvxxxxixxxxxxxxgxxfvxfxxxxxAxxAixxlngxxlxxxxxlxVx >c2krbA_ DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN >UniRef50_C7YT85(676-747:1061) Putative uncharacterized protein (Fragment) n=1 Tax=Nectria haematococca mpVI 77-13-4 RepID=C7YT85_NECH7 E=2e-05 s/c=0.70 id=19% cov=89% DLTVYVANFPPVADEAY------IRNLFKDCGEILSVRWPsLKVNSHRRFCYISFRDREASANAVNK-EGKVLEGRYKL--- >UniRef50_Q4P7M8(150-224:307) Putative uncharacterized protein n=2 Tax=Ustilaginomycotina RepID=Q4P7M8_USTMA E=6e-07 s/c=0.74 id=19% cov=91% -SKIILSNLP------LDVTEAQVKELFAtTIGPLRKVAMSyRATGQSTGVCTVEFQRADDAGRAYTQYNNRLIDGKKPLKV- >UniRef50_Q6FTW8(276-355:678) Similar to uniprot|P53316 Saccharomyces cerevisiae YGR250c n=1 Tax=Candida glabrata RepID=Q6FTW8_CANGA E=0.001 s/c=0.56 id=16% cov=95% -NCVFIGNLPTDIQNEGE-FIDDLTEAFPSV-TVISYYFPYDHslNQYKGYGFIKLQNNDQARRIIHEIstDCFEFCGNHIIA-- >UniRef50_D1ZMD3(345-413:552) Whole genome shotgun sequence assembly, scaffold_58 n=3 Tax=Sordariomycetes RepID=D1ZMD3_SORMA E=0.0001 s/c=0.69 id=16% cov=60% -----------------------LNAIFVGYHIVSSKILRDSMGNSRGVGFARFETRDECEDVIKKFHGAP---------- >UniRef50_Q6C007(187-260:382) Pre-mRNA-splicing factor CWC2 n=1 Tax=Yarrowia lipolytica RepID=CWC2_YARLI E=3e-05 s/c=0.67 id=20% cov=93% --TLYVGRIHVSDAAKAGALDEIVSRHFSEWGDVDRIRVLHD----KGVAFVTYATEVNAQFAKEAMAHQSLDSGEVLNV- >UniRef50_A2EJD0(86-157:177) Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2EJD0_TRIVA E=9e-05 s/c=0.67 id=16% cov=69% -----------------------LQELVSQFQPVEVNLIRENDGERSGFGYAKFANSEVRDMVINTLNNKELGNQRIL--- >UniRef50_UPI0000524562(277-347:359) PREDICTED: similar to MEChanosensory abnormality family member (mec-8) n=1 Tax=Ciona intestinalis RepID=UPI0000524562 E=0.0006 s/c=0.64 id=20% cov=63% --------------------EKELKDIFSRFHGYVRAKLINRGGML--CAVVEFTDAGTASYALHSLQGTRL--------- >UniRef50_B7Q142(47-117:346) Ribonucleoprotein, putative n=1 Tax=Ixodes scapularis RepID=B7Q142_IXOSC E=5e-05 s/c=0.69 id=12% cov=62% -----------------------LCRLFEPYSRVQELVIVrRPEFKTHCFGYVLLDSDDDTKLAIQQLNGTLF--------- >UniRef50_B5X232(444-514:520) Polypyrimidine tract-binding protein 2 n=16 Tax=Eumetazoa RepID=B5X232_SALSA E=0.0003 s/c=0.65 id=18% cov=41% -------------------------------------------------ALLQMSTVEEAIQGLIDLHNYNMGDNHHLRVS # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * D 1 * * 1041 960 * * * * * * * * * * * * * * * * 1 0 * * * * * * 4956 0 0 S 2 5232 * * * * 5178 * * 5004 * * 