HHsearch 1.5 NAME c2kc1A_ FAM FILE c2kc1A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2kc1A_.a3m DATE Sat Aug 28 18:24:13 2010 LENG 91 match states, 91 columns in multiple alignment FILT 48 out of 52 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.4248 0.3625 SEQ >ss_dssp CCCCCCSSCEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHCGGGGGSCTTTEEEEEECSSTTTCEEECTTSBTGGGTCCTTCEEEEEECC >sa_dssp EECAEEEEBBCACABBDEDEDEBDACCEBCBDCABDBADDEBEDAEECEEEDBBACBCDEDEEEBEDAEDECCAEEBEBEEDBDABAEDCE >ss_pred CCCCEEEEEEEEEECCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHEEEECCCCCCCCCEECCCCCCHHHCCCCCCCEEEEEECC >ss_conf 9874389999999324785888997763218999999997413012688334034506788745423158752343266889668988629 >Consensus xxxxxxmxxlrixIxxxxvxKxlxFxpxxtVxdaxxxIxxklxxxxxxxxxnYGLFlpxxxxkxgxwLdxxrxlxxYxlxxxxxLEyRxKx >c2kc1A_ GIDPFTMVALSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQ >UniRef50_Q54QB9(175-251:1312) Rho GTPase-activating protein gacG n=1 Tax=Dictyostelium discoideum RepID=GACG_DICDI E=1e-05 s/c=0.66 id=23% cov=86% -------VILTVKVPEVGLTKKILFDKVETIKDAILLVIEKLP-PGCLDASEYNLFL----PQKNQWCKIDSRFSKYQFKENQEIEFKK-- >UniRef50_Q4S4Q0(93-180:1101) Chromosome 2 SCAF14738, whole genome shotgun sequence n=3 Tax=Tetraodontidae RepID=Q4S4Q0_TETNG E=4e-23 s/c=1.23 id=25% cov=80% ----LTMMVFRVGIPDIKQTRCLQFDLDCTVWTAKQQIICSLNESL-WDVYNYGLFQPAGEGRDAKFLEEERALRNY-------------- >UniRef50_C4QJG6(1-86:3163) Talin, putative n=2 Tax=Schistosoma mansoni RepID=C4QJG6_SCHMA E=2e-19 s/c=1.12 id=33% cov=93% ------MLAVNLLIRFPNSGNCysLKFTKDITVYDLCHEVQSKIREAACLNPLEYGIFVPDPDPKHSFWLDNSRMLSYYHFCDNFEVQYRCK- >UniRef50_UPI0000E484B6(155-239:702) PREDICTED: similar to Shank2E, partial n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E484B6 E=3e-19 s/c=1.13 id=16% cov=93% ------LINIRIKIADTEIQKSVCFRKDERIWNMKQHIL-QCPDVELPDSRNHGFYMLPQNNKAGKFLDEERLISDYPIdKKRPYLEFRYKK >UniRef50_Q54C52(72-152:1192) Myotubularin-related protein n=1 Tax=Dictyostelium discoideum RepID=Q54C52_DICDI E=4e-12 s/c=0.90 id=22% cov=86% ---------LRISIPELNVISLFKIDRDSTVKELLYQVISK----KSLQMNVYSLYLMPNKRVDfGMWLDDSKPLFLYELNDNDLVECKRR- >UniRef50_P54633(3-83:2493) Talin-A n=3 Tax=Eukaryota RepID=TALA_DICDI E=7e-19 s/c=1.17 id=28% cov=89% -------ISLKINIVGANTVKTLRFAPDMCIQECCTHIFEKTNEGGPD----HGLYQAHIEGKQSaRWLAMEKTLQFYDINSDQQLDYKKKH >UniRef50_C4Q731(9-88:615) Sh3 and multiple ankyrin repeat domains protein 1,2 (Shank1,2), putative n=1 Tax=Schistosoma mansoni RepID=C4Q731_SCHMA E=4e-14 s/c=0.99 id=27% cov=82% ----------------DNLGKTFSFSPTDLIVDVKLTAIKRSNSCLKDE-LNYGLFLPPSKGKAGKFLQEDRMLLDYPFESSvGHLELKYKQ >UniRef50_B0E5N3(4-93:1375) Talin, putative n=4 Tax=Entamoeba RepID=B0E5N3_ENTDI E=8e-13 s/c=0.83 id=32% cov=93% ----INIVSLVLQVLFGNdrkmlSTKKMQFNFTATVYDILVAIKER--QQSEVNMEEYALFLPKDKTReKGQWMIPKRTIESYDLVTDDEVWFRKR- >UniRef50_Q75JH9(8-80:1503) Actin binding protein n=1 Tax=Dictyostelium discoideum RepID=Q75JH9_DICDI E=3e-11 s/c=0.95 