HHsearch 1.5 NAME c2k6xA_ FAM FILE c2k6xA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2k6xA_.a3m DATE Wed Mar 10 06:18:44 2010 LENG 72 match states, 72 columns in multiple alignment FILT 45 out of 49 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.7 EVD 0.3960 0.1933 SEQ >ss_dssp CCCCHHHHHHHHHHHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCCCCBCCSCCSCSSSCC >sa_dssp EEEDDDBDEAACDBBCCADEDDEDBCDBBEDAEECDDDCECEEADDDACCBDEEEDBEBEDEEEEEDEEEEE >ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHCC >ss_conf 976799999999999999872860199999846530111799999999999997697522578106665359 >Consensus xxxxxxxxxxvkxLIxxGKekGylTydeIndxLPxdxexvxxexIExixxxLxdmGIxVvdxxpexexlxxg >c2k6xA_ GSHMPQIERRIKKLISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGINIVENEPEEEEISAG >UniRef50_B2UM02(155-211:688) RNA polymerase sigma factor n=7 Tax=Verrucomicrobia RepID=B2UM02_AKKM8 E=7e-06 s/c=0.91 id=34% cov=78% ----PEIQEKIRELIKLAKEQGYLTFDDINDSLPNDI--VDQQDYEAIMDRLRSMAFDIID----------- >UniRef50_Q83BB6(89-156:698) RNA polymerase sigma factor rpoD n=106 Tax=Proteobacteria RepID=RPOD_COXBU E=0.0005 s/c=0.67 id=31% cov=76% -------------LLEEAKNKGYLVHEDLINLLPNDY--ADPSQMEGIIGRLTEMGIKVFEIPPDADSL--- >UniRef50_Q0EWY1(12-65:660) RNA polymerase sigma factor n=2 Tax=Bacteria RepID=Q0EWY1_9PROT E=6e-08 s/c=1.08 id=28% cov=75% --------RELGSLMAKGKQAGFITYDDLNKHLPGGL--VSADRVEQLINVFTEMGVEVVDPE--------- >UniRef50_D1ASA0(36-100:649) RNA polymerase sigma factor n=9 Tax=Anaplasmataceae RepID=D1ASA0_ANACI E=9e-07 s/c=0.84 id=34% cov=85% ----------VKNLITKGiKQGGVITFDDISDALSDD-DVVSSESIDETISLLQDSGIGVLEQSDEEEADAA- >UniRef50_B8GCU9(18-78:398) RNA polymerase sigma factor n=5 Tax=Bacteria RepID=B8GCU9_CHLAD E=0.0002 s/c=0.76 id=30% cov=74% ----------VQALIAQGRQQGFVTFEDIQRLVPNLEESV--EQIDSIYAALAEAGVPVHDgDEP-------- >UniRef50_UPI0001699122(2-69:309) RNA polymerase, sigma 70 subunit, RpoD n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699122 E=5e-15 s/c=1.21 id=28% cov=90% --NQEQQRSQLKQLIAKGKEQGFLTYAEVNDHLPEGI--VEPEQIEDIVRMINDMGITVHETAPDLED---- >UniRef50_B2KBW8(6-59:571) RNA polymerase sigma factor n=2 Tax=Elusimicrobia RepID=B2KBW8_ELUMP E=4e-07 s/c=1.03 id=24% cov=76% -------NKAFKDLVEVGKENGFLTLDEINRSLTSS--SMSAEDIDGLMGTLEDLGIQVVDRK--------- >UniRef50_Q3AEW8(6-67:370) RNA polymerase sigma factor n=9 Tax=Clostridia RepID=Q3AEW8_CARHZ E=2e-05 s/c=0.81 id=27% cov=82% -------NEKLMEIVEKGKKRGVLTYNDLLDSLQN--VDINSEQIDELYEYLANQGIEVVPEIPELE----- >UniRef50_B2V7P9(6-71:590) RNA polymerase sigma factor n=20 Tax=Bacteria RepID=B2V7P9_SULSY E=2e-06 s/c=0.81 id=35% cov=83% ----------VRTLINLAREKGYVTYAEISTYVEEEFFSSD-ENIESLIEYLNELNIDVRDDEkikSEDEDIS-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 S 2 * * * * * * * * * * * * * * * 0 * * * * 2 0 * * * * * * 1899 0 0 H 3 * * * * * * 1812 * * * * 1126 * * * 1960 * * * * 3 0 * * * * * * 2143 0 0 M 4 * * * 2199 * * * * * * 731 * * 2476 * * * * * * 4 0 * * * * * * 2329 0 0 P 5 1688 * * 1704 * * * * * * * * 1386 * * * * * * * 5 0 * * * * * * 2407 0 0 Q 6 * * * 1386 * * * * 1847 * * * * 1559 * * * * * * 6 0 * * * * * * 2521 0 0 I 7 * * 