HHsearch 1.5 NAME c2kncB_ FAM FILE c2kncB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2kncB_.a3m DATE Sun Aug 29 02:04:51 2010 LENG 79 match states, 79 columns in multiple alignment FILT 43 out of 47 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.6 EVD 0.4128 -0.2884 SEQ >ss_dssp CCSSCSSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHCSCCSCCCSCCCC >sa_dssp EEEDDEEEDDEEEDEEEDCCEEEEDEDDEEEEDEDEDDDDEDEEDDDEEEEEEDEEDEEEDEEEEEDEDEEEEEEEEEE >ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCC >ss_conf 9876678768999999999999999999999999997886999999999998428884678740388000456843789 >Consensus xxxxxxxpNilxIvlgvixgIvliGllxLliwKllxtixDrrEyxkFekExxxakwxxxeNPlYkxatttfxNPxyxgx >c2kncB_ GAMGSKGPDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAKWDTANNPLYKEATSTFTNITYRGT >UniRef50_C3Y4C3(364-410:1204) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3Y4C3_BRAFL E=2e-07 s/c=1.21 id=34% cov=48% ---------------------------------------DKQEFLLWQDEMKQqaVGWDTAESPIYTGAVTTHQNPEF--- >UniRef50_P05107(698-767:769) Integrin beta-2 n=64 Tax=Coelomata RepID=ITB2_HUMAN E=4e-22 s/c=1.50 id=38% cov=90% ------GPNIAAIVGGTVAGIVLIGILLLVIWKALIHLSDLREYRRFEKEKLKSQWN-NDNPLFKSATTTVMNPKFA-- >UniRef50_Q75S85(778-850:852) Integrin beta n=2 Tax=Ascidiacea RepID=Q75S85_HALRO E=4e-21 s/c=1.40 id=35% cov=90% --------NPLLYVLPIVAGIVLIGLIALAVWKVYQTMRDKKEWENFEREMKQSRWTKDINPVFVNPSAKFENPSYGG- >UniRef50_Q8T5U7(727-796:803) Integrin beta n=6 Tax=Culicidae RepID=Q8T5U7_ANOGA E=1e-15 s/c=1.20 id=31% cov=86% --------NLIAAGFTIAASIIIGGLLMLFCYRCKIMYDDRKMFAKFEKEREQETKYQMESPLYKSPISNFKVPA---- >UniRef50_UPI0000D56C79(647-714:724) PREDICTED: similar to beta nu integrin subunit AgBnu n=1 Tax=Tribolium castaneum RepID=UPI0000D56C79 E=1e-13 s/c=1.14 id=35% cov=80% -----------VYVGLIIGALLVAGLLFILGWKARNMIQDKREYNEFVKNRQMNQ--TNENPLYKSPLVTYKNPM---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 A 2 0 * * * * * * * * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 M 3 * * * * * * * * * * 0 * * * * * * * * * 3 0 * * * * * * 1000 0 0 G 4 * * * * * 0 * * * * * * * * * * * * * * 4 0 * * * * * * 1000 0 0 S 5 * * * * * * * * * * * * * * * 1288 760 * * * 5 0 * * * * * * 2164 0 0 K 6 * * * 983 * * * * 1017 * * * * * * * * * * * 6 0 * * * * * * 2586 0 0 G 7 3033 * * * * 1880 * * 1846 * * * 2169 * * * 3241 * * * 7 0 * * * * * * 2644 0 0 P 8 * * * * * * * 3623 * * * * 256 * * * * 3620 * * 8 119 * 3664 * * * * 2824 0 0 D 9 * * 3241 * * * * * * * * 323 3396 * * * * * * * 9 0 * * * * 0 * 3584 0 1000 I 10 4964 * * * * * * 1368 4728 2781 5712 * 2679 * * * 4578 2472 * * 10 0 * * * * * * 3676 0 0 L 11 2717 * * * * * * 3368 * 1116 4964 4578 4791 * * * * 5689 3163 4363 11 0 * * * * * * 3676 0 0 V 12 1593 * * * * 3751 * 2590 * 3446 4654 * 3495 4390 * * 4968 3366 * 4993 12 0 * * * * * * 3861 0 0 V 13 2992 * * * * * * 609 * * * * * * * * * 2909 * 3549 13 0 * * * * * * 3861 0 0 L 14 3139 * * * * 4125 * 2959 * 3534 4654 * * * * * * 800 * * 14 0 * * * * * * 3861 0 0 L 15 3559 * * * 3324 