HHsearch 1.5 NAME c2k9xA_ FAM FILE c2k9xA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2k9xA_.a3m DATE Mon Mar 8 15:46:47 2010 LENG 102 match states, 102 columns in multiple alignment FILT 109 out of 178 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.7 EVD 0.4303 0.6565 SEQ >ss_dssp CCCSSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTCCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHTSSCCCCCSSCEEEEEECCC CC >sa_dssp EDEEECBCACBCEDACEABCEDEDCECEDEEBEEDDACCBADEAAEEECEDEDECABDEECDCBCEAAEBCBEEDDAEEEDBDECEBEBDBCACADCEEE EE >ss_pred CCCCCEEEEEECCHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCHHHHEECCCCCCCCCCEEEEECCEEEEECCCCCCCCCCCCEEEEECCCC CC >ss_conf 9887179999760288740875147998426888889999999998535301111001467754763799987845340376340725998999981257 89 >Consensus xxxxxxixVeFxGGLxxLfxxxkxxxlxlxvxxgxTVxdLlxxLxxxxxxxxxxlxxxxxxgxlrpxixVlvNxxdixxlxgxxtxLxdgDxixxxpxix GG >c2k9xA_ MSNHNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYVKERPDLLVDQTGQTLRPGILVLVNSCDAEVVGGMDYVLNDGDTVEFISTLH GG >UniRef50_B8GHP3(4-93:93) ThiamineS protein n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GHP3_METPE E=0.0002 s/c=0.52 id=24% cov=45% --------------------------IQLVVPEGTTITEAVQIVCRERNEAATALF--GEDGTFREYVILMQN--------------------------- -- >UniRef50_C5ZZS2(5-92:92) Molybdopterin converting factor, subunit 1 n=9 Tax=Thermococcaceae RepID=C5ZZS2_THESM E=5e-07 s/c=0.63 id=11% cov=34% ------------------------------LPKGSKIRDLIEHIKSIHPDFKREAFSEGYNDEV------------------------------------ -- >UniRef50_Q8TQ39(2-94:94) Predicted protein n=2 Tax=Methanosarcina RepID=Q8TQ39_METAC E=2e-10 s/c=0.72 id=23% cov=91% ------IHVKFLATIREITGKP---EIELEILPGDTVGTALQALQARYGPEFKEATTGTTAGGI-PKVRFLVNGRNTDFLDGFETELKAGDVMVFVPPVA GG >UniRef50_Q0SE28(5-96:96) Possible molybdopterin biosynthesis protein n=5 Tax=Actinomycetales RepID=Q0SE28_RHOSR E=3e-07 s/c=0.61 id=15% cov=91% ------VTVRVPRALASIVGGERSVHVPLD--AASTVSHVLDVLAGEFPILGRRI--RDETGALRRYVNVYVDGEDVRLLGGVGTEVTPGQELQILQSVA GG >UniRef50_C9RJS1(6-89:492) Thiazole biosynthesis adenylyltransferase ThiF n=3 Tax=Bacteria RepID=C9RJS1_FIBSS E=2e-06 s/c=0.64 id=19% cov=76% ------------------FGKNAQVSVPEN-----TVRKALANLISTYPEGEKVLFDENN--KLRSFIKIYLNGKNLNVDTLWDATLEDDSEILLLPAIA GG >UniRef50_C8S693(2-85:317) Methyltransferase type 11 n=2 Tax=Ferroglobus placidus DSM 10642 RepID=C8S693_FERPL E=2e-05 s/c=0.60 id=11% cov=44% -------RIKFFGEL----GMKVGKEIEIEVGREVAFDELIKILEEKFPQAKEEF--------------------------------------------- -- >UniRef50_C6A4Y0(11-94:96) Putative uncharacterized protein n=1 Tax=Thermococcus sibiricus MM 739 RepID=C6A4Y0_THESM E=0.0003 s/c=0.55 id=16% cov=30% ------------------YEKTKKHKEIIELDKNSiTVQELVKFLFEQY--------------------------------------------------- --- >UniRef50_Q5P0J8(685-774:774) Putative tungsten-containing aldehyde ferredoxin oxidoreductase (AOR-1) n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P0J8_AZOSE