1068 * * 3672 3582 1859 * * * 2 0 * * * * * * 6458 0 0 V 3 * 4227 * * * * * 4145 3700 2761 4555 * * * * 4333 1592 2048 * * 3 0 * * * * * * 6747 0 0 I 4 * * * * * * * 1398 * 1808 * * * * * * * 1578 * * 4 0 * * * * * * 7156 0 0 V 5 * 5884 * * 1505 * * 3721 * 4540 5683 * * * 5561 * 5732 2699 5694 1841 5 0 * * * * * * 7217 0 0 V 6 5488 * * * * * * 1583 * 3660 * * * * * * * 824 * * 6 0 * * * * * * 7264 0 0 D 7 4257 5772 2590 5790 4719 1870 * 4955 3824 5793 * 4393 * 5772 4725 3782 3429 4520 * * 7 0 * * * * * * 7264 0 0 N 8 * * * * * 1354 6179 * 4998 * * 927 * * 4726 * * * * * 8 0 * * * * * * 7264 0 0 V 9 4791 * * * 5666 * * 2051 5557 833 4776 * * * * * * 3575 * * 9 393 3615 2673 540 1679 * * 7264 2437 0 P 10 5589 * 5708 5508 * 5341 5346 * * * * 5656 279 * * 5377 5604 * * * 10 276 5553 2712 0 * 1923 442 7038 1000 3935 Q 11 4272 5046 4524 3012 5230 * * 3553 3043 * 5361 * 3586 5406 * 5321 3763 2246 * 3705 11 272 5286 2772 0 * 2363 312 6954 1000 4591 V 12 5402 4382 5142 * 4346 4140 * 3546 5492 4960 * 4663 5746 * * 3113 3749 1391 * 5334 12 69 * 4430 * * 2819 221 6798 0 5049 G 13 3869 * 2483 3464 4107 2476 * 3630 5023 * * * 2937 * * 4260 4172 5145 * 4435 13 40 5196 * 1000 1000 3398 144 6816 1000 4916 P 14 5024 * 2905 2719 * 4749 * * 3915 * * 3358 3341 3332 * 2906 3926 4266 * 4890 14 74 * 4327 * * * 0 6855 0 5017 D 15 2402 * 3008 2398 * 4137 * 4655 4031 3817 * 5059 4239 * 5018 4684 4390 4431 * 5547 15 38 * 5279 * * 2155 367 6860 0 5058 R 16 5528 * 4150 3374 * 3778 4372 5396 1667 * 5417 4634 * 4510 3616 3786 4005 4581 * * 16 67 * 4468 * * 1541 608 7548 0 4658 L 17 4810 6250 5563 3699 2376 5428 3264 5416 3295 3684 5461 5549 5244 4863 4155 * * 4323 4719 3625 17 81 5683 4827 2585 263 1286 761 7534 1000 4448 E 18 6382 * 2385 1674 * 3294 * * 4339 * * 4899 3812 2602 * 4741 5331 * * * 18 121 4567 4709 1337 727 2048 399 7686 1709 3858 K 19 2864 * 4161 2995 4425 * * 3485 4206 4236 * * * 4954 3923 5580 3685 2139 6122 * 19 0 * * * * 2716 238 7677 0 4015 L 20 * * 6150 * 3504 5660 * 5665 * 1413 * 5859 * 5618 * 3939 1954 4712 * 3580 20 0 * * * * 1273 771 7734 0 3735 K 21 4741 * 6035 956 4417 * * 4472 2345 3936 * * 5824 4466 * * * 6057 * * 21 0 * * * * 1183 838 7955 0 2950 N 22 5292 * 2328 2030 * 6272 * 6425 2527 * * 3189 6243 4982 4057 3906 4291 * * * 22 14 * 6703 * * * 0 7952 0 2055 V 23 4470 6014 2457 3335 3653 * * 4156 3517 3605 5253 5139 5882 4167 4390 3753 4508 4766 * 5422 23 71 6430 4786 1000 1000 0 * 7963 1000 2335 I 24 * * * * 5507 * * 2022 * 972 3831 * * * 6169 * * 2860 * * 24 12 6954 * 0 * 1243 792 8176 1000 1869 H 25 5639 7078 6361 4311 5532 6634 4550 4813 2603 3974 4795 * * 3942 1478 4816 5657 4856 6372 6669 25 9 * 7257 * * 0 * 8245 0 1640 K 26 3867 * 3377 1866 * 4512 6424 6466 2983 * 6358 4137 5102 3054 4260 4468 4274 * * * 26 9 7353 * 1000 1000 * 0 8259 1000 1000 I 27 5254 * * 3911 2858 * 4786 2878 5459 1647 4299 * * 6752 6825 6762 5153 3610 * 3900 27 15 6637 * 0 * * 0 8259 1000 1000 F 28 6317 4338 * * 432 * * 4432 * 3205 6378 * * * * * * 5059 * * 28 24 5921 * 0 * * 0 8257 1676 1000 S 29 3807 7111 4456 2383 * 3383 * 6783 3227 6410 5595 4952 5007 4177 6378 2038 4556 5439 * * 29 0 * * * * 0 * 8257 0 1000 K 30 3618 * 3959 3518 6880 * 5773 * 2360 7072 * 5046 3822 2529 3163 4132 4002 4941 * * 30 0 * * * * * * 8252 0 0 F 31 4092 3777 6183 * 2318 5762 4385 4322 6757 4217 5394 6678 6503 6582 7074 5870 4811 2775 5552 2379 31 41 5863 6554 1269 774 * * 8252 1697 0 G 32 3818 * 6632 6207 * 459 5459 6314 5018 6213 * 6651 6154 6619 6515 5486 6500 5668 * * 32 39 7427 5580 0 * 0 * 8230 1000 1000 K 33 4622 * 5266 2633 5541 4953 4655 5166 2478 * 5563 3620 2747 4620 4620 4955 4139 5147 * 5542 33 47 4955 * 733 1328 0 * 8225 2338 1523 I 34 4908 6908 * 6722 6158 6335 * 1591 6489 3244 6217 * 5858 6694 * 6670 5189 1336 * * 34 84 4521 6245 594 1566 * * 8252 3025 0 T 35 6575 * 4715 3265 6508 5401 5758 2975 2748 3392 6202 5259 * 5511 3774 4144 4244 2809 * 4786 35 57 5122 6655 779 1262 * 0 8230 2302 1000 N 36 4402 * 3162 3281 6833 6814 3951 4554 3367 5027 5820 3069 5292 4927 3427 3111 6762 4179 * 5855 36 99 4421 5668 1408 682 978 1022 8204 3106 1760 D 37 4462 4181 4484 4702 4015 * * 2345 5718 3535 4196 6516 * 5485 5229 6131 6605 1817 6593 5707 37 42 5852 6490 0 * 1518 620 8212 1725 2228 F 38 5702 * 4448 4258 4514 * 4857 3164 3153 4047 5622 6838 6209 5021 2686 3998 4149 3151 6608 4339 38 24 7328 6628 3170 170 0 * 8201 1000 2317 Y 39 * * 6638 * 3964 * 5844 1884 6309 1984 2649 6280 * * 5046 6821 6465 3131 * 4831 39 134 3675 6623 1572 591 0 * 8242 4167 1000 P 40 4075 * 2986 5770 6303 * 6476 3649 4040 3765 4230 4528 2237 6614 3658 5124 5189 3606 * 5521 40 98 4473 5591 248 2664 * 0 8240 3142 1000 E 41 6399 * 3332 4615 4731 6610 5237 5991 2448 4281 5857 4652 3942 5353 2667 3619 3769 5632 * 4498 41 41 5154 * 0 * 1494 632 8210 