HHsearch 1.5 NAME c2kr1A_ FAM FILE c2kr1A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2kr1A_.a3m DATE Sat Aug 28 15:42:26 2010 LENG 64 match states, 64 columns in multiple alignment FILT 38 out of 42 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.8 EVD 0.4404 0.7984 SEQ >ss_dssp CCCHHHHHHHHHHHHHHHTCCSCSSCCCTTSTTSTTCCCCCHHHHHHHHHHHHHHTCCCCCCCC >sa_dssp EEEDECDDDCEEBCDABCEACEEEEBEBECABDBEECEECEEEDACECAEDACDEECECCEEEE >ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC >ss_conf 9436999999999999961747899968884657888898877999999999742423004797 >Consensus mkRxxxkxLVxxYxxQLtxGCxxxxCxnxxCxSsxxfxxxxpxxAAxxAixLxxxxaxLCxxxP >c2kr1A_ MKRAAAKHLIERYYHQLTEGCGNEACTNEFCASCPTFLRMDNNAAAIKALELYKINAKLCDPHP >UniRef50_A2FPQ0(2-64:705) Ubiquitin ligase, putative n=1 Tax=Trichomonas vaginalis RepID=A2FPQ0_TRIVA E=1e-13 s/c=1.23 id=37% cov=94% -----AKTIVHALFHQLTNGCNKYNCDNKECRSCKDFmySFANPNEAAKTAITLAKDYTNhICKGLP >UniRef50_B2ARU1(66-127:1315) Predicted CDS Pa_4_6390 n=1 Tax=Podospora anserina RepID=B2ARU1_PODAN E=4e-08 s/c=0.95 id=36% cov=56% -RRHNFQQIVQRYIVQLREGCGAEHCVTPTCFTCRK---------------------------- >UniRef50_A2DQ30(7-64:682) Ubiquitin ligase, putative n=1 Tax=Trichomonas vaginalis RepID=A2DQ30_TRIVA E=1e-05 s/c=0.88 id=40% cov=78% ----------QLYLAQLTSGCDSLTCTSRHCRSSPNFEHRDK-QLQIIALELAEDDSEhLC---- >UniRef50_B3RYC9(101-159:821) Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RYC9_TRIAD E=1e-11 s/c=1.20 id=39% cov=84% --------LVSCYYGQLTIGCEKSNCRNKFCRSNEDFKLLSSDMAAIVSIELASrQRLFLCS--- >UniRef50_A2DBI7(9-59:665) Ubiquitin ligase, putative n=1 Tax=Trichomonas vaginalis RepID=A2DBI7_TRIVA E=9e-11 s/c=1.33 id=32% cov=78% ------------YYYQITHGCESVNCKNPYCMSCSSFhHPENPTLLAVNLAENHFSKDNLCS--- >UniRef50_D0NUM6(5-50:172) Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NUM6_PHYIN E=6e-08 s/c=1.28 id=34% cov=69% -------QLVQAYFAMLTVGCQRDICPNSNCCSNPHTRALTATEAAIKSI-------------- >UniRef50_C4M9I9(12-57:661) Ubiquitin-protein ligase, putative n=2 Tax=Entamoeba RepID=C4M9I9_ENTHI E=0.0001 s/c=1.04 id=30% cov=73% ------------YINRICFGCGNDQCNNKYCKSSSSF--VSPLNIEEEAQQLEINKTPLC---- >UniRef50_B6Q553(55-126:1309) HECT domain protein n=2 Tax=Trichocomaceae RepID=B6Q553_PENMQ E=4e-17 s/c=1.23 id=30% cov=100% -RRRNFNSLVRRYKHQILYGCENPNCRMPTCLnyqkrvSEGPFRPYTELSARTLACYLASQDNPekaLCRNPP >UniRef50_UPI0001926492(15-75:777) PREDICTED: similar to predicted protein n=2 Tax=Hydra magnipapillata RepID=UPI0001926492 E=6e-14 s/c=1.29 id=35% cov=97% IRRISPELLIKKYFQQLTSGCGRKNCSNKKCVS-GGFVAMNCEDAAVMALKCIIEKAQICED-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 2704 * * 240 * * * * * * * * * 1 0 * * * * * * 2332 0 0 K 2 * * * * * * * * 656 * * * * * 1452 * * * * * 2 0 * * * * * * 3064 0 0 R 3 * * * * * * * * 4160 * * * * * 83 * * * * * 3 0 * * * * * * 3064 0 0 A 4 1548 * 4036 * * 3899 2641 3506 * 4160 * * * * 3093 3205 * * * * 4 