HHsearch 1.5 NAME c2kncA_ FAM FILE c2kncA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2kncA_.a3m DATE Sat Aug 28 15:40:47 2010 LENG 54 match states, 54 columns in multiple alignment FILT 51 out of 55 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.9 EVD 0.4373 1.1417 SEQ >ss_dssp CCTTCTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSCCCCSSSCC >sa_dssp EEEEEEEEEEEEEEEEEDEEDCEEEEEEEDEDDECEDDEEEEEEEEDDEEEEEE >ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCC >ss_conf 974433356625999999999999999999999953342045888771353159 >Consensus xxxxxexxxVpxWiiixsxxxGlllLxxixxxLxKxGFFKRxrpxxxeexxxxe >c2kncA_ GAMGSEERAIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRPPLEEDDEEGE >UniRef50_Q9GSF4(967-1004:1021) Integrin alpha chain n=1 Tax=Podocoryna carnea RepID=Q9GSF4_PODCA E=3e-08 s/c=1.57 id=31% cov=72% -----ESSTVEWWIIFICILVAILIIAVIVFIMYKKGFFKRKK----------- >UniRef50_B0W840(928-974:994) Integrin alpha-PS5 n=1 Tax=Culex quinquefasciatus RepID=B0W840_CULQU E=5e-05 s/c=1.04 id=36% cov=61% ---------VPMWVYVLSVLLGALILAVITHLLHKRQFFKR------------- >UniRef50_Q9BPQ7(777-824:833) Integrin alpha Hr2 (Fragment) n=1 Tax=Halocynthia roretzi RepID=Q9BPQ7_HALRO E=2e-12 s/c=1.54 id=35% cov=91% ------KKEVQWWIIALAVAAGVTVLVLLIITLWKCGFFKRKRKPEGEDSAQRE >UniRef50_UPI0001760575(1126-1169:1170) PREDICTED: similar to Integrin alpha-10 n=5 Tax=Clupeocephala RepID=UPI0001760575 E=3e-07 s/c=1.28 id=39% cov=81% ---------ISLWILIGSIIGGLLLLALLVFILWKLGFFTRKQRKDEDENDD-- >UniRef50_C4QKY1(1293-1327:1493) Integrin alpha-ps, putative n=1 Tax=Schistosoma mansoni RepID=C4QKY1_SCHMA E=6e-07 s/c=1.58 id=39% cov=67% --------KVPLWPVIAGIVVGLWILMILSALLYCCGFFTRRR----------- >UniRef50_UPI0000E483DC(73-125:146) PREDICTED: similar to integrin alpha V subunit, partial n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E483DC E=1e-09 s/c=1.21 id=41% cov=69% -----ENQPVPKWVVAVSIAAGIVCLIVVILVMWKCGFFRR------------- >UniRef50_UPI0001A2C300(1059-1098:1101) UPI0001A2C300 related cluster n=3 Tax=Danio rerio RepID=UPI0001A2C300 E=0.0002 s/c=1.16 id=37% cov=76% --------------IIGGVIGGLVLLALITAALYKAGFFKSQYKQMMEEAQGEE >UniRef50_B3RTB9(933-984:1005) Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RTB9_TRIAD E=4e-09 s/c=1.20 id=38% cov=83% ----------PVWIIVVSAMAGFFLLSGCVYILWKCGFFKRKKieisgPIGAEENENQD >UniRef50_Q69HR1(476-530:555) Integrin alpha Hr1-like (Fragment) n=4 Tax=Ciona intestinalis RepID=Q69HR1_CIOIN E=1e-07 s/c=1.05 id=36% cov=93% -----DQSKLDIGPLIGAIVGGIVLLVVIMLIMWKVGFFKskyakmRREAENTDDNHESE # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 1000 * * * * 1000 * * * * * * * * * * * * * * 1 0 * * * * * * 1521 0 0 A 2 1000 * * * * * * * * * * * * * * 1000 * * * * 2 0 * * * * * * 1521 0 0 M 3 * * * * * * * * * * 1000 * * * * * 1000 * * * 3 0 * * * * * * 1521 0 0 G 4 1532 * * * * 612 * * * * * * * * * * * * * * 4 0 * * * * * * 1854 0 0 S 5 1417 * * * * * * * * * * * * 3014 * 1469 2830 * * * 5 0 * * * * * * 2258 0 0 E 6 * * 2465 828 * * * * 3987 * * * * 2378 * * * * * * 6 0 * * * * * * 2809 0 0 E 7 * * 4657 2348 * * 4997 * 2157 * * 4031 4499 2730 * 1987 * * * * 7 0 * * * * * * 2913 0 0 R 8 4265 * * 2972 * * * * 2534 * * * * 3285 2511 2478 2394 * * * 8 0 * * * * * * 2913 0 0 A 9 4959 * 4428 1596 * 3183 * * 2673 * * 4748 2432 * * * 3305 * * * 9 0 * * * * * * 2933 0 0 I 10 * * * * * * * 2000 * 3394 * * * * * * 4938 684 * * 10 0 * * * * * * 3009 0 0 P 11 4569 * 5064 3756 * * * * 4582 * * 5898 511 5489 5202 4503 * * * * 11 0 * * * * * * 3081 0 0 I 12 * * * * * * * 1766 5127 1909 4033 * 5680 * * 4961 4933 4240 2233 * 12 0 * * * * * * 3081 0 0 W 13 * * * * 4350 4369 * * * * * * 5474 * * * * * 237 4980 13 0 * * * * * * 