2098 2254 E 42 4999 * 2281 4229 6791 4879 5338 5057 3028 5127 5831 2915 4431 5646 3467 3681 5411 6463 6918 4933 42 279 2583 6762 1543 606 * 0 8223 5425 1726 D 43 4367 * 3312 3899 5698 4535 5190 5363 3210 * * 3896 4872 4615 4098 2793 2205 * * * 43 86 4118 * 2427 297 1488 636 8214 3586 2210 G 44 6008 * 5097 3831 4949 1285 7268 * 3536 4716 * 3389 6821 4412 4199 5361 4864 * 5315 5515 44 46 4987 * 1000 1000 1139 873 8233 2245 1588 K 45 5787 * 5284 3829 * 3436 4638 4765 2221 5538 6368 3312 * 4055 2707 4881 3999 4775 6487 6606 45 72 4818 6268 1609 573 * 0 8244 2724 1000 T 46 4774 6621 4572 * 5380 5057 3854 * 5514 4259 5830 2888 3760 6083 4672 1741 3401 5117 * 6527 46 53 6281 5416 861 1154 1043 958 8215 1555 1733 K 47 4942 * 6595 6290 5525 6515 6409 5529 1655 4473 5148 4905 5150 4772 2047 4183 3967 5794 * 6596 47 48 5638 6300 1601 577 582 1590 8189 1785 2237 G 48 5564 4354 6129 * * 683 4940 6820 6785 * 6405 5604 5140 5473 3678 5881 5213 5780 6790 6702 48 0 * * * * 0 * 8190 0 1676 Y 49 6677 4178 * * 1658 * 6842 4581 * 5486 5427 5803 * 4726 4671 3645 4604 3502 * 2199 49 31 6507 6635 2000 415 * * 8252 1000 0 I 50 1348 3109 * * 5754 1714 * 4637 * * * 6252 * * * 6253 * 3521 * 6132 50 47 4963 * 304 2395 * 0 8236 2019 1000 F 51 6795 5754 6293 6813 917 * 6170 3544 7011 4630 6617 * * 6622 * 5774 5043 6732 6467 2445 51 16 6524 * 0 * 0 * 8236 1000 1000 L 52 3811 4392 * * 5660 6273 * 2264 * 2915 5570 * * * * * * 1095 * 5760 52 13 6808 * 0 * * * 8252 1000 0 E 53 6845 5945 4848 1901 4857 5857 6574 5250 3889 4673 * 5637 * 3613 3627 4543 2820 3567 * 5282 53 0 * * * * * * 8252 0 0 Y 54 * 6775 * * 995 * * 6144 * 3675 4781 * * * * * 5760 5394 * 1653 54 0 * * * * * * 8252 0 0 A 55 2832 5061 3568 2410 5760 5123 5735 5883 3815 5667 5272 6836 4290 4621 4010 3241 4354 5754 * 5509 55 0 * * * * * * 8252 0 0 S 56 5389 6247 2361 3957 6273 5302 6852 * 4011 6953 * 2859 * 5216 4293 2469 2593 6555 * 6144 56 21 6144 * 1000 1000 * * 8252 1000 0 P 57 3873 * 5227 3002 6620 * 5311 3869 3397 6538 * 3507 2469 6623 3557 3666 5185 3485 * 6444 57 14 * 6670 * * * * 8252 0 0 A 58 4065 * 3220 1725 5480 3856 5927 6144 3881 6763 6349 5024 5897 4129 4099 3453 4943 5712 * 6244 58 19 6270 * 1000 1000 0 * 8244 1000 1000 H 59 2914 6417 2377 2773 5945 5239 7055 6023 * 6501 5686 5269 6845 3083 * 2438 4458 5376 * 6158 59 0 * * * * * * 8252 0 0 A 60 540 6740 * * * * * 6000 * 6608 5472 5945 6787 * 5181 4415 