HHsearch 1.5 NAME c2kcvA_ FAM FILE c2kcvA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2kcvA_.a3m DATE Tue Mar 9 05:24:33 2010 LENG 99 match states, 99 columns in multiple alignment FILT 101 out of 12050 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.8 EVD 0.4609 -0.2729 SEQ >ss_dssp CCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTSSCCCCC >sa_dssp EEDEDDEDCBCEACDCBEEEDBDEACDCADCACEEDDDCBCAACCAADABBEDEEBDCABEBABDACDCAEEECEEECBDCADDABEDACEEDEEDDEE >ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 947898999999999998298167767788887653200123456788887643007999999999997313325999999999999986126775249 >Consensus exPxxxxxxxxlaxxyxxxgxxxxAxxxxxxalxxxpxxxxxxxxlgxxxxxxgxxxxAxxxxxkalxlxxxxxxxxxxxxlxxaxxxxxxxdxxxxxx >c2kcvA_ EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAKLKAEGLEHHHHHH >UniRef50_A0C1H1(336-432:552) Chromosome undetermined scaffold_142, whole genome shotgun sequence n=1 Tax=Paramecium tetraurelia RepID=A0C1H1_PARTE E=9e-10 s/c=0.67 id=11% cov=99% QSPDSSILYNNKGLSLFRMKRYEEALQYYNLAKQLNPKIAEYDSNIASALERINRFEEALQYYDSAIQ--KNQENSQFYNSKANTLMQMKKFQEALHYY >UniRef50_P16522(397-460:626) Anaphase-promoting complex subunit CDC23 n=11 Tax=Saccharomycetaceae RepID=CDC23_YEAST E=0.0005 s/c=0.71 id=14% cov=59% -----------IANYYSARQEHEKSIMYFRRALTLDKKTTNAWTLMGHEFVELSNSHAAIECYRRAVD------------------------------- >UniRef50_UPI0000DB76DF(275-366:525) PREDICTED: similar to peroxin 5 isoform 2 n=1 Tax=Apis mellifera RepID=UPI0000DB76DF E=0.0005 s/c=0.49 id=12% cov=90% QDENNSEAWLLLGKTLAENEQDPLAISALKRCLNLDPSNGPALMALAVSYTNESYQNQACITLKEWLLKNEKYKDVH--EEVKNLYIQAA--------- >UniRef50_Q2GAC6(10-102:773) Glycosyl transferase, group 1 n=1 Tax=Novosphingobium aromaticivorans DSM 12444 RepID=Q2GAC6_NOVAD E=1e-05 s/c=0.55 id=14% cov=82% ----------------RDAGDWLAAAKCYSRYLRFRRRDAGIWVQLGNVLKECGRFQQSERAYLRAMRLGLNDSDLHLqLGHLSKVRGQAGSARHHY--- >UniRef50_UPI000194C015(723-804:999) PREDICTED: similar to sperm associated antigen 1 n=1 Tax=Taeniopygia guttata RepID=UPI000194C015 E=7e-05 s/c=0.59 id=15% cov=55% ------------ALCYLKLYKYEEAKRDCDHVLQIEDSNIKAFYRRALAYKGLQNYQASADDFSK---------------------------------- >UniRef50_D2QPV9(190-265:300) Putative uncharacterized protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QPV9_9SPHI E=0.0002 s/c=0.62 id=14% cov=77% EKPDDAAVLQAAASYNVSKGRnLDQALGWIDKSIAKQENFRNLYI-KSQILAKMGKYTDALPFAEKALALGQSSNDQ----------------------- >UniRef50_B3QN45(224-323:330) Putative uncharacterized protein n=1 Tax=Chlorobaculum parvum NCIB 8327 RepID=B3QN45_CHLP8 E=0.0003 s/c=0.47 id=15% cov=26% -------------------------------------------------------------------------GNNTARQYLAMAENRQRERDREFEH- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * * 726 * * * * 2496 * * * * 2198 * * * * * * 1 0 * * * * * * 6173 0 0 D 2 5543 * 1726 3846 * * 3982 * * * 5134 2201 * 2623 * 2887 * * * * 2 0 * * * * * * 7815 0 0 P 3 * * * * * * * * 5612 * * * 