HHsearch 1.5 NAME c2k1aA_ FAM FILE c2k1aA_ COM /bmm/www/servers/phyre/brandnew/HH/hhmake -i c2k1aA_.a3m DATE Thu Mar 11 12:56:50 2010 LENG 42 match states, 42 columns in multiple alignment FILT 26 out of 30 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.7 EVD 0.4735 2.3049 SEQ >ss_dssp CCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCC >sa_dssp EEEEEEDECEEEEEEDEECCEEEEDEEDECCEEECEEEEEEE >ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC >ss_conf 975435540699899999999999999999996214213797 >Consensus xxxexxxVpxWiIivsiixGlllLxxlvxxLwKxGFFKRxrp >c2k1aA_ GALEERAIPIWWVLVGVLGGLLLLTILVLAMWKVGFFKRNRP >UniRef50_UPI0000D56E64(930-968:998) PREDICTED: similar to integrin alpha-ps n=1 Tax=Tribolium castaneum RepID=UPI0000D56E64 E=0.0002 s/c=1.21 id=48% cov=95% --LVDKGVNIWIIIGSVIAGLVLLVIVVFALYKCGFFKRNR- >UniRef50_Q9W1M8(925-961:1000) Integrin alpha-PS5 n=1 Tax=Drosophila melanogaster RepID=ITA5_DROME E=0.0001 s/c=1.29 id=34% cov=90% ----ETPLPIWYIILSLIAGHLLLGAMTYILYKLRFFKRGK- >UniRef50_UPI0000E483DC(72-109:146) PREDICTED: similar to integrin alpha V subunit, partial n=1 Tax=Strongylocentrotus purpuratus RepID=UPI0000E483DC E=2e-07 s/c=1.51 id=39% cov=90% --VENQPVPKWVVAVSIAAGIVCLIVVILVMWKCGFFRR--- >UniRef50_B3RTH1(943-979:998) Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RTH1_TRIAD E=0.0002 s/c=1.26 id=34% cov=83% -------VPSYIYVLSIVGGLIFLAIIVFILYILGFFKRKQ- >UniRef50_UPI000180B3B0(1037-1072:1104) PREDICTED: similar to integrin alpha Hr2 n=1 Tax=Ciona intestinalis RepID=UPI000180B3B0 E=0.0008 s/c=1.24 id=41% cov=88% ---ESSTIEWWIIAIAVAAGVLFLLLIILLLWKCGFFKR--- >UniRef50_Q9GSF4(967-1004:1021) Integrin alpha chain n=1 Tax=Podocoryna carnea RepID=Q9GSF4_PODCA E=1e-07 s/c=1.52 id=31% cov=93% ---ESSTVEWWIIFICILVAILIIAVIVFIMYKKGFFKRKK- >UniRef50_UPI0001A2D033(937-969:989) UPI0001A2D033 related cluster n=4 Tax=Clupeocephala RepID=UPI0001A2D033 E=0.0006 s/c=1.37 id=38% cov=81% -------VRIFIIVSSLIVGLIIFGLLVLTLWKLGFFKRT-- >UniRef50_Q7QF51(1094-1132:1164) AGAP000307-PA (Fragment) n=1 Tax=Anopheles gambiae RepID=Q7QF51_ANOGA E=1e-08 s/c=1.56 id=32% cov=95% --IVAMDVPWWIILIAAITGLLVLIALTYLLYRCGFFRRKR- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 A 2 0 * * * * * * * * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 L 3 * * * * * * * 1924 * 1066 * * * * * * * 1949 * * 3 0 * * * * * * 2102 0 0 E 4 * * * 539 * * * * * * * * * 3262 * * * 2268 * * 4 0 * * * * * * 2645 0 0 E 5 3482 * 3924 1765 * * * * 2719 * * 3593 4030 3628 * 2527 * * * * 5 0 * * * * * * 2828 0 0 R 6 3719 * * 2930 * * * * 3004 * 3537 * * 3661 2956 2610 2249 * * * 6 0 * * * * * * 2833 0 0 A 7 4125 * 3717 1432 * 2323 * * * * * * 2719 * * * 2791 * * * 7 0 * * * * * * 2698 0 0 I 8 * * * * * * * 1918 * 3349 * * * * * * * 650 * * 8 0 * * * * * * 2848 0 0 P 9 3819 * * 3305 * * * * 4546 * * 5064 737 4812 