id=30% cov=74% ---------LKVRLVDKKVFKKFSFYPKKTVKEARLFIAAEL----EVDPDQYGLFLPPKDDQNGVWFRDDYPLDFYGL------------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 I 2 * * * * * * * 0 * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 D 3 * * 0 * * * * * * * * * * * * * * * * * 3 0 * * * * * * 1000 0 0 P 4 * * * * * * * * * * * * 0 * * * * * * * 4 0 * * * * * * 1000 0 0 F 5 * * * * 1351 * * 1694 * 3041 2495 * * * * * * * * * 5 0 * * * * * * 2626 0 0 T 6 2495 * * * * * * * * * * 2257 * * * 1745 1666 * * * 6 0 * * * * * * 2626 0 0 M 7 * * * * * * * 3293 * 3031 499 * * * * * * 3877 * * 7 0 * * * * * * 3667 0 0 V 8 5184 * * * * 4678 * 3298 * 1682 2516 * * * * 5012 * 1670 * * 8 0 * * * * * * 4194 0 0 A 9 2860 * * * * * * 3605 * 4675 * 3948 * * * 1642 4095 1750 * * 9 0 * * * * * * 4194 0 0 L 10 * * * * 3549 * * 2809 * 728 * * * * * * * 2573 * * 10 0 * * * * * * 4460 0 0 S 11 * * * * * * * * 3229 * * 4321 * * 1137 2206 3067 4248 * * 11 0 * * * * * * 4518 0 0 L 12 * * * * * * * 1307 * 1670 * * * * * * * 1829 * * 12 0 * * * * * * 4518 0 0 K 13 5111 * * * * 2504 4840 * 1741 3860 * 4990 * 3675 3034 3176 4915 5946 * * 13 0 * * * * * * 4518 0 0 I 14 * 4921 * * 4479 * * 619 * 3145 * * * * * * * 2661 * * 14 0 * * * * * * 4518 0 0 S 15 4211 5608 * 5284 * * 5946 * * 4248 * 5088 1373 3402 4321 3320 4577 2958 * * 15 0 * * * * * * 4518 0 0 I 16 * 4915 1353 2642 3284 4129 * 3159 4840 5333 * * * * * * 4577 4583 * * 16 191 3010 * 1000 1000 * * 4518 2246 0 G 17 3431 * 3117 * * 2798 * 4452 3125 2242 * 5500 3213 * 4404 * 4248 4416 * * 17 59 4631 * 1000 1000 * * 4570 1302 0 N 18 * * * 4432 * 2523 4220 * 2662 * * 1265 * 3191 4552 * * * * * 18 69 4411 * 2322 322 * * 4592 1000 0 V 19 * * * * 4753 * * 2680 * 3643 * * * 2254 * 3485 4213 1419 * * 19 0 * * * * * * 4593 0 0 V 20 * * * * 4397 3721 6203 3492 4196 * * * * 3059 4980 6585 1317 2857 * 5773 20 0 * * * * * * 4611 0 0 K 21 * * * * * * * * 180 * * 4594 * * 5459 4230 * * * * 21 0 * * * * * * 4605 0 0 T 22 5093 1689 * * 5004 * * * 2564 4230 4215 * * * * 3839 1819 * * * 22 61 4594 * 1000 1000 * * 4605 1000 0 M 23 * * * * 2684 * * 2632 * 1538 2147 * * * 4629 * 5136 4502 * * 23 0 * * * * * * 4605 0 0 Q 24 4069 4502 * 4850 * * * * 2815 4570 * * * 1519 2012 3634 * * * * 24 51 4850 * 2000 415 * * 4605 1000 0 F 25 * * * * 214 * * 4235 * 4221 * * * * * * * 5004 * * 25 0 * * * * * * 4636 0 0 E 26 4317 * 1434 3921 * * * * * * * 2932 4183 4746 3997 3740 3788 4860 * 4442 26 0 * * * * * * 4636 0 0 P 27 5160 * * * 4487 * * 4860 2897 4788 * * 922 5004 3856 4157 5569 5826 * * 27 0 * * * * * * 4636 0 0 S 28 5086 5020 1384 3972 * 4935 * * 4442 * * 3869 * 5160 * 2559 3229 4597 * * 28 0 * * * * * * 4636 0 0 T 29 2319 5487 3060 3593 * * * 3635 4115 6070 3678 * * 4190 5851 3355 2528 * * * 29 0 * * * * * * 4636 0 0 M 30 6082 4317 * * 5004 * * 4691 * 2629 4782 * 3811 * 4589 3835 1046 * * * 30 0 * * * * * * 4636 0 0 V 31 * * * * * * * 1652 * * * * * * * * * 552 * * 31 0 * * * * * * 4636 0 0 Y 32 5121 * * * 4746 5160 * * 2832 * * * * 4317 * * * 4909 1344 1795 32 0 * * * * * * 4636 0 0 D 33 3917 * 1161 1990 * * * 6416 6135 5826 * 4589 * 5160 * 6045 4309 4149 * * 33 0 * * * * * * 4636 0 0 A 34 869 3964 * * * * * 4487 * 3406 4589 * * * * 4943 * 2512 * * 34 0 * * * * * * 4636 0 0 C 35 * 1576 * * * * * 3418 1227 3356 * * * * 4442 * * * * * 35 0 * * * * * * 4636 0 0 R 36 5121 4670 * 5160 * * 4600 * 3101 3052 * * * 1463 3121 * 4317 4487 * 4235 36 0 * * * * * * 4636 0 0 M 37 4487 * * 4600 4442 * 3447 5773 3930 3418 4675 * * 2007 2591 5209 4909 3561 * * 37 0 * * * * * * 4636 0 0 I 38 4909 4728 * * * * * 799 * 5004 * * * * * * * 1631 * * 38 0 * * * * * * 4636 0 0 R 39 4442 * * * 4317 * * 2737 4487 1428 * * * 4600 2120 4670 * * * 5209 39 61 * 4589 * * * * 4636 0 0 E 40 2576 2413 3774 1699 * 4640 * * 4861 * * * * * * 3366 4018 5053 * * 40 0 * * * * 0 * 4534 0 1000 R 41 4522 * * 3636 * * * * 1311 * * * * 3464 2955 3286 2729 * * * 41 148 * 3356 * * * * 4636 0 0 I 42 * 4483 * * 2592 * * 3297 * 1158 * * * * * 4754 4203 2753 * * 42 152 * 3326 * * * 0 4368 0 1692 P 43 4403 * 5349 * * 3912 * * * * * 2046 1673 * 3533 2816 3688 * * * 43 86 * 4111 * * 1886 455 4140 0 2455 E 44 * * 3038 1458 * * 5112 * 3952 * 3909 4691 * 2106 4575 4606 * * * * 44 41 * 5143 * * 1939 436 4180 0 2418 A 45 2200 4702 * 3998 * 4631 * * * 4717 * 4873 4275 4085 * 1835 3346 4441 * 4898 45 49 4909 * 0 * 1042 959 4271 1000 2572 L 46 3692 * 4179 3640 * 3572 * * 4103 1368 * 5085 * 3936 * 3030 * 4634 * * 46 34 * 5443 * * 1000 1000 4528 0 1699 A 47 5736 3550 * 3441 4818 5013 5521 5716 2322 3249 * * 3195 3884 5131 3810 3125 * * * 47 226 * 2784 * * 0 * 4619 0 1635 G 48 * * 1435 * * 2203 * * * 2711 * 4415 4328 * 4781 * * 3290 5329 * 48 502 * 1768 * * 352 2207 4514 0 2529 P 49 * * 1782 3032 * 2993 4428 * * * * 2712 4168 2276 * * * * * * 49 64 * 4536 * * 389 2082 4567 0 2752 P 50 2020 * * 5090 * * * * * 4578 3266 * 1993 * * 3153 * 2219 * * 50 93 * 3996 * * 530 1702 4523 0 1928 N 51 5073 * 3577 4472 3388 * 4186 * 3872 1664 * 3392 * * 4381 2830 * * * 5423 51 0 * * * * 452 1894 4541 0 1841 D 52 * * 2519 1795 * * * * * * * 1191 * 4465 * * * 4213 * * 52 0 * * * * 0 * 4574 0 1000 F 53 * * * * 3275 * 3265 * * * * * * * * * * * * 335 53 0 * * * * * * 4099 0 0 G 54 4319 * * * * 324 * * * * * 4309 * * * 4182 4450 * * * 54 0 * * * * * * 4099 0 0 L 55 * * * * 3573 * * 4683 * 189 * * * * * * * * * * 55 0 * * * * * * 4099 0 0 F 56 * * * * 348 * * * * * * * * * * * * * * 2221 56 0 * * * * * * 4099 0 0 L 57 5966 5065 * 5686 * * * 4759 * 981 5013 * * 1914 4157 * * 4682 * * 57 75 * 4308 * * * * 4094 0 0 S 58 3003 * * * * * * 4044 * 4968 4111 * 744 * * 3465 4751 * * * 58 0 * * * * * 0 3989 0 1000 D 59 2878 * 2024 * * 3444 3897 * 4177 * * * 1498 * * 4328 * * * * 59 0 * * * * * 0 3989 0 1000 D 60 4821 4370 3156 2457 5223 4784 * 3675 4188 * * 2836 4627 4414 * 3301 4548 5096 * 5329 60 0 * * * * * 0 3989 0 1000 