HHsearch 1.5 NAME c2k85A_ FAM FILE c2k85A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2k85A_.a3m DATE Sat Aug 28 19:55:51 2010 LENG 65 match states, 65 columns in multiple alignment FILT 10 out of 14 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.1 EVD 0.4401 0.9066 SEQ >ss_dssp CTTTTHHHHHHHHHHHHHCSSSCSCHHHHHHHHTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHHC >sa_dssp EEDEDEBCEDACDAACDCAEECEDEBEDABEEAEEAECBDDACEDDCDEDACEBBDEBBDDDDEE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 92489899999999999843379998899999843888999999884688999999999998329 >Consensus xxxixtatdxxexLirxxVtdyxxxWtsxsKkLxxxxefxxxvxLxGxxaakxxFxrHixkLrxE >c2k85A_ SQQIATAKDKYEWLVSRIVKNHNENWLSVSRKMQASPEYQDYVYLEGTQKAKKLFLQHIHRLKHE >UniRef50_UPI000186D8BF(272-331:1575) Rho-GTPase-activating protein, putative n=2 Tax=Neoptera RepID=UPI000186D8BF E=6e-05 s/c=0.81 id=30% cov=94% -----SVTQTFQMLIRSQVTDFTVMWTHTLKKLSQHPEFSHYVALFGVDSAQRLFRRHIKKLKEE >UniRef50_B7P4I4(289-348:1582) Putative uncharacterized protein n=1 Tax=Ixodes scapularis RepID=B7P4I4_IXOSC E=5e-17 s/c=1.48 id=33% cov=92% ------ATDAFQALVRAQVTDHRAVWASSSKRLCQSPEFERFCGLFGRAAARTAFEKHVRRLREE >UniRef50_Q13017(267-329:1502) Rho GTPase-activating protein 5 n=37 Tax=Eukaryota RepID=RHG05_HUMAN E=7e-17 s/c=1.40 id=44% cov=98% -QLVVTATDKFEKLV-QTVRDYHATWKTVSNKLKNHPDYEEYINLEGTRKARNTFSKHIEQLKQE >UniRef50_UPI0000DB6C5F(233-296:1551) PREDICTED: similar to RhoGAPp190 CG32555-PA, isoform A n=1 Tax=Apis mellifera RepID=UPI0000DB6C5F E=1e-16 s/c=1.37 id=27% cov=92% ------STESLQRLIRIHVTDYRALWSQASKKLAQHKEFSTFVELFGIDATQRLFRRHIKKLKDE >UniRef50_B0WSB7(261-325:1577) Rho GTPase-activating protein 5 n=3 Tax=Culicidae RepID=B0WSB7_CULQU E=2e-15 s/c=1.29 id=26% cov=82% -------------LIRTQITDHRSIWTSSSKKLANHKEWNDFLELFGQEAGQRIFRRHIKKLRED >UniRef50_UPI0000E4A015(259-321:372) PREDICTED: hypothetical protein n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4A015 E=5e-15 s/c=1.30 id=32% cov=95% ---ITKAVDEYEQMLKKEVVNYHDLWTSRKKQYQNRDVFRKVVELIGTKNAKNYFTRHTQRLRQ- >UniRef50_UPI000180B36F(269-332:1100) PREDICTED: similar to LOC495117 protein, partial n=1 Tax=Ciona intestinalis RepID=UPI000180B36F E=1e-14 s/c=1.26 id=35% cov=92% ------AKKKLETLLAHTVVKYDESWTTARKTLENELDYQRFVDLEGKNAASKIFRKHVNRLRDE >UniRef50_Q9VX32(261-324:1561) Rho GTPase-activating protein 190 n=13 Tax=Drosophila RepID=RG190_DROME E=2e-11 s/c=1.09 id=18% cov=94% -----TRSEAVTRLIRNQITDYHVLWSQGSKMLSQYREWNEFLNIFGHEAGQKLFRRHMKKLRDD >UniRef50_A7RUA5(268-331:1716) Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RUA5_NEMVE E=2e-13 s/c=1.20 id=27% cov=86% ----------YQALINRTVTDFRCLWKNLKKVLELEKEFTVYKELNGSDACKRVFSKHIRKLRRE # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1000 0 0 Q 2 * * * * * * * * * * * * * 0 * * * * * * 2 0 * * * * * * 1461 0 0 Q 3 * * * * * * * * * 1023 * * * 978 * * * * * * 3 0 * * * * * * 1461 0 0 I 4 * * * * * * * 564 * * * * * * * * * 1627 * * 4 0 * * * * * * 1959 0 0 A 5 1645 * * * * * * * * * * * * * * * 1488 1627 * * 5 0 * * * * * * 1959 0 0 T 6 * * * * * * * * 2200 * * * * * * 2391 757 * * * 6 0 * * * * * * 2715 0 0 A 7 636 * * * * * * * * * * * * * 2846 3289 * 3118 * * 7 0 * * * * * * 3117 0 0 K 8 * * * * * * * * 1939 * * * * * * 2846 1167 2692 * * 8 0 * * * * * * 3117 0 0 D 9 * * 956 2050 * * * * 2964 * * * * 3118 * * * * * * 9 0 * * * * * * 3117 0 0 K 10 1990 * * 2692 * * * * 1411 * * * * * * 3289 3118 * * * 10 0 * * * * * * 3117 0 0 Y 11 * * * * 1723 * * * * 2335 * * * * * * * 3007 * 1417 11 0 * * * * * * 3232 0 0 E 12 * * * 1037 * * * * * * * * * 1365 * * 3007 * * * 12 0 * * * * * * 3232 0 0 W 13 2247 * * * * * * * 3231 * 3400 * * 2830 2269 * 3118 * 3001 * 13 0 * * * * * * 3232 0 0 L 14 * * * * * * * * * 207 2901 * * * * * * * * * 14 0 * * * * * * 3199 0 0 V 15 * * * * * * * 1171 * 2045 * * * * * * * 1673 * * 15 156 * 3290 * * * * 3199 0 0 S 16 3008 * * * * * * * 2729 * * 3107 * * 1092 2841 * * * * 16 0 * * * * 0 * 3096 0 1000 R 17 3429 * * * * * 3205 3763 2901 * * 3237 * 3290 2178 3527 3733 * * * 17 0 * * * * * * 3199 0 0 I 18 * * * 2901 * * 3763 3077 * * * * * 1470 * * 1675 * * * 18 0 * * * * * * 3199 0 0 V 19 * * * * * * * 2464 * * * * * * * * * 289 * * 19 0 * * * * * * 3199 0 0 K 20 * * * * * * * * 3077 * * * * * 3290 * 897 2045 * * 20 0 * * * * * * 3199 0 0 N 21 * * 646 * * * * * 3205 * * 1986 * * * * * * * * 21 0 * * * * * * 3199 0 0 H 22 * * * * 2403 * 1803 * * * * * * * * * * * * 931 22 0 * * * * * * 3199 0 0 N 23 * * 3205 * * * 1547 * * * * 3077 * * 1539 * 3527 * * * 23 0 * * * * * * 3199 0 0 E 24 1896 3288 2901 2140 * * * * * * * * * * * 3733 * 2375 * * 24 0 * * * * * * 3199 0 0 N 25 * * * * * * * 3733 * 1265 3527 3077 * * * 3205 3290 3429 * * 25 0 * * * * * * 3199 0 0 W 26 * * * * * * * * * * * * * * * * * * 0 * 26 0 * * * * * * 3199 0 0 L 27 3429 * * * * * * * 2289 3077 * * * * * 2476 1307 * * * 27 0 * * * * * * 3199 0 0 S 28 * * * * * * 3527 * * * * 3288 * 2476 * 1250 2247 * * * 28 0 * * * * * * 3199 0 0 V 29 2457 * * * * 3237 * * * 3288 * * * * 2901 2573 3527 2179 * * 29 0 * * * * * * 3199 0 0 S 30 * * * * * * * * 2081 3527 * * * * 3205 815 * * * * 30 0 * * * * * * 3199 0 0 R 31 * * * * * * * * 360 * * 3290 * * 3077 * * * * * 31 0 * * * * * * 3199 0 0 K 32 * * * * * * * * 1132 * 3237 * * 2901 3429 * 3205 3288 * * 32 0 * * * * * * 3199 0 0 M 33 * * * * * * * * * 420 3077 * * * * * * * * 2901 33 0 * * * * * * 