4468 3746 * * * * 9 0 * * * * * * 2870 0 0 I 10 * * * * * * * 1832 4389 2091 4588 * * * * 4165 4532 3534 2253 * 10 0 * * * * * * 2870 0 0 W 11 * * * * 3527 4568 * * * * * * * * * * * * 292 4205 11 0 * * * * * * 2881 0 0 W 12 * * * * * * * 718 4506 5122 * * * * * * * 2733 3133 4184 12 0 * * * * * * 2881 0 0 V 13 * * * * * * * 537 * 3772 * * * * * * * 2446 * 4205 13 0 * * * * * * 2881 0 0 L 14 3195 * * * 4021 * * 1648 * 2786 * * 4799 * * * * 1602 * * 14 0 * * * * * * 2881 0 0 V 15 * * * * * 2800 * 2611 * 2107 * * * * * 4487 * 1265 * * 15 0 * * * * * * 2881 0 0 G 16 2158 4021 * * * 3762 * * * * * * * * * 642 * * * * 16 0 * * * * * * 2881 0 0 V 17 2705 * * * * * * 1432 * 2818 * * * * * * * 1581 * * 17 0 * * * * * * 2881 0 0 L 18 3195 3495 * * * * * 1488 * 2038 4543 * * * * * * 2652 * * 18 0 * * * * * * 2881 0 0 G 19 1082 * * * * 1931 * * * * * * * * * * 4424 2193 * * 19 0 * * * * * * 2881 0 0 G 20 3358 * * * * 148 * * * * * * * * * * * * * * 20 0 * * * * * * 2881 0 0 L 21 * * * * 4543 * 4184 1841 * 1138 4779 * * * * * 5187 3256 * * 21 0 * * * * * * 2881 0 0 L 22 * * * * 4543 * * 2998 * 631 * * * * * * 3824 3116 * * 22 0 * * * * * * 2881 0 0 L 23 3951 4446 * * 3585 * * 2236 * 1258 5344 * * * * * * 2726 * * 23 0 * * * * * * 2881 0 0 L 24 * * * * 3497 * * 4021 * 235 * * * * * * * * * * 24 0 * * * * * * 2881 0 0 T 25 1622 * * * * 3328 * 3435 * 2644 * * * * * 3003 3762 3004 * * 25 0 * * * * * * 2881 0 0 I 26 1699 * * * 4626 3570 * 2722 * 1698 * * * * * * * 3218 * * 26 0 * * * * * * 2881 0 0 L 27 4506 4543 * * * * * 2158 * 1130 3363 * * * * * * 2891 * * 27 0 * * * * * * 2881 0 0 V 28 4779 4597 * * * * * 1706 * * * * * * * 3679 2520 1460 * * 28 0 * * * * * * 2881 0 0 L 29 4568 * * * 1790 * * 4045 * 1886 * * * * * * 4635 * 4567 1971 29 0 * * * * * * 2881 0 0 A 30 2537 4567 * * * 4568 * 1414 * 2038 * * * * * * 3666 4446 * * 30 0 * * * * * * 2881 0 0 M 31 * * * * 4635 * * * * 361 2464 * * * * * * * * * 31 0 * * * * * * 2881 0 0 W 32 * * * * * * * * * * * * * * * * * * 710 1364 32 0 * * * * * * 2881 0 0 K 33 * * * * * * * 4205 153 * * * * * 4424 * * * * * 33 0 * * * * * * 2881 0 0 V 34 4567 1482 * * 4725 * * * 4021 1546 4635 * * * 4506 * * 3762 * * 34 0 * * * * * * 2881 0 0 G 35 * * * * * 82 * * * * * * * * 4184 * * * * * 35 0 * * * * * * 2881 0 0 F 36 * * * * 0 * * * * * * * * * * * * * * * 36 0 * * * * * * 2881 0 0 F 37 * * * * 0 * * * * * * * * * * * * * * * 37 0 * * * * * * 2881 0 0 K 38 * * * * * * * * 328 * * 4725 * * 3435 * 4970 4597 * * 38 0 * * * * * * 2881 0 0 R 39 * * * * * * * * * * * * * * 0 * * * * * 39 0 * * * * * * 2881 0 0 N 40 * * * * * 3882 * * 1240 * * 1756 * * 4657 3865 3260 * * * 40 0 * * * * * * 2765 0 0 R 41 * * * * * * * * 1649 * * * * 2940 860 * * * * * 41 0 * * * * * * 2700 0 0 P 42 * * * * * * * * * * * * 0 * * * * * * * 42 0 * * 0 * * * 1993 0 0 //