HHsearch 1.5 NAME c2k8fB_ FAM FILE c2k8fB_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2k8fB_.a3m DATE Wed Mar 10 19:15:58 2010 LENG 39 match states, 39 columns in multiple alignment FILT 2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.2 EVD 0.5173 4.2389 SEQ >ss_dssp CCSSCCCSSCCCCCSCHHHHHHHHTCSSSCCCCCCCSCC >sa_dssp EEEEEDEEEEDEEEEEDEECDEDDEDEEEEEEDEEEEEE >ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCCCCC >ss_conf 986322754568763356999996468343114352469 >Consensus mexxqsdxsiexplsqetfsxlwkllpxxxilsplpsqa >c2k8fB_ MEEPQSDPSVEPPLSQETFSDLWKLLPENNVLSPLPSQA >UniRef50_Q9EPP9(1-32:170) Mutant p53 n=4 Tax=Rattus norvegicus RepID=Q9EPP9_RAT E=0.0006 s/c=1.42 id=67% cov=85% MEDSQSDMSIELPLSQETFSCLWKLLPPDDIL------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1242 0 0 E 2 * * * 0 * * * * * * * * * * * * * * * * 2 0 * * * * * * 1242 0 0 E 3 * * 1000 1000 * * * * * * * * * * * * * * * * 3 0 * * * * * * 1242 0 0 P 4 * * * * * * * * * * * * 1000 * * 1000 * * * * 4 0 * * * * * * 1242 0 0 Q 5 * * * * * * * * * * * * * 0 * * * * * * 5 0 * * * * * * 1242 0 0 S 6 * * * * * * * * * * * * * * * 0 * * * * 6 0 * * * * * * 1242 0 0 D 7 * * 0 * * * * * * * * * * * * * * * * * 7 0 * * * * * * 1242 0 0 P 8 * * * * * * * * * * 1000 * 1000 * * * * * * * 8 0 * * * * * * 1242 0 0 S 9 * * * * * * * * * * * * * * * 0 * * * * 9 0 * * * * * * 1242 0 0 V 10 * * * * * * * 1000 * * * * * * * * * 1000 * * 10 0 * * * * * * 1242 0 0 E 11 * * * 0 * * * * * * * * * * * * * * * * 11 0 * * * * * * 1242 0 0 P 12 * * * * * * * * * 1000 * * 1000 * * * * * * * 12 0 * * * * * * 1242 0 0 P 13 * * * * * * * * * * * * 0 * * * * * * * 13 0 * * * * * * 1242 0 0 L 14 * * * * * * * * * 0 * * * * * * * * * * 14 0 * * * * * * 1242 0 0 S 15 * * * * * * * * * * * * * * * 0 * * * * 15 0 * * * * * * 1242 0 0 Q 16 * * * * * * * * * * * * * 0 * * * * * * 16 0 * * * * * * 1242 0 0 E 17 * * * 0 * * * * * * * * * * * * * * * * 17 0 * * * * * * 1242 0 0 T 18 * * * * * * * * * * * * * * * * 0 * * * 18 0 * * * * * * 1242 0 0 F 19 * * * * 0 * * * * * * * * * * * * * * * 19 0 * * * * * * 1242 0 0 S 20 * * * * * * * * * * * * * * * 0 * * * * 20 0 * * * * * * 1242 0 0 D 21 * 1000 1000 * * * * * * * * * * * * * * * * * 21 0 * * * * * * 1242 0 0 L 22 * * * * * * * * * 0 * * * * * * * * * * 22 0 * * * * * * 1242 0 0 W 23 * * * * * * * * * * * * * * * * * * 0 * 23 0 * * * * * * 1242 0 0 K 24 * * * * * * * * 0 * * * * * * * * * * * 24 0 * * * * * * 1242 0 0 L 25 * * * * * * * * * 0 * * * * * * * * * * 25 0 * * * * * * 1242 0 0 L 26 * * * * * * * * * 0 * * * * * * * * * * 26 0 * * * * * * 1242 0 0 P 27 * * * * * * * * * * * * 0 * * * * * * * 27 0 * * * * * * 1242 0 0 E 28 * * * 1000 * * * * * * * * 1000 * * * * * * * 28 0 * * * * * * 1242 0 0 N 29 * * 1000 * * * * * * * * 1000 * * * * * * * * 29 0 * * * * * * 1242 0 0 N 30 * * 1000 * * * * * * * * 1000 * * * * * * * * 30 0 * * * * * * 1242 0 0 V 31 * * * * * * * 1000 * * * * * * * * * 1000 * * 31 0 * * * * * * 1242 0 0 L 32 * * * * * * * * * 0 * * * * * * * * * * 32 0 * * * * * * 1242 0 0 S 33 * * * * * * * * * * * * * * * 0 * * * * 33 0 * * * * * * 1000 0 0 P 34 * * * * * * * * * * * * 0 * * * * * * * 34 0 * * * * * * 1000 0 0 L 35 * * * * * * * * * 0 * * * * * * * * * * 35 0 * * * * * * 1000 0 0 P 36 * * * * * * * * * * * * 0 * * * * * * * 36 0 * * * * * * 1000 0 0 S 37 * * * * * * * * * * * * * * * 0 * * * * 37 0 * * * * * * 1000 0 0 Q 38 * * * * * * * * * * * * * 0 * * * * * * 38 0 * * * * * * 1000 0 0 A 39 0 * * * * * * * * * * * * * * * * * * * 39 0 * * 0 * * * 1000 0 0 //