HHsearch 1.5 NAME c2k5cA_ FAM FILE c2k5cA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2k5cA_.a3m DATE Wed Mar 10 08:47:04 2010 LENG 88 match states, 88 columns in multiple alignment FILT 2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.3 EVD 0.3769 -1.3708 SEQ >ss_dssp CEECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHSEEECTTTCCEEETTSSCTTTHHHHHHHHHSCSSSCBTTTTBCCCC >sa_dssp EAEBEDDDCEBEBDDBBDECBEDEEADEBBEDEEDACDCBDEEDBEBEEDEEDADBEECDEEBCEDADDBBEDDEECCDDEEDEBEDE >ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECC >ss_conf 9856777873059999999998876999997589999999998755663015652145786779999999984147654544424319 >Consensus mxxcpxcgxxxkwexliexmliixnfxexxkdxxxflxxxxxfxfkcpxcgeefygxxlxxxeaxkvfellnxfxgxidxenxxvxlk >c2k5cA_ MAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPRREAEKVFELLNDFKGGIDWENKRVKLK >UniRef50_C6A445(1-88:110) Putative uncharacterized protein n=8 Tax=Thermococcaceae RepID=C6A445_THESM E=1e-33 s/c=1.62 id=56% cov=101% MSRCPLCGEVIKWEDLVEQMLVVDNFQELLKDKDSFLSVLNSFAFKCPKCGEEFYGNNLNQNEASKVFELLNEFNGSIDYENNKVRLK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1349 0 0 A 2 1000 * * * * * * * * * * * * * * 1000 * * * * 2 0 * * * * * * 1349 0 0 K 3 * * * * * * * * 1000 * * * * * 1000 * * * * * 3 0 * * * * * * 1349 0 0 C 4 * 0 * * * * * * * * * * * * * * * * * * 4 0 * * * * * * 1349 0 0 P 5 * * * * * * * * * * * * 0 * * * * * * * 5 0 * * * * * * 1349 0 0 I 6 * * * * * * * 1000 * 1000 * * * * * * * * * * 6 0 * * * * * * 1349 0 0 C 7 * 0 * * * * * * * * * * * * * * * * * * 7 0 * * * * * * 1349 0 0 G 8 * * * * * 0 * * * * * * * * * * * * * * 8 0 * * * * * * 1349 0 0 S 9 * * * 1000 * * * * * * * * * * * 1000 * * * * 9 0 * * * * * * 1349 0 0 P 10 * * * * * * * * * * * * 1000 * * * * 1000 * * 10 0 * * * * * * 1349 0 0 L 11 * * * * * * * 1000 * 1000 * * * * * * * * * * 11 0 * * * * * * 1349 0 0 K 12 * * * * * * * * 0 * * * * * * * * * * * 12 0 * * * * * * 1349 0 0 W 13 * * * * * * * * * * * * * * * * * * 0 * 13 0 * * * * * * 1349 0 0 E 14 * * * 0 * * * * * * * * * * * * * * * * 14 0 * * * * * * 1349 0 0 E 15 * * 1000 1000 * * * * * * * * * * * * * * * * 15 0 * * * * * * 1349 0 0 L 16 * * * * * * * * * 0 * * * * * * * * * * 16 0 * * * * * * 1349 0 0 I 17 * * * * * * * 1000 * * * * * * * * * 1000 * * 17 0 * * * * * * 1349 0 0 E 18 * * * 0 * * * * * * * * * * * * * * * * 18 0 * * * * * * 1349 0 0 E 19 * * * 1000 * * * * * * * * * 1000 * * * * * * 19 0 * * * * * * 1349 0 0 M 20 * * * * * * * * * * 0 * * * * * * * * * 20 0 * * * * * * 1349 