3087 0 0 W 14 * * * * * * * 836 5115 4774 * * 3911 * * * * 2410 3530 4920 14 0 * * * * * * 3087 0 0 V 15 * * * * * * * 777 * 3859 * * * * * * * 2365 * 2706 15 0 * * * * * * 3087 0 0 L 16 3984 * * * 4452 * * 1386 * 3089 * * 5318 * * * * 1451 * * 16 0 * * * * * * 3096 0 0 V 17 4017 * * * * 2599 * 3050 * 1933 * * * * * 5282 5022 1582 * * 17 0 * * * * * * 3096 0 0 G 18 1848 4452 * * * 3022 * * * * * * * * * 854 * * * * 18 0 * * * * * * 3096 0 0 V 19 1977 * * * * 5572 * 1896 * 3752 * * * * * 4082 4796 1801 * * 19 0 * * * * * * 3022 0 0 L 20 4144 3288 * * 4952 * * 2008 * 1970 5088 * * * * * * 1860 * * 20 0 * * * * * * 3022 0 0 G 21 1341 * * * * 1485 * 5261 * 4765 * * * * * * 5543 2612 * * 21 0 * * * * * * 3022 0 0 G 22 3778 * * * * 109 * * * * * * * * * * * * * * 22 0 * * * * * * 3022 0 0 L 23 4212 * * * 5088 * 4913 2159 * 1001 5632 * * * * * 4621 3336 * * 23 0 * * * * * * 3022 0 0 L 24 5993 * * * 5088 * * 3487 * 650 * * * * * * 4717 2698 4784 * 24 0 * * * * * * 3022 0 0 L 25 4657 5405 * * 4515 * * 1869 * 927 6169 * * * * * * 3658 * * 25 0 * * * * * * 3022 0 0 L 26 * * * * 3409 * * 4430 * 252 * * * * * * * 5643 * * 26 0 * * * * * * 3022 0 0 T 27 1383 * * * 5572 3669 * 4011 * 2895 4784 * * * * 3365 4833 2718 * * 27 0 * * * * * * 3022 0 0 I 28 2154 5988 * * 5671 4221 * 2949 * 1232 * * * * * * * 2932 * * 28 0 * * * * * * 3022 0 0 L 29 5237 5088 * * 5906 * * 1225 * 1518 4346 * * * * * * 3305 * * 29 0 * * * * * * 3022 0 0 V 30 5632 5367 * * 5572 * * 2121 * * 5365 * * * * 3049 1932 1749 * * 30 0 * * * * * * 3022 0 0 L 31 3020 * * * 2183 * 4765 4125 * 1987 * * * * * * 5137 5029 4822 2213 31 0 * * * * * * 3022 0 0 A 32 2897 4498 * * * 3523 * 1661 * 2023 * * * * * * 3776 3334 * * 32 0 * * * * * * 3022 0 0 M 33 * * * * 5137 * * * * 356 2396 * * * * * * * * * 33 0 * * * * * * 3022 0 0 W 34 * * * * 6085 * 3592 * * * * * * * 5881 5261 * * 1228 1209 34 0 * * * * * * 3022 0 0 K 35 * 4784 * * * * * 5127 230 * * * * * 3596 * * * * * 35 0 * * * * * * 3022 0 0 V 36 3366 1513 * * 6051 * * 6014 4430 2122 5137 * * * 3981 * * 2696 * * 36 0 * * * * * * 3022 0 0 G 37 * * * * * 105 * * * * * * * 4765 4913 * * * * * 37 0 * * * * * * 3022 0 0 F 38 * * * * 0 * * * * * * * * * * * * * * * 38 0 * * * * * * 3022 0 0 F 39 * * * * 0 * * * * * * * * * * * * * * * 39 0 * * * * * * 3022 0 0 K 40 * * * 4952 * * * * 343 * * 4389 * * 4129 * 4316 5367 * * 40 36 5347 * 2585 263 * * 3022 1000 0 R 41 * * * * * * * * * * * * * * 39 5223 * * * * 41 0 * * * * * * 3097 0 0 N 42 * * * * * 4345 * * 1701 * 5132 1838 * 4619 2713 4660 3292 * * * 42 0 * * * * * * 3004 0 0 R 43 5706 * * 4554 * * * * 2168 4105 * * * 3583 988 * 5109 * * 4603 43 86 4107 * 2322 322 * * 2987 1000 0 P 44 4220 * * * * * 3446 * 2808 3410 * * 806 * 4454 * * * * * 44 0 * * * * * * 2743 0 0 P 45 * * * 2523 * * * 3765 2991 * * * 1149 3714 * 3330 * * * * 45 0 * * * * * * 2759 0 0 L 46 * * 3857 2859 * 3717 * * 2863 3388 3618 2886 * 2759 * 4009 4117 * * * 46 0 * * * * * * 2971 0 0 E 47 2328 * * 2351 * 3736 * * 3735 * 2193 * * 3658 * 3781 3574 * * * 47 0 * * * * * * 2973 0 0 E 48 3904 * 2207 953 * 3658 * * * * * * 3050 * * * * * * * 48 0 * * * * * * 2973 0 0 D 49 3881 * 1729 827 * * * * * * * 3904 * * * * * * * * 49 0 * * * * * * 2973 0 0 D 50 3574 * 1293 3658 * * * * 3050 * * 2101 * * * 3736 * * * * 50 0 * * * * * * 2973 0 0 E 51 3527 * 3509 1676 * * 3302 * 3544 * * * * 1619 * * * * * * 51 0 * * * * * * 2903 0 0 E 52 * * 3027 1083 * 2921 * * * * * 2872 * 2870 * * * * * * 52 0 * * * * * * 2694 0 0 G 53 * * * 2269 * 2468 * * * * * * * 2252 2328 2301 * * * * 53 0 * * * * * * 2495 0 0 E 54 * * 2252 340 * * * * * * * * * * * * * * * * 54 0 * * 0 * * * 2495 0 0 //