2042 * 4804 * 1045 5810 * * * * * * 4875 * * 15 0 * * * * * * 3861 0 0 S 16 4263 * * * * 900 * * * 4306 * * 2751 * * 2683 4125 * * * 16 0 * * * * * * 3861 0 0 V 17 4937 3783 * * * * * 2454 * 3707 * * * * * 3943 2603 1301 * * 17 0 * * * * * * 3861 0 0 M 18 4125 * * * * * * 1033 * * 4239 * * * * 4654 * 1468 * * 18 0 * * * * * * 3861 0 0 G 19 1268 * * * * 1220 * 4875 * 4654 * * * * * 4440 * 4804 * * 19 0 * * * * * * 3861 0 0 A 20 1785 * * * * 1008 * * * 3857 * * * * * 3020 5635 * * * 20 0 * * * * * * 3861 0 0 I 21 * * * * * * * 639 * 4306 * * * * * * 3869 2067 * * 21 0 * * * * * * 3861 0 0 L 22 4082 * * * * * * 3019 * 1593 * * * * * * * 1041 * * 22 0 * * * * * * 3861 0 0 L 23 4077 * * * 4351 3839 * 2482 * 756 * * * * * * * 4306 * * 23 0 * * * * * * 3861 0 0 I 24 3604 * * * 5722 3495 * 902 * 3489 * * * * * 4390 4276 3529 * * 24 0 * * * * * * 3861 0 0 G 25 * * * * * 76 * * * * * * * * * 4276 * * * * 25 0 * * * * * * 3861 0 0 L 26 * * * * 4922 * * 2395 * 689 4290 * * * * 4404 * 4098 * * 26 0 * * * * * * 3862 0 0 A 27 2384 * * * * 4776 * 2357 * 1175 * * 5644 * * * * 3912 * 4404 27 0 * * * * * * 3862 0 0 A 28 2931 3622 * * 4313 * * 2315 * 1792 4131 * * * * 5644 2894 4793 * * 28 0 * * * * * * 3862 0 0 L 29 * * * * * * * 4313 * 183 * * * * * * * 3866 * * 29 0 * * * * * * 3862 0 0 L 30 3934 3546 * * 4131 * * 1753 * 1199 4793 * * * * * * 5414 * * 30 0 * * * * * * 3862 0 0 I 31 3800 4131 * * * 3386 * 1326 * 2868 * * * * * * 4181 2439 * * 31 0 * * * * * * 3862 0 0 W 32 4301 * * * * * * 4014 * * * * * * * * * 4393 525 2788 32 0 * * * * * * 3863 0 0 K 33 * * * * * * * * 402 * * * * * 2355 4393 * * * * 33 0 * * * * * * 3863 0 0 L 34 3812 4171 * * * 5091 * 1932 * 1432 * * * * * 5216 * 2871 * 4393 34 0 * * * * * * 3863 0 0 L 35 * * * * 3103 * * 5204 4171 890 5007 * * * 4347 4831 * 4010 * 3574 35 0 * * * * * * 3863 0 0 I 36 6043 * * 4218 4994 * * 2250 4434 3763 4170 4539 * 3333 * * 2161 2755 * * 36 0 * * * * * * 3997 0 0 T 37 * * 2930 3510 * * 5460 5963 * * 2858 * * * * 4458 1239 5289 5140 3621 37 0 * * * * * * 4002 0 0 I 38 * * * * 4297 * * 1396 * 1785 3010 4437 * * * * * 4894 5117 4434 38 0 * * * * * * 4007 0 0 H 39 * * 3741 * 5878 * 1812 * 3065 * * 5186 * 3441 3582 4776 * 5090 * 2089 39 49 4895 * 2000 415 * * 4072 1000 0 D 40 * * 43 5081 * * * * * * * * * * * * * * * * 40 0 * * * * * * 3871 0 0 R 41 5785 * * * * * * * 1408 5809 * 5657 * 4493 1175 5405 * * * 4144 41 0 * * * * * * 3871 0 0 K 42 * * * * * * * 5343 1890 * * 4603 * 4871 869 5590 5152 4882 * * 42 0 * * * * * * 3871 0 0 E 43 * * 5472 173 * * * * 4583 * 4367 * * * * * * * * * 43 0 * * * * * * 3818 0 0 F 44 * * * * 1790 * * * * 3827 * * * * * * * 3750 3901 1003 44 0 * * * * * * 3818 0 0 A 45 1538 * * 2483 * * * * 3195 4770 * 3733 * 2972 3344 5066 * * * * 45 0 * * * * * * 3892 0 0 K 46 4328 * * 3114 * * * * 1077 4770 * 3397 * 4239 3273 4280 5553 * * * 46 0 * * * * * * 3892 0 0 F 47 * * * * 185 * * * * * * * * * * * * 4502 3711 * 47 0 * * * * * * 3892 0 0 E 48 * * * 600 * * * * 4147 