0 0 L 21 * * * * * * * * * 0 * * * * * * * * * * 21 0 * * * * * * 1349 0 0 I 22 * * * * * * * 1000 * * * * * * * * * 1000 * * 22 0 * * * * * * 1349 0 0 I 23 * * * * * * * 1000 * * * * * * * * * 1000 * * 23 0 * * * * * * 1349 0 0 E 24 * * 1000 1000 * * * * * * * * * * * * * * * * 24 0 * * * * * * 1349 0 0 N 25 * * * * * * * * * * * 0 * * * * * * * * 25 0 * * * * * * 1349 0 0 F 26 * * * * 0 * * * * * * * * * * * * * * * 26 0 * * * * * * 1349 0 0 E 27 * * * 1000 * * * * * * * * * 1000 * * * * * * 27 0 * * * * * * 1349 0 0 E 28 * * * 0 * * * * * * * * * * * * * * * * 28 0 * * * * * * 1349 0 0 I 29 * * * * * * * 1000 * 1000 * * * * * * * * * * 29 0 * * * * * * 1349 0 0 V 30 * * * * * * * * * 1000 * * * * * * * 1000 * * 30 0 * * * * * * 1349 0 0 K 31 * * * * * * * * 0 * * * * * * * * * * * 31 0 * * * * * * 1349 0 0 D 32 * * 0 * * * * * * * * * * * * * * * * * 32 0 * * * * * * 1349 0 0 R 33 * * * * * * * * 1000 * * * * * 1000 * * * * * 33 0 * * * * * * 1349 0 0 E 34 * * 1000 1000 * * * * * * * * * * * * * * * * 34 0 * * * * * * 1349 0 0 R 35 * * * * * * * * * * * * * * 1000 1000 * * * * 35 0 * * * * * * 1349 0 0 F 36 * * * * 0 * * * * * * * * * * * * * * * 36 0 * * * * * * 1349 0 0 L 37 * * * * * * * * * 0 * * * * * * * * * * 37 0 * * * * * * 1349 0 0 A 38 1000 * * * * * * * * * * * * * * 1000 * * * * 38 0 * * * * * * 1349 0 0 Q 39 * * * * * * * * * * * * * 1000 * * * 1000 * * 39 0 * * * * * * 1349 0 0 V 40 * * * * * * * * * 1000 * * * * * * * 1000 * * 40 0 * * * * * * 1349 0 0 E 41 * * * 1000 * * * * * * * 1000 * * * * * * * * 41 0 * * * * * * 1349 0 0 E 42 * * * 1000 * * * * * * * * * * * 1000 * * * * 42 0 * * * * * * 1349 0 0 F 43 * * * * 0 * * * * * * * * * * * * * * * 43 0 * * * * * * 1349 0 0 V 44 1000 * * * * * * * * * * * * * * * * 1000 * * 44 0 * * * * * * 1349 0 0 F 45 * * * * 0 * * * * * * * * * * * * * * * 45 0 * * * * * * 1349 0 0 K 46 * * * * * * * * 0 * * * * * * * * * * * 46 0 * * * * * * 1349 0 0 C 47 * 0 * * * * * * * * * * * * * * * * * * 47 0 * * * * * * 1349 0 0 P 48 * * * * * * * * * * * * 0 * * * * * * * 48 0 * * * * * * 1349 0 0 V 49 * * * * * * * * 1000 * * * * * * * * 1000 * * 49 0 * * * * * * 1349 0 0 C 50 * 0 * * * * * * * * * * * * * * * * * * 50 0 * * * * * * 1349 0 0 G 51 * * * * * 0 * * * * * * * * * * * * * * 51 0 * * * * * * 1349 0 0 E 52 * * * 0 * * * * * * * * * * * * * * * * 52 0 * * * * * * 1349 0 0 E 53 * * * 0 * * * * * * * * * * * * * * * * 53 0 * * * * * * 1349 0 0 F 54 * * * * 0 * * * * * * * * * * * * * * * 54 0 * * * * * * 