E=2e-08 s/c=0.67 id=19% cov=86% --------------AHTMTGFAVRVELPKPLPGAPDKDIVIDEPVSNVIALRDALrrrFPEAQEELGDHSWNVAVNGRMV-LSGERETALNDGDRVTLVP IIAGG # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 1029 * * 972 * * * * * * * * * 1 0 * * * * * * 1555 0 0 S 2 * * * * * * * * * * * * * * * 0 * * * * 2 0 * * * * * * 1555 0 0 N 3 * * * * * 1029 * * * * * 972 * * * * * * * * 3 0 * * * * * * 1555 0 0 H 4 * * * * * 1556 600 * * * * * * * * * * * * * 4 0 * * * * * * 2118 0 0 N 5 * * * * * * * * * * * 1633 * * * 1556 * 1567 * * 5 0 * * * * * * 2118 0 0 H 6 * * 2305 * * * 3377 * 2831 * * 1811 * 2443 * * 3443 * * * 6 0 * * * * * * 3462 0 0 I 7 * * * * * * * 1020 * 3451 * * * * * * * 1268 * * 7 0 * * * * * * 5673 0 0 T 8 * * * 3524 * * 4538 3962 1976 5193 * 5141 * * 3590 3563 1607 * * * 8 0 * * * * * * 6785 0 0 V 9 * * * * 4935 * * 2426 * 2971 * * * * * * 5231 673 * * 9 0 * * * * * * 7095 0 0 Q 10 5706 * 2890 1236 * * * * 1867 * * * * 4519 3271 * * * * * 10 0 * * * * * * 7095 0 0 F 11 * * * * 529 * * 5075 * 1993 * * * * * * * 5264 * * 11 74 6089 4823 0 * * * 7095 1000 0 A 12 3453 5569 * 5034 3640 3199 * * * 2176 * * 3456 * * 2125 4398 4312 * 5124 12 26 * 5792 * * * 0 7074 0 1414 G 13 2858 * * * * 457 * * * * * * * * 3711 4129 * * * * 13 0 * * * * * 0 7059 0 1783 G 14 4226 * * 5372 * 577 * * * 5116 * 5969 5548 * 5447 * 3517 4510 * 4983 14 0 * * * * 606 1543 7059 0 1783 C 15 2165 5430 * * * * * 5301 * 457 * * * * * * * * * * 15 29 * 5659 * * * 0 7160 0 1000 E 16 3725 * 2346 1542 * * 3788 * 4317 5850 * * * 4704 2614 * * 4546 * * 16 0 * * * * 1031 970 7035 0 1511 L 17 4577 * * 3936 5526 * 5162 4531 3509 2393 * 6186 5752 4477 5937 2535 2645 3718 * 5662 17 60 * 4627 * * * 0 7013 0 1000 L 18 4959 5557 5244 * 3902 * * 3274 * 778 4172 * * * * 4505 * 4850 * 4937 18 34 * 5409 * * * 0 7896 0 2242 F 19 3656 5501 * * 960 5683 * * 5232 4567 * * * * * * 2550 3968 * 4017 19 133 4880 4201 540 1678 950 1052 7937 1538 2728 A 20 3018 * 3004 4057 * 1718 * 4389 5395 * * 3761 * 5825 4274 3002 5071 * 5734 * 20 0 * * * * 343 2242 8039 0 3025 K 21 4878 * 3886 4365 5131 3365 * * 2144 * 4401 2266 * 5294 3513 3981 4262 * * 6143 21 17 * 6423 * * * 0 8166 0 1000 Q 22 2985 * 5245 3438 5327 * * 4070 3505 3943 * 5191 3930 2233 4367 * 4055 3479 * 6206 22 100 * 3907 * * 827 1197 8155 0 1560 T 23 3948 * 5447 5418 * 5326 5956 * 1256 * 6023 5290 4594 5945 2255 5637 4117 4530 * * 23 95 6790 4196 0 * * 0 8114 1000 2784 S 24 4038 * 5004 2238 * 3769 * 4873 2016 * 5493 4914 * 4798 3616 4106 3958 4446 * * 24 40 * 5183 * * * 0 7985 0 3455 L 25 6068 * 5916 4412 5830 * 2430 3598 4282 2317 5969 5580 5614 3707 4127 4680 4834 3077 * * 25 65 5117 6022 1697 532 1169 849 7894 1508 3663 Q 26 3905 * 4716 1697 5675 * 3891 5823 3160 5620 * * * 5250 5190 3751 2804 3993 * 5970 26 109 4229 5688 0 * 840 1180 8057 1787 2833 L 27 * * * 4977 4741 5595 5599 3290 * 1559 5187 * * * * * 3753 