4646 3123 * * 60 0 * * * * * * 8252 0 0 V 61 3442 * 3144 2245 * 6444 5712 5180 3515 4967 5594 4631 5841 3139 4824 4340 4010 4139 * 6538 61 0 * * * * * * 8252 0 0 D 62 3529 6880 3916 3745 5637 6247 * 4897 2406 4785 5531 3355 6526 3397 2848 5185 4266 6902 * 5618 62 0 * * * * * * 8252 0 0 A 63 396 3917 * * * * * 4602 * * * * * * * 6417 5059 3462 * * 63 0 * * * * * * 8252 0 0 V 64 4303 5500 * * 5201 * * 1772 4506 2121 4422 * * 5086 5035 7028 * 2449 * 4797 64 49 * 4908 * * * * 8252 0 0 K 65 3700 * 4340 2859 6730 * 3615 5736 2431 4676 5528 3102 6475 3423 3580 5363 4908 * * 5822 65 9 * 7373 * * 0 * 8243 0 2684 N 66 2891 * 4350 2971 6560 4479 4877 5123 2805 5615 5491 4782 6243 3514 4209 3968 3308 5615 * 6908 66 10 7166 * 2000 415 0 * 8264 1000 1000 A 67 4728 6432 * 5818 3126 * * 4457 5556 1142 2450 * * * * * 6574 4530 * 4017 67 33 5484 * 1000 1000 * * 8252 1679 0 D 68 5462 * 2578 5155 * * 2886 * 6809 5821 * 1296 * 3398 5492 3771 * 6916 * 6158 68 0 * * * * * * 8252 0 0 G 69 5676 5532 4739 6926 6172 886 5725 * 4508 * 6881 2538 * 4887 4239 5168 * * * * 69 28 6739 6621 0 * * * 8236 1000 0 Y 70 5352 * 6112 6532 2641 6191 3934 5555 2438 5007 4879 * * 4532 3653 5407 2986 4165 6592 3303 70 16 6460 * 0 * * 0 8263 1000 1000 K 71 4418 * 6334 3249 4974 * 4574 5435 2772 4305 4852 4215 3533 4261 3153 3765 5001 5276 6277 4091 71 18 6311 * 1585 585 * 0 8090 1000 1000 L 72 * * * * 2211 * * 2188 * 1196 5118 * * * * * 6279 3532 * * 72 131 * 3525 * * * 0 8006 0 1000 D 73 5960 5771 1268 2899 3856 2788 5572 5678 * 5062 * 4864 * * 5259 5668 5041 * * 5544 73 51 * 4843 * * 224 2796 7595 0 3392 K 74 4715 * 5063 4841 * 1428 * * 2576 * * 3544 * 3608 4313 3345 4595 * * * 74 109 * 3778 * * 0 * 7467 0 2362 Q 75 * * 4716 * * 3638 * * 2052 * * 1742 * 3894 2445 3838 5604 * * * 75 101 5126 4685 0 * 0 * 7385 1000 2467 H 76 * 4757 * 3877 5362 * 1361 * 3920 * * 3726 4408 5316 2467 4175 5005 * * * 76 25 * 5874 * * 0 * 7266 0 1559 T 77 5326 * * 5265 * 5356 * 2294 2684 * * * 4357 5202 4670 * 1652 2925 * * 77 41 * 5175 * * 0 * 7060 0 1000 F 78 * * * * 2261 * * 3338 * 849 3539 * * * * * * 4281 * * 78 0 * * * * 0 * 6871 0 1000 R 79 4694 * * * * * 4317 4729 2574 4601 * 3939 * 3030 2130 3336 4901 3534 * 5081 79 0 * * * * * * 6413 0 0 V 80 * * * * * * * 2634 * * * * * * * * * 253 * * 80 0 * * * * * * 5922 0 0 N 81 * * 2257 * * * 2669 * * * * 1041 * * * 2759 * * * * 81 0 * * 0 * * * 4635 0 0 //