1349 0 0 Y 55 * * * * * * * * * * * * * * * * * * * 0 55 0 * * * * * * 1349 0 0 G 56 * * * * * 0 * * * * * * * * * * * * * * 56 0 * * * * * * 1349 0 0 K 57 * * * * * * * * 1000 * * 1000 * * * * * * * * 57 0 * * * * * * 1349 0 0 T 58 * * * * * * * * * * * 1000 * * * * 1000 * * * 58 0 * * * * * * 1349 0 0 L 59 * * * * * * * * * 0 * * * * * * * * * * 59 0 * * * * * * 1349 0 0 P 60 * * * * * * * * * * * 1000 1000 * * * * * * * 60 0 * * * * * * 1349 0 0 R 61 * * * * * * * * * * * * * 1000 1000 * * * * * 61 0 * * * * * * 1349 0 0 R 62 * * * * * * * * * * * 1000 * * 1000 * * * * * 62 0 * * * * * * 1349 0 0 E 63 * * * 0 * * * * * * * * * * * * * * * * 63 0 * * * * * * 1349 0 0 A 64 0 * * * * * * * * * * * * * * * * * * * 64 0 * * * * * * 1349 0 0 E 65 * * * 1000 * * * * * * * * * * * 1000 * * * * 65 0 * * * * * * 1349 0 0 K 66 * * * * * * * * 0 * * * * * * * * * * * 66 0 * * * * * * 1349 0 0 V 67 * * * * * * * * * * * * * * * * * 0 * * 67 0 * * * * * * 1349 0 0 F 68 * * * * 0 * * * * * * * * * * * * * * * 68 0 * * * * * * 1349 0 0 E 69 * * * 0 * * * * * * * * * * * * * * * * 69 0 * * * * * * 1349 0 0 L 70 * * * * * * * * * 0 * * * * * * * * * * 70 0 * * * * * * 1349 0 0 L 71 * * * * * * * * * 0 * * * * * * * * * * 71 0 * * * * * * 1349 0 0 N 72 * * * * * * * * * * * 0 * * * * * * * * 72 0 * * * * * * 1349 0 0 D 73 * * 1000 1000 * * * * * * * * * * * * * * * * 73 0 * * * * * * 1349 0 0 F 74 * * * * 0 * * * * * * * * * * * * * * * 74 0 * * * * * * 1349 0 0 K 75 * * * * * * * * 1000 * * 1000 * * * * * * * * 75 0 * * * * * * 1349 0 0 G 76 * * * * * 0 * * * * * * * * * * * * * * 76 0 * * * * * * 1349 0 0 G 77 * * * * * 1000 * * * * * * * * * 1000 * * * * 77 0 * * * * * * 1349 0 0 I 78 * * * * * * * 0 * * * * * * * * * * * * 78 0 * * * * * * 1349 0 0 D 79 * * 0 * * * * * * * * * * * * * * * * * 79 0 * * * * * * 1349 0 0 W 80 * * * * * * * * * * * * * * * * * * 1000 1000 80 0 * * * * * * 1349 0 0 E 81 * * * 0 * * * * * * * * * * * * * * * * 81 0 * * * * * * 1349 0 0 N 82 * * * * * * * * * * * 0 * * * * * * * * 82 0 * * * * * * 1349 0 0 K 83 * * * * * * * * 1000 * * 1000 * * * * * * * * 83 0 * * * * * * 1349 0 0 R 84 * * * * * * * * 1000 * * * * * 1000 * * * * * 84 0 * * * * * * 1349 0 0 V 85 * * * * * * * * * * * * * * * * * 0 * * 85 0 * * * * * * 1349 0 0 K 86 * * * * * * * * 1000 * * * * * 1000 * * * * * 86 0 * * * * * * 1349 0 0 L 87 * * * * * * * * * 0 * * * * * * * * * * 87 0 * * * * * * 1349 0 0 K 88 * * * * * * * * 0 * * * * * * * * * * * 88 0 * * 0 * * * 1349 0 0 //