HHsearch 1.5 NAME c2jypA_ FAM FILE c2jypA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c2jypA_.a3m DATE Wed Jan 9 18:43:19 2013 LENG 36 match states, 36 columns in multiple alignment FILT 1 out of 5 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.0 EVD 0.4867 3.4863 SEQ >ss_dssp CCSSSTTTTTCCSSSTTTTTTTCTTCGGGTTTTSCC >sa_dssp EEEDEBDEEDCBBEAEDEBDEDDDEDBEDBCDDEEE >ss_pred CCCHHHCCHHHHEEEEEECCCHHHHHHHHHHHCCCC >ss_conf 953000501120133552571222025332200249 >Consensus trhsfrrpfhecalcysitdpgerqrcidmycsytn >c2jypA_ TRHSFRRPFHECALCYSITDPGERQRCIDMYCSYTN # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * * 0 * * * 1 0 * * * * * * 1000 0 0 R 2 * * * * * * * * * * * * * * 0 * * * * * 2 0 * * * * * * 1000 0 0 H 3 * * * * * * 0 * * * * * * * * * * * * * 3 0 * * * * * * 1000 0 0 S 4 * * * * * * * * * * * * * * * 0 * * * * 4 0 * * * * * * 1000 0 0 F 5 * * * * 0 * * * * * * * * * * * * * * * 5 0 * * * * * * 1000 0 0 R 6 * * * * * * * * * * * * * * 0 * * * * * 6 0 * * * * * * 1000 0 0 R 7 * * * * * * * * * * * * * * 0 * * * * * 7 0 * * * * * * 1000 0 0 P 8 * * * * * * * * * * * * 0 * * * * * * * 8 0 * * * * * * 1000 0 0 F 9 * * * * 0 * * * * * * * * * * * * * * * 9 0 * * * * * * 1000 0 0 H 10 * * * * * * 0 * * * * * * * * * * * * * 10 0 * * * * * * 1000 0 0 E 11 * * * 0 * * * * * * * * * * * * * * * * 11 0 * * * * * * 1000 0 0 C 12 * 0 * * * * * * * * * * * * * * * * * * 12 0 * * * * * * 1000 0 0 A 13 0 * * * * * * * * * * * * * * * * * * * 13 0 * * * * * * 1000 0 0 L 14 * * * * * * * * * 0 * * * * * * * * * * 14 0 * * * * * * 1000 0 0 C 15 * 0 * * * * * * * * * * * * * * * * * * 15 0 * * * * * * 1000 0 0 Y 16 * * * * * * * * * * * * * * * * * * * 0 16 0 * * * * * * 1000 0 0 S 17 * * * * * * * * * * * * * * * 0 * * * * 17 0 * * * * * * 1000 0 0 I 18 * * * * * * * 0 * * * * * * * * * * * * 18 0 * * * * * * 1000 0 0 T 19 * * * * * * * * * * * * * * * * 0 * * * 19 0 * * * * * * 1000 0 0 D 20 * * 0 * * * * * * * * * * * * * * * * * 20 0 * * * * * * 1000 0 0 P 21 * * * * * * * * * * * * 0 * * * * * * * 21 0 * * * * * * 1000 0 0 G 22 * * * * * 0 * * * * * * * * * * * * * * 22 0 * * * * * * 1000 0 0 E 23 * * * 0 * * * * * * * * * * * * * * * * 23 0 * * * * * * 1000 0 0 R 24 * * * * * * * * * * * * * * 0 * * * * * 24 0 * * * * * * 1000 0 0 Q 25 * * * * * * * * * * * * * 0 * * * * * * 25 0 * * * * * * 1000 0 0 R 26 * * * * * * * * * * * * * * 0 * * * * * 26 0 * * * * * * 1000 0 0 C 27 * 0 * * * * * * * * * * * * * * * * * * 27 0 * * * * * * 1000 0 0 I 28 * * * * * * * 0 * * * * * * * * * * * * 28 0 * * * * * * 1000 0 0 D 29 * * 0 * * * * * * * * * * * * * * * * * 29 0 * * * * * * 1000 0 0 M 30 * * * * * * * * * * 0 * * * * * * * * * 30 0 * * * * * * 1000 0 0 Y 31 * * * * * * * * * * * * * * * * * * * 0 31 0 * * * * * * 1000 0 0 C 32 * 0 * * * * * * * * * * * * * * * * * * 32 0 * * * * * * 1000 0 0 S 33 * * * * * * * * * * * * * * * 0 * * * * 33 0 * * * * * * 1000 0 0 Y 34 * * * * * * * * * * * * * * * * * * * 0 34 0 * * * * * * 1000 0 0 T 35 * * * * * * * * * * * * * * * * 0 * * * 35 0 * * * * * * 1000 0 0 N 36 * * * * * * * * * * * 0 * * * * * * * * 36 0 * * 0 * * * 1000 0 0 //