4912 5117 5553 * 2775 * * * 4203 * * 48 0 * * * * * * 3892 0 0 E 49 3973 * 4053 3023 * * * * 1359 5117 * 3825 * 5021 2683 4147 5574 * * * 49 0 * * * * * * 3892 0 0 E 50 4502 * 3939 364 * * * * * * 5166 5240 * 4070 * * * * * * 50 0 * * * * * * 3892 0 0 R 51 3659 5664 * 5285 * 5021 * 5399 3270 5082 3909 * * 3089 1378 3668 * 4632 * * 51 0 * * * * * * 3892 0 0 A 52 2959 * 5285 3672 * * 4521 5727 1754 4006 4026 5166 * 2877 5179 3958 5117 * * * 52 0 * * * * * * 3892 0 0 R 53 3884 * * * * 5402 5523 * 2107 3537 4388 2020 * 2540 3745 5179 * * * * 53 54 4770 * 1000 1000 * * 3892 1000 0 A 54 1212 * * 3710 * * * * 4912 5066 5021 5240 4300 * 4231 3193 3443 3918 * * 54 27 5727 * 0 * * * 3892 1000 0 K 55 * * * * * 2921 5402 * 1270 * * 5066 * 2918 2741 5595 3362 * * * 55 39 * 5240 * * * * 3892 0 0 W 56 * * * * 2876 5566 * * 4375 * * * * * * * * * 539 3234 56 44 * 5048 * * * 0 3876 0 1000 D 57 * * 1911 3612 * 4428 * * 3576 * * 3011 * 3797 * 3308 2505 * * 4360 57 63 * 4548 * * 946 1057 3771 0 1511 T 58 * * 5377 3510 * 4768 * * 2320 * 3966 * * 2734 3929 4020 2251 3330 * * 58 0 * * * * 569 1618 3859 0 1729 A 59 2460 * 3555 4282 * 2140 * * * * 4340 2589 * * 5695 2481 * 4611 * * 59 66 * 4489 * * * 0 3867 0 1000 N 60 * * 3307 1126 * * * 4186 4254 4123 * 3389 * 5070 * 4028 3919 5407 * * 60 0 * * * * 0 * 3801 0 1633 N 61 * * * * * * * 4627 * * 5691 274 * * * 3144 * * * * 61 0 * * * * * * 3892 0 0 P 62 4377 * 4627 * * * * * * * * * 134 * * * * * * * 62 0 * * * * * * 3892 0 0 L 63 * * * * * * * 1475 * 887 * * * * * * * 4170 * 4502 63 0 * * * * * * 3892 0 0 Y 64 * * * * 2580 * 4632 * * * * * * * * * * * * 336 64 61 * 4585 * * * * 3892 0 0 K 65 * * * 3662 * * 5032 * 984 * * * * 2920 3047 4825 4686 4117 * * 65 0 * * * * 0 * 3720 0 1000 E 66 4250 * 3806 3196 * 3471 * * 3388 * * 3297 3989 3536 * 1696 5534 * * * 66 0 * * * * * * 3788 0 0 A 67 868 * * * * * * * * * * * 1450 * * 3536 * * * * 67 0 * * * * * * 3788 0 0 T 68 * * * 5147 4414 * * 3184 3541 5202 * * * * * 2859 1026 3783 * * 68 0 * * * * * * 3788 0 0 S 69 5017 * * * * * * 4243 4457 * * * * 4595 * 1755 1084 4028 * * 69 0 * * * * * * 3788 0 0 T 70 * * 5383 3750 * * * * 3643 * * 2880 * * 4166 * 758 4690 * * 70 0 * * * * * * 3788 0 0 F 71 * * * * 886 * 3067 * * * * * * * * * 4988 2231 * 3393 71 0 * * * * * * 3788 0 0 T 72 * * 5188 3671 * * * 4926 1688 4845 3938 5417 4463 3127 * 4142 3604 2957 * * 72 44 5042 * 3000 193 * * 3711 1000 0 N 73 * * * * * * * * * * * 76 * * * * * 4275 * * 73 0 * * * * * * 3711 0 0 I 74 * * * * * * * 5669 5042 * * * 114 * * * * 5254 * * 74 0 * * * * * * 3711 0 0 T 75 2570 * * 4587 * * * 4911 4871 5333 3242 * * * 3048 3189 1833 3629 * * 75 0 * * * * * * 3672 0 0 Y 76 * * * * 1361 * * * * * * * * * * * * * * 711 76 0 * * * * * * 3650 0 0 R 77 2291 * 5287 3199 * 2009 * 4294 4915 * * 2694 * * 2762 5229 * * * * 77 0 * * * * * * 3555 0 0 G 78 * * * * * 269 * * * * * * 2553 * * * * * * * 78 0 * * * * * * 3016 0 0 T 79 * * * * * * * * * * * * * * * * 0 * * * 79 0 * * 0 * * * 1738 0 0 //