0 * * * * * * 3064 0 0 A 5 1270 * * * * * * * * 4151 * 2225 * 4584 * 2261 4885 5017 * * 5 0 * * * * * * 3392 0 0 A 6 1479 * * * 2140 * * * * * 4378 * 3955 * * * 3718 2147 * * 6 0 * * * * * * 3575 0 0 K 7 * * * 3268 * * * * 869 * * 3652 * 2522 3398 * * * * * 7 0 * * * * * * 3718 0 0 H 8 * * * 3491 * * 2512 4833 3264 2141 * 4371 * 2758 * 3310 3778 * * * 8 0 * * * * * * 3829 0 0 L 9 3373 * * * * * * 3787 * 375 * * * 4057 * * * * * * 9 0 * * * * * * 3909 0 0 I 10 * * * * * * * 1012 * * * * * * * * * 988 * * 10 0 * * * * * * 3968 0 0 E 11 * * * 1896 * 5015 4514 * 3111 * * * * 1681 2812 4661 4414 * * * 11 0 * * * * * * 4029 0 0 R 12 3045 4661 * * * 4796 5518 * 2880 2829 * * * 3231 1327 * * * * * 12 0 * * * * * * 4029 0 0 Y 13 * * * * 4120 * * * * 3499 * * * * * * * * * 228 13 0 * * * * * * 3868 0 0 Y 14 * * * * 1196 * 5161 3248 2995 3620 * * * * * * * 4964 * 2385 14 0 * * * * * * 3868 0 0 H 15 2977 * * 4794 4206 4628 2607 * 4210 5449 * 2438 * 5053 * 4313 5348 4949 * 2479 15 0 * * * * * * 3868 0 0 Q 16 * * * * * * * * * 4803 4509 * * 190 4516 * * * * * 16 0 * * * * * * 3754 0 0 L 17 * * * * 4354 * * 2405 * 392 * * * * * * * * * * 17 0 * * * * * * 3754 0 0 T 18 * 4516 * * * * * 4517 5444 2328 * * * 4325 3341 * 937 5678 * * 18 0 * * * * * * 3754 0 0 E 19 * * 3424 2068 4516 * 2803 4935 * * * 3567 * * * 3179 * 3359 * 2678 19 0 * * * * * * 3754 0 0 G 20 * * * * * 0 * * * * * * * * * * * * * * 20 0 * * * * * * 3754 0 0 C 21 * 0 * * * * * * * * * * * * * * * * * * 21 0 * * * * * * 3754 0 0 G 22 * * 2784 3441 * 1089 * * 4402 * * 4817 * 3192 4517 5099 5186 * * * 22 0 * * * * * * 3754 0 0 N 23 4889 * 3201 4455 * * * * 3407 * * 1395 * * 2741 2413 * * * * 23 0 * * * * * * 3754 0 0 E 24 2951 * 3512 2667 * 4803 * 3623 5072 4180 * * 2320 3904 * 4250 * 3867 * 4817 24 0 * * * * * * 3754 0 0 A 25 3696 * 3510 4803 5476 5486 3200 4509 * 5099 * 1472 * 3675 * 4154 5021 * * 4417 25 0 * * * * * * 3754 0 0 C 26 * 0 * * * * * * * * * * * * * * * * * * 26 0 * * * * * * 3754 0 0 T 27 * * 3684 4953 * * * * 3176 * 5592 4516 3985 3922 3375 2758 2067 3282 * * 27 0 * * * * * * 3754 0 0 N 28 * 4354 * * * * * * * * 4858 702 * 4953 * 5021 2065 * * * 28 0 * * * * * * 3754 0 0 E 29 3950 * 4803 3235 * * * 5758 2072 * * 5444 1750 4212 3747 3903 5541 * * * 29 0 * * * * * * 3754 0 0 F 30 * * * 3883 3350 * 3434 * 5072 * * 2156 * * * 5654 1871 * 3800 3029 30 0 * * * * * * 3754 0 0 C 31 * 0 * * * * * * * * * * * * * * * * * * 31 0 * * * * * * 3754 0 0 A 32 1298 4509 * * 3045 * * * 3038 2944 5329 * * * 3036 * * 5072 * * 32 51 4858 * 2585 263 * * 3754 1000 0 S 33 * * * * * * * * * * * * * * * 150 3341 * * * 33 87 5156 5042 2585 263 * * 3754 1000 0 C 34 * 1943 * 5017 * * * * * * * 2995 * * * 961 * * * 3842 34 0 * * * * 0 * 4252 0 1000 P 35 4588 * 4598 4847 * 2083 * * 2850 5554 * * 3488 * 2591 2573 3986 * * * 35 0 * * * * * * 4351 0 0 T 36 * * 3464 * * 4045 4773 * 2940 * * 2431 3852 5978 2497 2513 4083 * * * 36 179 3102 * 2761 230 * * 4351 1506 0 F 37 * 4596 * * 786 * * 4986 * 2931 * 5067 * * * * 4920 3128 * 4688 37 253 3125 4427 688 1399 * * 4193 1984 0 L 38 3291 * * 4754 * 5407 3674 * 2838 3975 * 5353 3717 * 1956 2865 5839 4558 * * 38 0 * * * * * 0 4034 0 1000 R 39 3667 * 5095 * 3504 * 2949 * 4007 4670 * 2795 1965 * 2827 * * * * 4977 39 172 3618 5004 1000 1000 0 * 4034 1451 1000 M 40 4578 * * 4437 4127 * * 4364 3833 1724 2471 * 4656 * 3863 * * 4349 * 3388 40 61 4603 * 1000 1000 0 * 4182 1000 1000 D 41 * * 2635 * * * * * 4596 4592 * 2175 * * * 2347 1564 * * * 41 0 * * * * * * 4193 0 0 N 42 4920 3823 5060 4185 * * 4688 * 4179 * * 3938 1114 * 5140 3358 3958 * * * 42 54 * 4776 * * * * 4193 0 0 N 43 4551 * 2924 4602 * * * * * 2498 * 1228 * * * * 2471 * * * 43 0 * * * * 0 * 4074 0 1000 A 44 3938 * 2718 1864 * * * * * 4467 3655 4427 * 3052 * 2744 4688 5140 * * 44 0 * * * * * * 4193 0 0 A 45 491 * * * * * * 3517 * 3184 * * * * * 4592 * 4339 * * 45 61 4592 * 1000 1000 * * 4193 1000 0 A 46 541 * * 4427 * * * * * * * * * 4776 2744 4592 4688 * * * 46 0 * * * * * * 4193 0 0 I 47 1922 * * 4427 * * * 2974 3599 4596 * * * * * 3650 2744 2255 * * 47 0 * * * * * * 4193 0 0 K 48 * * * 4427 * * * 3233 2556 2256 3854 4467 * 3270 3281 * 4606 3957 4592 * 48 0 * * * * * * 4193 0 0 A 49 371 * * * * * * * * 4467 * * * * * 2828 * 4613 * * 49 0 * * * * * * 4193 0 0 L 50 4467 3557 * * 5656 * 4688 1375 * 1867 * * * 4427 * 4592 * 3973 * * 50 0 * * * * * * 4193 0 0 E 51 * 4887 3815 1583 * * * 4959 4548 5011 * * * 1980 * * 4577 * * 2642 51 0 * * * * * * 4145 0 0 L 52 * 3739 * * * * * * * 186 * 4443 * * * * * * * * 52 0 * * * * * * 4145 0 0 Y 53 1373 * * 4341 2558 * 4443 4548 * 3468 * * * * * 4535 3647 5358 * 3874 53 0 * * * * * * 4145 0 0 K 54 * * * 4722 4443 4535 * 3441 1872 4985 * * * * 3993 1553 * 3783 * * 54 61 4602 * 0 * * * 4145 1000 0 I 55 5329 * 3046 4534 * * * 4496 * 4987 * 2318 * 1342 * 3863 * 5219 * 4488 55 64 4518 * 2585 263 * * 4103 1000 0 N 56 * * 1394 4075 * * * * 1543 * * 3762 * * 3419 * * * * 4323 56 0 * * * * * * 4061 0 0 A 57 1076 * 2966 * * * * * * 4587 * 2497 * * * 4551 3267 4945 * * 57 0 * * * * * * 4061 0 0 K 58 4556 * 5283 3308 4587 * * 5624 3401 * * 2976 1821 2639 3270 * * * * * 58 614 1528 * 1128 882 * * 4061 2865 0 L 59 * * * * * * * 3048 * 257 * * * * * * * 4556 * * 59 0 * * * * * * 4061 0 0 C 60 * 0 * * * * * * * * * * * * * * * * * * 60 42 5128 * 2585 263 * * 4061 1000 0 D 61 * * 2754 1996 * 4216 * * 3775 4173 * 3598 * 5016 2800 2628 * * * * 61 55 4740 * 0 * * * 3531 1000 0 P 62 3655 * 2820 * * 3461 * * * * * 2345 1359 4061 4590 * * * * * 62 0 * * * * * * 3296 0 0 H 63 3796 * * * * * 1572 * 4162 2527 * * 2581 * * * 2357 * * * 63 0 * * * * * * 3236 0 0 P 64 * * * * * * * * * * * * 0 * * * * * * * 64 0 * * 0 * * * 2970 0 0 //