61 * * 5573 * * * * 3 0 * * * * * * 8289 0 0 E 4 6086 * 2398 3303 4352 4918 3996 * 3671 5558 * 2085 * 4013 4154 4378 4384 * * * 4 0 * * * * * * 8516 0 0 D 5 5917 * 1464 3821 4830 * 4077 * 5799 * * 1879 * * * 3407 6205 6102 6128 5094 5 0 * * * * * * 8466 0 0 P 6 2225 * 4462 4374 6258 4375 6112 4455 * 4548 * * 1739 * * 3202 6166 4530 6512 4266 6 18 6347 * 0 * * * 8670 1000 0 F 7 6183 * 3523 3148 2756 6258 5944 3864 4653 3373 6182 5021 6213 4777 3503 4080 4126 5347 5316 4177 7 20 6190 * 0 * * * 8670 1000 0 T 8 1314 * * * 6157 5234 * 3863 * 2625 * 4286 4648 * * 4671 3247 4625 * 4317 8 0 * * * * * * 8773 0 0 R 9 6210 5140 5135 * 6403 * 4145 * 5276 1713 5075 5188 * 5099 3461 * * 5158 2764 2488 9 0 * * * * * * 8774 0 0 Y 10 6301 4078 6059 6255 2469 4985 5216 5397 5088 4364 6589 3196 * 6225 5347 5292 5291 4634 * 1688 10 0 * * * * * * 8792 0 0 A 11 3170 * 5919 4059 6406 3224 4316 5242 3373 4777 * 2201 * 4382 3878 3589 6302 * 6114 4635 11 0 * * * * * * 8792 0 0 L 12 5090 * * * * * 6191 2923 5546 1013 4071 * * 5452 3074 6258 * 3889 6662 5912 12 0 * * * * * * 8787 0 0 A 13 972 6236 * * * 1377 * 6112 * * * * * * * 4171 * 5519 * * 13 0 * * * * * * 8812 0 0 Q 14 3829 6544 4449 4626 5420 4983 4945 4017 4401 2631 4398 3187 * 4654 4503 5055 5620 3861 6272 3303 14 0 * * * * * * 8812 0 0 E 15 1567 3224 6008 3923 6500 6281 5462 3929 6439 3317 * * * 6740 * 3677 4044 3839 * 4974 15 0 * * * * * * 8825 0 0 H 16 4919 5299 * 6680 2936 * 3685 * * 2229 6655 * * 5140 5071 6438 * * * 1216 16 0 * * * * * * 8910 0 0 L 17 4539 * 5082 5057 2979 5200 4771 4213 4981 2781 4447 5033 * 4162 3394 4283 6437 4140 * 2959 17 0 * * * * * * 8925 0 0 K 18 4963 * 5503 2997 6588 5543 4469 * 2418 3432 * 4002 * 3038 2892 3615 6585 6522 6338 5075 18 0 * * * * * * 8930 0 0 H 19 4203 6427 6736 5746 5967 * 5736 6840 3320 1840 4240 5738 * 2543 4460 4556 3490 4245 * 6604 19 17 * 6378 * * * * 9056 0 0 D 20 * * 4096 2901 6583 1205 6364 * 2987 6370 * 3847 * 4152 4248 5708 * * * 5997 20 0 * * * * 0 * 9036 0 1000 N 21 5554 * 2430 2523 * 5932 6584 * 2975 4689 6718 3107 * 2985 2610 * * * * 6540 21 0 * * * * * * 9028 0 0 A 22 5344 * 5637 * 3489 6592 3982 3662 6878 3284 5659 6393 3330 5510 5008 6707 4908 5719 3747 1827 22 0 * * * * * * 9028 0 0 S 23 3490 * 2440 1981 * 6727 5630 6404 3719 6189 6744 4123 5537 3990 4294 3803 4292 5840 * * 23 0 * * * * * * 9063 0 0 R 24 3458 6147 4008 1758 * 4718 * * 2697 4622 6795 4785 * 3097 4155 4382 5173 * * 6595 24 13 6766 * 0 * * * 9063 1000 0 A 25 487 4660 * * * 4203 * * * * * * * * * 2682 6219 5420 * * 25 0 * * * * * * 9063 0 0 L 26 4804 6676 * 3167 6407 * * 1887 3744 2005 6616 6147 * * 4701 5436 6587 3262 6560 5263 26 0 * * * * * * 9063 0 0 A 27 3198 * 3972 2647 5877 5156 5560 5602 2835 6480 7001 3720 5023 3770 3753 4249 4451 5023 6919 5048 27 0 * * * * * * 9063 0 0 L 28 2622 3830 3334 4066 4384 * 3966 5061 6348 3066 5759 4581 * 7163 6571 5007 4110 5069 6670 