1784 * 4160 27 20 * 6208 * * 844 1175 8197 0 2467 D 28 5998 * 3621 1959 * * * 4714 4393 5157 6441 5127 3146 3898 5866 3051 3681 3643 5947 * 28 126 * 3580 * * 1775 499 8268 0 2128 G 29 5872 * * 3211 4291 6457 * 3899 3520 1388 4705 * * 6655 5373 5916 * 2544 * 5991 29 0 * * * * 2864 213 7387 0 3559 V 30 6104 * 2637 1932 3506 6088 * 5154 4432 4021 * 4417 3130 4712 * 5472 4838 3895 * * 30 117 5788 4067 593 1569 1664 547 7407 1547 3484 V 31 4849 * 5982 3990 4052 4860 * 2968 6054 2515 6190 3566 * 5213 * 6485 * 1768 5599 5415 31 101 4146 6505 1456 654 2327 321 8249 2307 3943 P 32 5306 5926 5546 2378 * 3391 * 6131 4362 3623 * * 1559 6177 5531 3161 5764 * * * 32 27 5756 * 0 * 2236 344 8280 1544 3733 T 33 3180 5365 3638 2076 * 3093 4995 * 3782 * * 3968 5057 4763 5107 3020 4857 6779 * * 33 27 5733 * 2563 267 609 1538 7439 1538 3237 G 34 4258 6114 4655 4003 * 1216 6688 5376 4733 * * 4334 2653 6308 * 3954 6099 5112 * * 34 13 6788 * 0 * 1507 626 7489 1000 1952 T 35 2267 * 4310 4472 5194 6256 6727 4028 4469 4922 5570 * 5413 6077 * 2037 3583 3516 4895 * 35 60 4620 * 2585 263 0 * 7521 3348 1602 N 36 6952 * 4083 * * * * * 3643 5413 * 3120 * * 6030 3893 663 * * * 36 0 * * * * * * 7499 0 0 L 37 * * * * 4639 6308 * 2644 5408 2543 3420 * * * * * * 1004 * * 37 0 * * * * * * 7499 0 0 N 38 3927 * 4645 3579 * 2137 5353 6509 3184 4990 * 4234 * 5091 2701 3516 4136 6303 * 6246 38 0 * * * * * * 7499 0 0 G 39 3863 * 1610 1956 6451 5580 5600 5408 6200 * 6458 4221 * 3972 4958 4782 4912 * 6507 6110 39 0 * * * * * * 7499 0 0 L 40 2953 * * * 5769 * * 4591 * 817 6284 * * * * * 6105 2210 * * 40 0 * * * * * * 7499 0 0 V 41 6775 * * * 6410 * * 1754 6259 1183 4248 * 6213 * 6529 * * 2715 * * 41 0 * * * * * * 7499 0 0 Q 42 3175 6336 2493 2731 4799 6128 5166 * 3133 4908 * 6002 * 3882 3204 3862 4624 5510 * * 42 0 * * * * * * 7499 0 0 L 43 3578 * 7370 3136 4683 4964 3497 4042 3826 3374 7115 5294 * 5440 4943 5459 5907 4305 3862 2623 43 20 * 6162 * * * * 7499 0 0 L 44 6138 * * * 6594 * * 3011 * 555 3951 * 5406 * * * * 3602 * * 44 33 * 5477 * * 0 * 7469 0 1000 K 45 2368 5572 4373 3336 4156 6085 6318 4146 3482 5270 6061 5694 * 5014 4083 3577 4561 3074 * 6203 45 12 * 6884 * * 1021 979 7466 0 1352 T 46 3671 * 4087 1820 * 3999 * 6532 3473 * * 4535 * 3318 3770 2960 4075 6451 * * 46 46 * 5005 * * 859 1156 7469 0 1624 N 47 * * 3391 3525 6691 * 4804 4181 2898 5272 * 2685 * 3127 2945 5422 3383 6443 * 5228 47 50 * 4875 * * * 0 7410 0 2484 Y 48 5101 5194 * * 3644 * 3569 3574 4819 3240 6454 5171 * * 6191 6295 6379 3421 5976 1445 48 48 7027 5312 0 * 1753 508 7376 1000 3403 V 49 5219 * 5760 4675 5933 3259 * 3382 4778 3397 4729 4607 1371 * 5468 * 6592 3856 * * 49 0 * * * * 1112 896 6760 0 3278 K 50 3770 * 3363 2760 * 2778 * 5097 3908 5527 * 4780 3161 3927 4316 4981 3770 4338 * * 50 14 * 6729 * * 1744 512 6792 0 2213 E 51 4829 * 3087 3186 5659 4215 6542 3069 4418 2214 * 5680 4339 6282 5429 5692 