3197 * * * * 1741 * * * * * 3148 2909 2979 * 3393 * 3014 7 0 * * * * * * 2583 0 0 E 8 * * 4318 1812 * * * * * * * 2332 * 2139 2302 * 4772 * * * 8 0 * * * * * * 3497 0 0 R 9 2763 * * 2053 * 4444 * * 2076 * 4385 * * 4847 2526 3790 * * * * 9 0 * * * * * * 3596 0 0 R 10 2867 * 4554 2114 * * * * 2297 * * * * 2614 2599 4669 5784 * * * 10 38 5266 * 1000 1000 * * 3695 1000 0 I 11 * * * * 4186 * * 2187 * 1695 4503 * * * * * * 1425 * * 11 0 * * * * * * 4005 0 0 K 12 5340 * * 4382 * 4941 * * 782 * 5131 * * 2933 2703 * * * * * 12 24 5911 * 1000 1000 * * 4000 1000 0 K 13 2357 * 3237 2619 * * * * 2019 * * 4294 * 3616 4602 4189 4045 * * * 13 0 * * * * * * 4032 0 0 L 14 4938 * * * 4992 * * 3254 * 392 3859 * * * * * * * * * 14 0 * * * * * * 4092 0 0 I 15 * * * * * * * 700 * 3622 3546 * * * * * * 2200 * * 15 0 * * * * * * 4092 0 0 S 16 1895 * 5317 3116 * 4196 * * 2836 5906 * 4059 * 3800 5241 3348 3431 5045 * * 16 0 * * * * * * 4092 0 0 L 17 3734 * 5045 4104 * * * * 1986 1238 5520 * * 4433 4171 * 6754 5193 * * 17 0 * * * * * * 4092 0 0 G 18 2084 * * * * 487 * * * * * * * * * 4298 * * * * 18 70 4408 * 0 * * * 4092 1277 0 K 19 * * * * * * * * 384 5774 * 5162 * * 2882 5289 * 5254 * * 19 0 * * * * * * 4097 0 0 K 20 3942 * * 1178 * * * * 1980 * * 4761 * 3633 4936 4540 4431 * * * 20 0 * * * * * * 4097 0 0 K 21 5037 * * * * 4164 * * 1777 * * 4065 * 2137 1578 * * * * * 21 0 * * * * * * 4097 0 0 G 22 * * * * * 0 * * * * * * * * * * * * * * 22 0 * * * * * * 4097 0 0 Y 23 * * * 4877 1528 * * * 5447 * * * * * * 5184 * 3945 * 989 23 0 * * * * * * 4097 0 0 I 24 * * * * * * * 2327 * 834 * * * * * * * 2059 * * 24 0 * * * * * * 4097 0 0 T 25 * * * * * * * * * * * * * * * 4877 106 4761 * * 25 0 * * * * * * 4097 0 0 Y 26 * * * * 2327 * 2830 5512 * 5281 4913 * * * 5035 * * 5622 * 920 26 0 * * * * * * 4097 0 0 E 27 2208 * 1261 2320 * 4485 * * * * * 4342 * 5672 5184 * 5319 * * * 27 0 * * * * * * 4097 0 0 D 28 * * 1324 928 * * * * * * * * * 3739 * * * * * * 28 0 * * * * * * 4097 0 0 I 29 * * * * * * * 912 * 1842 * * * * * * * 2398 * * 29 0 * * * * * * 4097 0 0 D 30 * * 4470 * * * * 4761 * 4191 4407 655 * 5103 * 3300 * 4304 * * 30 0 * * * * * * 4097 0 0 K 31 4815 * 1000 2702 * * * * 3230 * * 3948 * 4936 4189 5961 4804 * * * 31 0 * * * * * * 4097 0 0 A 32 2101 * * * * * 2357 4447 4848 3015 5622 5516 * 5523 * 3184 5184 3290 * 3972 32 0 * * * * * * 4097 0 0 F 33 * * * * 3810 * * 5318 * 350 4210 * * * * * * 3946 * * 33 0 * * * * * * 4097 0 0 P 34 * * * 4804 * * * * * * * * 349 3808 * 3609 5281 * * * 34 0 * * * * * * 4097 0 0 P 35 3681 * 1741 3120 * 2909 * * * * 6402 2831 3235 5622 * 3385 * * * * 35 536 5254 1816 0 * * * 4097 1000 0 D 36 * 4989 912 3862 * 3435 * * 3862 4648 * 4384 * * * 3068 * * * * 36 270 * 2551 * * * 0 3866 0 3183 F 37 * * * 4382 1910 * * 1938 * 3246 3305 * * * * * * 2586 * 4269 37 856 * 1160 * * 348 2222 3801 0 3342 E 38 3031 * 4329 1182 4238 * * 4633 * * * * * 4529 * 4459 2849 3913 * * 38 180 * 3093 * * 1999 416 3920 0 3202 G 39 * * 3081 1789 * 4865 * * * * * 3437 * 2960 * 2427 3614 4876 * 4810 39 180 * 3091 * * 339 2257 3871 0 3203 F 40 3763 * 