2960 28 0 * * * * * * 9063 0 0 F 29 3502 4018 * * 1919 5617 * 4876 * 2306 5395 6398 * * * 5562 * 6684 6678 1984 29 0 * * * * * * 9063 0 0 E 30 6670 * 2617 2329 * * 6635 5541 2666 4358 6606 4139 * 3554 3060 4445 4366 5399 * * 30 13 6751 * 2585 263 * * 9063 1000 0 E 31 3539 5655 4268 3380 * * 6789 4838 2109 6701 6744 4286 * 2772 2629 5493 4308 * * 5688 31 0 * * * * * * 9063 0 0 L 32 1155 4987 * * 5728 4954 * 4474 * 2852 * 6570 * * * 3451 4949 3062 * 5029 32 0 * * * * * * 9063 0 0 V 33 4330 * 6138 6470 6147 5437 6688 1910 5733 1483 * 6716 * * * 4693 4710 2944 * 5732 33 15 6625 * 3000 193 * * 9063 1000 0 E 34 3448 * 3818 2454 * 4946 6548 6417 2692 4339 6890 4749 6910 4010 3778 3404 3520 5290 * * 34 23 5977 * 2949 200 * * 9063 1587 0 T 35 4208 * 4689 4531 6371 6825 6744 2631 3802 1874 4791 6480 * 4276 3799 5660 5192 3679 6407 5649 35 73 4337 * 1963 428 * * 9063 3409 0 D 36 4567 6695 2206 3185 6125 4692 4077 6219 4115 5582 * 3001 * 4349 3734 4024 5098 5744 6348 4427 36 55 4749 * 1789 493 * * 9063 2857 0 P 37 4729 * 4944 4118 * 6570 6398 * 4108 * * 5764 668 4371 5440 4238 6869 * * 6470 37 0 * * * * * * 9063 0 0 D 38 5621 * 2513 2998 * 3208 4769 * 3204 5133 * 2685 6726 4009 5177 3463 4265 * * * 38 62 6571 4987 2585 263 * * 9061 1000 0 Y 39 5106 4622 2723 5010 3501 6607 3096 6584 5292 4084 6662 3086 * 5943 6320 4572 5713 5089 4442 2791 39 26 5801 * 1338 726 549 1659 9032 1719 2410 V 40 2446 5968 5731 4668 4551 3631 6633 4230 6622 3845 6837 * 2413 6825 6588 3440 4387 3782 6066 4940 40 14 6646 * 1585 585 0 * 9066 1000 1000 G 41 4321 * 2877 2817 5041 5010 5121 6998 3865 3704 5203 4283 3567 4723 3827 5612 5815 5989 3993 4621 41 25 5880 * 915 1090 * * 9061 1662 0 T 42 1602 5489 5690 * * 3066 6544 3724 * 3900 6113 6398 4153 6635 6719 3686 3960 3438 * 5657 42 0 * * * * * * 9061 0 0 Y 43 5052 6752 6696 * 4696 * 3365 5756 * 2452 5628 * * * 3905 6401 6509 5058 2475 1764 43 0 * * * * * * 9061 0 0 Y 44 4895 6863 * 5487 3264 5251 5140 3354 4748 2800 4928 3513 * 6375 4779 3781 4341 4194 * 2713 44 20 6187 * 2322 322 * * 9061 1000 0 H 45 4232 * 5007 4190 6627 4580 4774 6473 5606 2898 5629 1998 * 3329 2721 5790 6549 6732 5638 5245 45 0 * * * * * * 9061 0 0 L 46 4933 5703 * 6687 6884 * * 3279 3636 1365 3973 * * 5448 2747 * 6189 4755 * 3796 46 0 * * * * * * 9064 0 0 G 47 1240 * * 6511 * 956 * 5979 * * * * * * * 5666 6119 * * * 47 0 * * * * * * 9064 0 0 K 48 4021 6562 3382 4118 6533 5366 3781 4030 3357 3587 6805 4052 * 3619 3667 4108 * 3691 * 4065 48 0 * * * * * * 9064 0 0 L 49 2109 3769 6825 4928 4229 6189 * 2873 * 2511 6501 * * 6370 * 4619 3746 3106 * 5657 49 0 * * * * * * 9064 0 0 Y 50 5508 5390 * * 3720 * 3631 * 6492 1732 4294 6673 * 4576 4795 6606 * * * 1571 50 0 * * * * * * 9064 0 0 E 51 3703 5622 4517 3534 4462 5548 4060 5005 5745 3023 5542 4211 * 4441 3273 4782 5176 3657 6119 3462 51 0 * * * * * * 9064 0 0 R 52 3249 * 3790 3105 6896 4418 3805 5852 2990 3611 