3735 4578 6381 5789 51 115 4439 5026 877 1134 * 0 6806 2726 2067 R 52 5023 * 4706 3024 3573 5512 5350 5791 2423 5234 6210 * 4118 4053 2072 4531 6788 6362 * 6277 52 40 * 5180 * * 2543 272 6774 0 2805 P 53 4023 * 3973 3508 * 4865 * 5879 2589 4113 * 5479 3513 4259 2883 2656 4181 * * * 53 34 * 5404 * * 1130 880 6738 0 3238 D 54 3726 * 2611 2457 * 4122 4491 * 3264 4245 6605 4369 6220 4074 3573 4280 6530 6007 6208 6261 54 0 * * * * * 0 6779 0 3074 L 55 4099 6407 * 4070 3815 6569 6724 3901 5110 1032 4339 6412 * * 5194 5557 5049 4504 6578 * 55 137 5503 3865 1585 585 * 0 6779 1000 3074 L 56 5422 * 4689 6116 1303 * * 3357 6261 2123 6663 6300 6951 * 5095 5644 5730 6600 6175 4182 56 341 4963 2485 5289 37 2719 238 6734 1466 3967 V 57 4459 * 3697 3658 3931 5988 * 3783 * 2106 5971 5162 4241 * 6014 4403 3797 2839 * 4618 57 128 * 3557 * * 3020 190 6673 0 4910 D 58 4646 5710 1978 2438 3144 4725 * 4463 4947 4229 7283 3532 * 4907 5371 * * 3832 * * 58 273 6025 2672 4644 59 1381 699 6668 1000 5362 Q 59 3122 * 2066 2632 6109 4503 6094 3885 6408 6051 5958 4313 4452 4552 6372 4099 4816 4473 * 6433 59 152 * 3325 * * 1453 656 6627 0 5308 T 60 4397 * 2620 2080 6106 4743 5137 * 3673 6495 * 3659 5026 3387 5162 5932 3336 6459 * 5416 60 96 * 3951 * * 1073 931 6566 0 5258 G 61 3150 * 1870 3015 * 2207 6127 6112 5054 6811 * 3659 * 6937 6681 4177 4229 * * * 61 17 * 6416 * * 811 1217 6594 0 4994 Q 62 6003 6185 3468 2617 * 986 5922 * 5518 * 6182 4532 5464 4835 * 4485 6083 * * * 62 88 4729 5544 4056 89 1178 842 6671 2066 3630 T 63 3087 * 5170 2405 * 4332 5302 * 2627 3845 * 4315 6521 5076 5034 4167 2756 5533 6304 * 63 35 5391 * 4782 53 1644 556 6707 1785 2919 L 64 4605 * 5614 6442 4905 5635 * 2738 5433 1321 5338 * 4693 * 6551 * * 2296 * 5469 64 42 * 5128 * * 2336 318 6708 0 2416 R 65 4156 * 5619 * * 5396 5557 4444 3021 4978 * 4075 * 5621 1035 5541 5342 5802 6855 4746 65 0 * * * * 948 1054 6695 0 2938 P 66 4263 * 3380 3456 * 5107 3950 * 5116 * * 6046 1121 * 3731 3899 6372 * 6840 * 66 32 6436 6559 2000 415 1142 871 6723 1000 1913 G 67 5850 * 4767 6827 3264 1527 4011 * 5907 7463 5811 3908 * 4753 5607 3475 7012 6305 * 2743 67 16 * 6538 * * 0 * 6732 0 2014 I 68 * * * * 4430 * 6522 1416 * 3777 7046 * * * * 6436 4168 1440 5659 4967 68 0 * * * * * 0 6732 0 1000 L 69 5383 * 6522 6582 * 6169 6703 2027 5410 2074 4572 2326 * * 3724 4963 5989 4671 * 5595 69 0 * * * * * 0 6732 0 1000 V 70 5157 5335 * * 5314 * * 1804 * 3552 * * * * * * 4745 962 * * 70 0 * * * * * 0 6732 0 1000 L 71 2926 7034 * * 3108 * * 5335 * 1030 3286 * * * * * 7066 5778 6522 3457 71 0 * * * * * 0 6732 0 1000 V 72 * * * * * * 4196 1802 4701 3056 * * * 6799 5628 * 6169 1130 * * 72 0 * * * * * 0 6732 0 1000 N 73 * * 3655 * * 4460 6056 * * * * 217 * * * * * * * * 73 12 * 6872 * * * 0 6732 0 1000 S 74 * * 1609 4196 * 1126 * * 4883 * * 5508 * 5343 4439 4930 * * * * 74 0 * * * * * 0 6644 0 1353 C 75 3550 5737 6804 3147 * * 