D 61 * * 1387 2967 * * * * 2917 * * 2301 5958 4676 6316 3529 * * * * 61 0 * * * * 0 * 3989 0 1000 P 62 5144 * 4303 * * 1238 * * * * * 3517 1950 * 4181 4449 4318 * * * 62 68 * 4440 * * * * 4094 0 0 K 63 * * * * * 5131 5942 * 1274 * * * * 2793 1820 * 4099 4165 * * 63 77 4266 * 0 * 0 * 4034 1000 1000 K 64 2072 * 2575 5390 * * 4682 * 1577 * * 4303 * 3352 5144 5686 * * * * 64 182 3076 * 0 * * * 4094 2061 0 G 65 4091 * * * * 495 * * * * * 4308 * * * 2465 * * * * 65 67 4465 * 0 * * * 4094 1069 0 I 66 * 4828 * * 4682 4093 * 2474 1640 5687 4181 6121 * 3313 3485 * * 3513 * * 66 0 * * * * * * 4094 0 0 W 67 * * * * 1354 * * * * * * * * * * * * * 877 3966 67 0 * * * * * * 4094 0 0 L 68 * 4308 * * 4303 * * * * 335 3235 * * * * * * * * * 68 0 * * * * * * 4094 0 0 E 69 4465 * 1250 1785 * * * 4318 3666 5190 * * * 5731 4303 5780 * * * * 69 0 * * * * * * 4094 0 0 A 70 4339 * 3241 1288 * * * 4308 * * 3765 3127 2630 * * 4828 * * * * 70 0 * * * * * * 4094 0 0 G 71 4449 * 2509 1471 * 2189 * * 4318 * * * * 6196 * 2893 * * * * 71 0 * * * * * * 4094 0 0 K 72 * * * * * * 5124 * 2320 * * * * * 681 3372 * * * 4303 72 0 * * * * * * 4094 0 0 A 73 3072 * * * * * * 5564 * 2096 4113 4449 2880 6553 3633 4157 2063 * * * 73 0 * * * * * * 4094 0 0 L 74 * * * * 2436 * * 3008 * 633 4440 * * * * * * * * * 74 0 * * * * * * 4094 0 0 D 75 5986 * 2818 2544 4181 2586 * * 4087 5731 * * * 3543 2595 3054 * * * * 75 0 * * * * * * 4094 0 0 Y 76 * * 2215 2511 2709 * 3728 * 4308 4181 * 5738 * * * 4318 * * * 2277 76 0 * * * * * * 4094 0 0 Y 77 * * * * * * * * * 4440 * * * * * * * * * 68 77 44 5072 * 1585 585 * * 4094 1162 0 M 78 * * 2956 4100 * 3806 4559 2831 * 3341 3606 * 1636 4165 * * * * * * 78 0 * * * * * * 4173 0 0 L 79 * * * * 2543 * * 3602 * 942 5223 * 5821 4808 * 4766 * 3203 * * 79 140 4210 4710 564 1628 * * 4173 1369 0 R 80 4565 4241 * 4448 * * 4052 * 1861 * * 2708 4014 * 2098 * 5713 4166 * * 80 62 4565 * 0 * 0 * 4457 1000 1092 N 81 4686 * 2855 4382 * 3462 * 4946 4606 5115 * 1959 * * * 2092 4204 4799 * * 81 0 * * * * * * 4479 0 0 G 82 5865 * 2839 4602 * 1693 * 5522 3793 * * 2326 5253 4507 4504 4574 * 4539 * * 82 277 2519 * 897 1111 * * 4394 1925 0 D 83 4078 * 1167 * 4213 3857 * * * * * * 1913 3224 * * * * * * 83 103 3854 * 1482 640 * * 4397 1422 0 T 84 4529 * * 1731 * * 4559 5583 * 2862 4722 * * 3102 * 5613 2615 * * 3102 84 0 * * * * * * 4397 0 0 M 85 * * * * * * * 2872 * 666 5222 * * * * * * 2276 * * 85 0 * * * * * * 4397 0 0 E 86 * * 3426 424 * * * * 4227 * * * * 4213 * * * * 4205 * 86 0 * * * * * * 4397 0 0 Y 87 * 3951 * * 1384 * * * * 4068 * * * * * * * * * 1022 87 0 * * * * * * 4397 0 0 R 88 * * * * * * * * 1244 * * * * * 791 * * * * * 88 0 * * * * * * 4397 0 0 K 89 * 4160 * * * * * * 1476 * * * * * 2088 * * * * 1517 89 0 * * * * * * 4374 0 0 K 90 * * * * * * * * 360 * * * * * 2178 * * * * * 90 0 * * * * * * 4293 0 0 Q 91 * * * * * * 2015 * 2746 * * * * 1943 1542 * * * * * 91 0 * * 0 * * * 2861 0 0 //