HHsearch 1.5
NAME  c2k2uB_
FAM   
FILE  c2k2uB_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c2k2uB_.a3m 
DATE  Thu Jan 10 00:17:58 2013
LENG  35 match states, 35 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.2 
EVD   0.5244  4.7242 
SEQ
>ss_dssp
CCCCSCCCTTSSCCTHHHHHHHTTSCCCCCCSSCC
>sa_dssp
EEEEEEEEEEEEEEEDDEEDDEEEEEEEEEDEEEE
>ss_pred
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHCCC
>ss_conf
99787777623300134459988776425022069
>Consensus
gftphdxxxygaldxxdfefeqmftdaxgidxxgg
>c2k2uB_
GFTPHDSAPYGALDMADFEFEQMFTDALGIDEYGG
>UniRef50_P68335(460-490:490) Tegument protein VP16 n=9 Tax=Alphaherpesvirinae RepID=VP16_HHV23   E=6e-06 s/c=1.68 id=72% cov=91%
----HDPVSYGALDVDDFEFEQMFTDAMGIDDFGG
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
G 1    *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1000	0	0	

F 2    *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1000	0	0	

T 3    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	3
       0	*	*	*	*	*	*	1000	0	0	

P 4    *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1000	0	0	

H 5    *	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1196	0	0	

D 6    *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1196	0	0	

S 7    *	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	1000	*	*	*	*	7
       0	*	*	*	*	*	*	1196	0	0	

A 8    1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	8
       0	*	*	*	*	*	*	1196	0	0	

P 9    *	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	1000	*	*	*	*	9
       0	*	*	*	*	*	*	1196	0	0	

Y 10   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	10
       0	*	*	*	*	*	*	1196	0	0	

G 11   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1196	0	0	

A 12   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1196	0	0	

L 13   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1196	0	0	

D 14   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1196	0	0	

M 15   *	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	1000	*	*	15
       0	*	*	*	*	*	*	1196	0	0	

A 16   1000	*	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	16
       0	*	*	*	*	*	*	1196	0	0	

D 17   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	17
       0	*	*	*	*	*	*	1196	0	0	

F 18   *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	18
       0	*	*	*	*	*	*	1196	0	0	

E 19   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1196	0	0	

F 20   *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1196	0	0	

E 21   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1196	0	0	

Q 22   *	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1196	0	0	

M 23   *	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1196	0	0	

F 24   *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1196	0	0	

T 25   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	25
       0	*	*	*	*	*	*	1196	0	0	

D 26   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	26
       0	*	*	*	*	*	*	1196	0	0	

A 27   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1196	0	0	

L 28   *	*	*	*	*	*	*	*	*	1000	1000	*	*	*	*	*	*	*	*	*	28
       0	*	*	*	*	*	*	1196	0	0	

G 29   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	29
       0	*	*	*	*	*	*	1196	0	0	

I 30   *	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	30
       0	*	*	*	*	*	*	1196	0	0	

D 31   *	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	31
       0	*	*	*	*	*	*	1196	0	0	

E 32   *	*	1000	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	32
       0	*	*	*	*	*	*	1196	0	0	

Y 33   *	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1000	33
       0	*	*	*	*	*	*	1196	0	0	

G 34   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	34
       0	*	*	*	*	*	*	1196	0	0	

G 35   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	35
       0	*	*	0	*	*	*	1196	0	0	

//