5569 * 4068 * 4755 4116 * 3466 1858 6359 3277 3261 * 6312 75 40 * 5208 * * * 0 6644 0 1353 D 76 5251 * 985 6103 * * 4441 * * * 5571 2356 * 5718 3604 4341 6884 * * 4941 76 0 * * * * * 0 6666 0 2195 A 77 3588 * * * * * * 1433 * 5175 * * * * * 4132 4731 2389 2100 * 77 46 * 4981 * * 798 1235 6666 0 2195 E 78 5091 * 4032 1538 6550 6345 5498 * 4028 5624 6742 4732 5362 5112 2307 3584 4247 * * * 78 50 * 4871 * * 1666 546 6586 0 2299 V 79 3978 * * 5310 3354 5280 2753 3742 * 1988 6324 4855 5908 6091 4930 4926 6417 3503 5784 4308 79 77 6551 4606 0 * 2621 256 6600 1000 2524 V 80 5356 * 4872 3313 6365 * * 4979 * 739 4639 * 4806 * 5426 4167 6413 4993 * * 80 0 * * * * 1284 763 6640 0 2944 G 81 4857 * 2899 2072 * 1930 * * 5367 4998 * 3798 6249 3418 6097 4420 5985 * 5649 * 81 0 * * * * * 0 6598 0 2333 G 82 4309 * 4520 2888 5863 865 * * 2945 5985 6555 5907 * 6761 * * 5486 * * * 82 33 * 5484 * * 840 1180 6598 0 2333 M 83 * * 4950 2388 5818 6036 * 4573 5774 1729 3432 5678 4498 6112 5591 4730 5351 3840 5994 4561 83 0 * * * * 686 1402 6631 0 2621 D 84 3911 * 1747 2530 * 5480 6494 * 3436 * * 3785 5698 4660 4300 3159 4558 * * * 84 0 * * * * 1219 810 6652 0 1387 Y 85 3049 4817 * * * * * 6045 6594 5523 * * * 5102 6499 4521 875 4803 * 2925 85 0 * * * * * 0 6667 0 1000 V 86 3178 6488 5931 2607 * * * 4423 3396 4679 5741 6147 2049 5151 3883 6899 4900 3252 * * 86 0 * * * * 0 * 6667 0 1000 L 87 6518 * * * * * * 3100 * 624 * * * * * * * 2162 * * 87 0 * * * * * * 6667 0 0 N 88 3769 * 5251 3037 * 5253 4532 * 1893 * * 3847 6050 3247 3457 3421 3933 * * * 88 0 * * * * * * 6667 0 0 D 89 4291 * 1274 2294 * 5045 4585 * 5158 * * 3691 3322 6782 * 4979 6246 * * * 89 0 * * * * * * 6667 0 0 G 90 5462 * 3840 6455 * 650 6304 * 5646 * 6394 3061 * 6069 5284 4441 7000 * * * 90 0 * * * * * * 6667 0 0 D 91 5519 6388 208 * * * 6543 * 6073 * * * * 5607 * 4453 * 6829 * * 91 0 * * * * * * 6635 0 0 T 92 5653 6061 * 1435 * * 4367 5700 4116 3826 6772 4525 * 6687 3894 * 3237 2754 * 6014 92 0 * * * * * * 6635 0 0 V 93 * * * * * * * 1392 * 2549 6027 * * * * * * 1209 * * 93 0 * * * * * * 6088 0 0 E 94 2289 6305 6653 6743 7143 * 6649 3686 * 3240 * * * 5445 7294 2412 2388 2763 * 7108 94 0 * * * * * * 6065 0 0 F 95 * * * * 1492 * * 1743 * 1893 * * * * * * * 3712 * * 95 0 * * * * * * 6051 0 0 I 96 6146 * * * 2519 * * 1849 * 1996 4239 * * * * * 4251 2590 * 6444 96 0 * * * * * * 6047 0 0 S 97 4997 * * * * * * * * * 5566 * 784 5401 * 1609 6019 * * * 97 0 * * * * * * 6046 0 0 T 98 2492 * * * * * * 4704 * 5070 6100 * 1531 * * 4126 2020 4530 6103 4973 98 0 * * * * * * 6046 0 0 L 99 4871 * * * * * * 1702 * 1965 4237 * * * * * * 1517 * * 99 0 * * * * * * 6046 0 0 H 100 1351 * 6436 * * 6283 1442 * * * * * * * * 2420 5498 * * 7280 100 0 * * * * * * 6046 0 0 G 101 * * * * * 32 * * * * * * 5495 * * * * * * * 101 0 * * * * * * 6046 0 0 G 102 * * * * * 0 * * * * * * * * * * * * * * 102 0 * * 0 * * * 6046 0 0 //