5716 5170 * 3227 3630 4392 4841 5897 * 5583 52 0 * * * * * * 9064 0 0 L 53 4235 * 6375 4665 6418 5387 * 5101 3214 1472 3647 4482 * 2989 6562 5639 4428 5357 6583 * 53 18 6369 * 2000 415 * * 9064 1000 0 D 54 * 5164 5831 4043 * 874 5586 * 2856 6195 * 3862 * 4061 5161 6741 6688 * * * 54 14 6660 * 3459 138 * * 9064 1000 0 R 55 5688 * 2637 3185 * 6375 4809 * 3346 4447 4545 2880 * 2814 2445 6218 * * * * 55 31 6511 6593 3459 138 * * 9064 1000 0 T 56 6128 5741 4448 * 3191 * 5272 4360 4704 3204 5556 3931 3781 * 5763 6688 5085 6464 3616 1835 56 0 * * * * 0 * 9024 0 1000 D 57 3651 * 2425 2347 * 4813 5556 5569 3583 6375 * 5111 5540 4030 5110 2931 4297 5072 * 6404 57 21 6140 * 0 * * * 9064 1000 0 D 58 3352 * 3082 1799 * 4679 * * 2874 4874 * 5006 5507 2998 4478 5503 5068 6370 * * 58 0 * * * * * * 9064 0 0 A 59 355 6423 * * * 6188 * * * 6189 6613 * * * * 3126 6369 4569 * * 59 0 * * * * * * 9064 0 0 I 60 3794 * * 2943 6596 * 6459 2509 3642 2281 4282 7883 * 4591 4163 * 6492 2975 * 5420 60 0 * * * * * * 9064 0 0 D 61 2991 * 3049 2239 7066 5897 5751 5497 3458 4652 * 4813 5051 3069 3819 4300 5095 6645 * * 61 0 * * * * * * 9064 0 0 T 62 2834 3693 3893 5250 4809 * 4660 4992 6629 3651 3522 4856 * 4629 * 3352 4366 4316 6803 3002 62 16 * 6545 * * * * 9064 0 0 Y 63 4748 4758 * * 2144 * 6461 4504 * 1958 * 6395 * * 6105 6186 * 5683 5356 1724 63 51 * 4844 * * * 0 9012 0 1000 A 64 4951 * 4304 2614 6369 * 4942 * 2874 5386 5637 3440 * 2533 2874 3897 4841 5308 * * 64 30 * 5605 * * * 0 9031 0 2901 Q 65 4405 * 4738 3561 * 6471 6405 4590 1550 * * 4967 * 2794 2509 5661 4961 5578 * * 65 18 6361 * 2000 415 1544 606 8922 1000 3707 G 66 1099 4938 * * 5483 2614 * 6200 6147 3767 * * * * * 4438 6025 2907 * 5722 66 65 6363 4972 3459 138 394 2064 9019 1000 2943 I 67 4567 * * 6399 4963 * * 2247 6111 1325 3038 * * 6819 5726 6638 5316 3484 * 6011 67 65 5539 5487 1837 474 2038 402 9129 1786 2841 E 68 2668 * 3127 2265 5592 5085 * * 4002 4646 * 6229 * 3308 3849 2998 4370 * * 6593 68 66 6481 4890 3459 138 736 1324 9143 1000 3382 V 69 4768 * 6040 5366 5439 6206 * 2882 5416 1155 3806 * * 5401 4927 6436 4895 3514 * 5770 69 102 4822 4929 3512 132 1283 763 9115 2401 3454 A 70 2588 5324 2698 4575 4942 4932 5427 6588 4289 5182 6349 3162 6549 6302 5494 2963 4460 3914 6186 6410 70 68 5584 5312 3284 156 1014 986 9129 1675 3850 R 71 3688 * 4415 4048 * 4804 5420 3582 3484 4409 5719 6540 2107 3984 3458 3748 4938 * * 6286 71 50 5437 6510 1051 950 742 1315 9120 1790 3394 E 72 3844 * 2684 2742 6281 4715 6344 5920 3771 * * 2955 4864 4534 3127 3694 5530 4602 6472 * 72 62 5641 5493 3515 132 559 1639 9124 1682 2358 E 73 3714 6863 4071 3500 6535 4759 4373 4939 3894 3901 6443 4173 3436 2858 5580 4314 4360 5475 * 3946 73 63 4539 * 1046 956 * 0 9128 3067 2324 G 74 3950 * 3686 2813 5487 3452 4773 * 4066 5527 6487 2433 5495 4425 4153 3981 6266 5173 * 4098 74 14 6746 * 3000 193 1560 598 9115 1000 2324 T 75 5492 * 2107 3115 6728 * 4833 * 3860 6576 * 1776 5371 6427 * 4364 4307 4944 * 4413 75 69 6380 4863 2000 415 * 0 9123 1000 1811 Q 76 2811 6468 4138 4386 6098 4670 * 4399 4400 3162 4373 6247 6106 3209 4136 3817 3807 3352 * * 76 18 6357 * 0 * 2161 365 9064 1000 3169 K 77 3029 * 6399 3463 * 3515 2708 4603 2280 6119 * 4607 * 3121 4383 5328 5503 6529 * 6467 77 102 3874 * 1032 969 0 * 9075 3771 2676 D 78 1791 * 4480 4182 5390 6476 * 3372 5015 3823 * 6165 6239 * 4859 4301 2789 3692 5885 5231 78 48 4923 * 2510 278 * * 9114 2480 0 L 79 4212 * * * 3333 * 4520 4291 6452 1630 3684 4889 6343 5185 3655 4742 6420 6251 5471 3291 79 20 * 6175 * * * * 9038 0 0 S 80 2963 * 5352 5072 4746 3996 4467 5441 4941 3573 * 3637 6249 3550 3351 3074 4586 5277 6358 4121 80 34 5412 * 1986 420 * 0 9010 1753 1000 E 81 4079 6543 4030 1604 * 4348 6246 * 3540 4748 * 4098 6308 4044 3055 5337 6191 5112 * 4829 81 0 * * * * 0 * 9037 0 1000 L 82 2697 * * 5860 * * * 2892 5500 1118 3302 * 6424 * 6197 5384 5370 * * 4788 82 37 5291 * 1950 432 * * 9022 1855 0 Q 83 2210 * * 3370 5342 2956 5494 4585 4243 3954 6225 6527 * 2713 3348 5281 * 5280 * 5263 83 0 * * * * * * 9016 0 0 D 84 3851 * 3259 2954 6369 4097 * 4570 3727 3792 * 3223 * 3228 3444 4235 5905 5440 * 4708 84 0 * * * * * * 9016 0 0 A 85 1327 5191 4670 * 6288 6584 4724 4491 4780 3893 * 5834 6042 4441 4521 4365 4252 3776 * 5094 85 0 * * * * * * 8943 0 0 K 86 4755 * * 4534 4638 4435 5021 4707 5364 2157 5006 6107 5905 3943 3900 * * 4519 6311 1914 86 0 * * * * * * 8943 0 0 L 87 * * 4600 3609 5966 4685 4458 6179 3588 1833 3920 3443 * 5223 5125 5234 4555 4263 4987 4937 87 18 6300 * 1585 585 * * 8917 1000 0 K 88 3928 6146 4593 3845 * 5888 * 5851 1737 4634 5046 5178 * 4193 2286 3510 5975 6221 * * 88 22 6020 * 1000 1000 * * 8867 1000 0 A 89 1481 6195 4732 3220 4882 4901 * 3884 5055 3474 5027 5616 * 3974 6134 * 4278 4398 * * 89 0 * * * * * * 8778 0 0 E 90 4174 4960 4255 2112 * 4007 * 3564 3508 3649 4886 4700 4878 4507 3111 4963 * 5942 * * 90 0 * * * * * * 8702 0 0 G 91 2922 * 3768 3911 * 1885 * 5482 3185 5695 * 4191 5745 3796 4182 4847 4258 5772 * * 91 0 * * * * * * 8665 0 0 L 92 4656 * * 5612 2715 5416 * 2746 4595 2278 5486 * 4669 5723 3962 * 3719 3557 5598 4597 92 0 * * * * * * 8473 0 0 E 93 4382 * 1293 1713 * * * * 4388 4490 * 4644 * 4576 5451 5653 5507 * * * 93 0 * * * * * * 8429 0 0 H 94 4215 * * 2901 5441 * 2293 5147 4249 5113 * 5125 3373 4188 5047 4056 * * * 2286 94 0 * * * * * * 7987 0 0 H 95 1805 * 4955 3878 * * 2016 4827 3367 * * 3900 * * * 4874 3332 4887 * * 95 0 * * * * * * 7634 0 0 H 96 * * * 3818 2857 * 1456 4998 * 3193 * 3852 * * 3854 4790 * 4781 * 3735 96 0 * * * * * * 7423 0 0 H 97 4289 * 4421 3018 * * 844 4542 * 4474 * * * 4405 * * * * * 3532 97 0 * * * * * * 6917 0 0 H 98 * * * 3893 3742 * 926 * * * * * * * * * * * * 1592 98 0 * * * * * * 5760 0 0 H 99 * * * * * * 767 * * * * * * * * * * * * 1279 99 0 * * 0 * * * 4011 0 0 //