5090 * 3678 * * 3477 * 2810 3655 * * * * 4599 5263 1272 * 5285 40 47 * 4956 * * 538 1683 4029 0 2547 D 41 5319 * 1631 4226 * * * * * * * 2619 * * * 1528 3490 * * * 41 61 * 4602 * * 673 1424 4062 0 1919 T 42 2196 5148 * * * 4595 * * * * * * 1776 3959 * 1906 3488 * * * 42 118 * 3665 * * 0 * 3971 0 1540 N 43 * * 2042 829 * * * * 3859 * * 4329 * 4805 * 4656 * * * * 43 0 * * * * * 0 4040 0 1866 L 44 3893 * 2798 4193 4640 * * * 3333 3777 * 4654 * 1388 4894 4510 5467 * * * 44 0 * * * * 0 * 4040 0 1866 I 45 * * * * * * * 550 * 3136 3833 * * * * * * 3880 * 3940 45 0 * * * * * * 4091 0 0 E 46 * * 1304 749 * * * * * * * * * * * * * * * * 46 0 * * * * * * 4091 0 0 R 47 3891 * 1412 2696 * 3257 * * * * * 4187 * 5024 4444 3557 4754 4491 * * 47 0 * * * * * * 4091 0 0 I 48 4406 * * * 4834 * * 1283 * 2230 * * * * * * 3562 2399 5691 * 48 0 * * * * * * 4091 0 0 H 49 * * * 5016 4834 * 4444 1818 * 3198 2002 * * * 5272 * * 3079 * 3297 49 0 * * * * * * 4091 0 0 E 50 2580 * 4069 2695 * 3123 * * 5308 * 5498 5024 * 3778 5895 2015 4047 5138 * * 50 0 * * * * * * 4091 0 0 E 51 2346 * * 4444 * * * 4123 5242 2925 2442 * * 3946 3804 * 3259 4158 * 4040 51 0 * * * * * * 4091 0 0 L 52 * * * * 3149 * * 3239 * 356 * * * * * * * * * * 52 0 * * * * * * 4091 0 0 E 53 3292 * 4876 2973 * 3150 4834 5016 * * * 2278 * 3571 4867 2809 3466 * * * 53 0 * * * * * * 4091 0 0 K 54 * * 1227 1824 * 5750 5138 * 4444 * * 3509 * 5498 5168 4867 5298 * * * 54 0 * * * * * * 4091 0 0 H 55 3494 * * 4252 * * 4444 4578 * 2997 1173 5627 * 4320 * 3572 * 4390 * * 55 0 * * * * * * 4091 0 0 G 56 4867 * 5627 5239 * 216 * * 5498 * * 4790 * * * * * * * * 56 0 * * * * * * 4091 0 0 I 57 * * * * 4867 * * 346 * * * * * * * * * 2481 * * 57 0 * * * * * * 4091 0 0 N 58 3376 * 2103 2441 * 4356 * * 3697 * * 2187 5086 5235 4556 * 4550 * * * 58 0 * * * * * * 4091 0 0 I 59 * * * * * * * 1710 * 3534 * * * * * * * 718 * * 59 0 * * * * * * 4043 0 0 V 60 * * * * 4021 * 3922 2615 * 2597 * * * * 4009 * * 1408 * 3253 60 0 * * * * * * 4043 0 0 E 61 * * 1111 1133 * * * * * * * * 3621 * * * * * * * 61 50 4886 * 0 * * * 4119 1000 0 N 62 5269 * 2847 2676 5131 5157 * 4473 5037 * * 5166 3933 2836 3837 2463 4643 5522 * * 62 36 5362 * 2807 222 * * 4130 1000 0 E 63 1996 * 3119 2161 * * * 4846 3913 * * 5152 3547 5128 * 3292 3943 * * * 63 75 4294 * 1585 585 * * 4052 1000 0 P 64 * * 4965 3002 * 4646 * * * * * * 791 4570 5040 3641 4819 4741 * * 64 0 * * * * * * 3867 0 0 E 65 4841 * 1610 1319 * 4728 * * 4674 * * * * * * 4921 4589 3551 * * 65 0 * * * * * * 3850 0 0 E 66 2032 * 2890 1625 * 4552 * * 4553 3006 * * * * * 4591 * 4472 * * 66 0 * * * * * * 3807 0 0 E 67 * * 1491 634 * * * * * * * * * * * * * * * * 67 0 * * * * * * 3649 0 0 E 68 2652 * 1952 2394 * * * * * * * 4100 * * * 2863 2692 4581 * * 68 0 * * * * * * 3497 0 0 I 69 * * 2895 * * * * 1892 * 899 4067 * * * * * * * * * 69 0 * * * * * * 3345 0 0 S 70 2377 * * * * * * * * 2308 * * * * * 724 * * * * 70 0 * * * * * * 2562 0 0 A 71 988 * * * * * * * * 1945 * * * * * 2082 * * * * 71 0 * * * * * * 2331 0 0 G 72 * * * * * 0 * * * * * * * * * * * * * * 72 0 * * 0 * * * 1999 0 0 //