3199 0 0 Q 34 2748 3429 * 2246 * * * * 3290 * * * * 1986 * 2375 * * * * 34 0 * * * * * * 3199 0 0 A 35 3077 * * * * * * * * 3288 * 1252 * 1477 * * * * * * 35 0 * * * * * * 3199 0 0 S 36 * * * 2246 * * 1566 * * * * * * * 2901 2242 * * * 3237 36 0 * * * * * * 3199 0 0 P 37 * * 2901 * * * * * 1993 3205 * * 1321 * 3237 * * * * * 37 0 * * * * * * 3199 0 0 E 38 * * 2247 610 * * * * * * * * * * * * * 2901 * * 38 0 * * * * * * 3199 0 0 Y 39 * * * * 1031 * * * * * * * * * * * * * 2464 1603 39 0 * * * * * * 3199 0 0 Q 40 * * * 2358 * * * * * * * 2464 * 2140 2901 2641 3288 * * * 40 0 * * * * * * 3199 0 0 D 41 * * 2368 2263 * * 3527 * 2901 * * * * * 2313 * 3763 3288 * * 41 0 * * * * * * 3199 0 0 Y 42 * * * * 1132 * * * * * * * * * * * * 2901 * 1287 42 0 * * * * * * 3199 0 0 V 43 * 3429 * * * * * 3290 3288 2464 * * * * * * * 940 * * 43 0 * * * * * * 3199 0 0 Y 44 3527 * 3205 1377 * 3429 * * * * * 2263 * * * * * * * 3077 44 0 * * * * * * 3199 0 0 L 45 * * * * * * * 3237 * 162 * * * * * * * * * * 45 0 * * * * * * 3199 0 0 E 46 * * * 1603 1203 * * 2901 * * * 3288 * * * * * * * * 46 0 * * * * * * 3199 0 0 G 47 * * * * * 0 * * * * * * * * * * * * * * 47 0 * * * * * * 3199 0 0 T 48 * * * * * * 3237 3763 3205 * * * * 3733 3429 3288 1496 3527 * * 48 0 * * * * * * 3199 0 0 Q 49 3429 * 1928 2464 * * * * 2901 * * 3205 * 3077 3290 * * * * * 49 0 * * * * * * 3199 0 0 K 50 840 * * * * * * * 2179 * * 2901 * * * 3527 * * * * 50 0 * * * * * * 3199 0 0 A 51 638 3288 * * * 2464 * * * * * * * * * * 3763 * * * 51 0 * * * * * * 3199 0 0 K 52 * * * * * * * * 1495 * * * * 1549 2358 3205 * * * * 52 0 * * * * * * 3199 0 0 K 53 * * * * * * * * 1586 * * 2082 * * 1565 * 3429 * * * 53 0 * * * * * * 3199 0 0 L 54 3429 * * * * * * 2445 * 1377 * * * * * * 3290 3288 * 2901 54 0 * * * * * * 3199 0 0 F 55 * * * * 0 * * * * * * * * * * * * * * * 55 0 * * * * * * 3199 0 0 L 56 * * * 3429 * * * * * 3077 * * * * 1152 2289 2901 * * * 56 0 * * * * * * 3199 0 0 Q 57 * * * * * * * * 1301 * * * * 3077 1072 * * * * * 57 0 * * * * * * 3199 0 0 H 58 * * * * * * 0 * * * * * * * * * * * * * 58 0 * * * * * * 3199 0 0 I 59 * * * * * * * 840 * * 3237 * * * * * 2901 2313 * * 59 0 * * * * * * 3199 0 0 H 60 * * * 3290 * * 3077 * 1549 * * 3205 * 2901 2357 * * * * * 60 0 * * * * * * 3199 0 0 R 61 * * * * * * * * 1171 * * * * 3290 1140 * * * * * 61 0 * * * * * * 3199 0 0 L 62 * * * * * * * * * 0 * * * * * * * * * * 62 0 * * * * * * 3199 0 0 K 63 * * * * * * * * 1392 * * * * * 692 * * * * * 63 0 * * * * * * 3199 0 0 H 64 * * 1795 1973 * * 3077 * * * * * * 2082 3288 * * * * * 64 0 * * * * * * 3199 0 0 E 65 * * 2303 327 * * * * * * * * * * * * * * * * 65 0 * * 0 * * * 2904 0 0 //