HHsearch 1.5
NAME  c2jpkA_
FAM   
FILE  c2jpkA_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c2jpkA_.a3m 
DATE  Wed Jan  9 19:54:38 2013
LENG  35 match states, 35 columns in multiple alignment
FILT  2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.3 
EVD   0.4854  3.2260 
SEQ
>ss_dssp
CCCCHHHHHHHHHHHHHHHTTTCTTTSCSTTGGGC
>sa_dssp
EEEDEEDEEDDDDEEDDEEBEECDEEDDEEDEEEE
>ss_pred
CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCC
>ss_conf
97642101115999999987544201662442159
>Consensus
kkwgwlxwxxpayxfixgxxkgxxkegnkxkwkni
>c2jpkA_
KKWGWLAWVDPAYEFIKGFGKGAIKEGNKDKWKNI
>UniRef50_Q9L9U5(29-59:59) Enterocin 1071B n=2 Tax=Enterococcus faecalis RepID=Q9L9U5_ENTFA   E=3e-05 s/c=1.60 id=59% cov=91%
----WLPWLQPAYDFVTGLAKGIGKEGNKNKWKNV
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
K 1    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1000	0	0	

K 2    *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	2
       0	*	*	*	*	*	*	1000	0	0	

W 3    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	3
       0	*	*	*	*	*	*	1000	0	0	

G 4    *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	4
       0	*	*	*	*	*	*	1000	0	0	

W 5    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	5
       0	*	*	*	*	*	*	1308	0	0	

L 6    *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1308	0	0	

A 7    1000	*	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	7
       0	*	*	*	*	*	*	1308	0	0	

W 8    *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	8
       0	*	*	*	*	*	*	1308	0	0	

V 9    *	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	1000	*	*	9
       0	*	*	*	*	*	*	1308	0	0	

D 10   *	*	1000	*	*	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	10
       0	*	*	*	*	*	*	1308	0	0	

P 11   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1308	0	0	

A 12   0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	12
       0	*	*	*	*	*	*	1308	0	0	

Y 13   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	13
       0	*	*	*	*	*	*	1308	0	0	

E 14   *	*	1000	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	14
       0	*	*	*	*	*	*	1308	0	0	

F 15   *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1308	0	0	

I 16   *	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	1000	*	*	16
       0	*	*	*	*	*	*	1308	0	0	

K 17   *	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	1000	*	*	*	17
       0	*	*	*	*	*	*	1308	0	0	

G 18   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	18
       0	*	*	*	*	*	*	1308	0	0	

F 19   *	*	*	*	1000	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1308	0	0	

G 20   1000	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1308	0	0	

K 21   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1308	0	0	

G 22   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1308	0	0	

A 23   1000	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1308	0	0	

I 24   *	*	*	*	*	1000	*	1000	*	*	*	*	*	*	*	*	*	*	*	*	24
       0	*	*	*	*	*	*	1308	0	0	

K 25   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	25
       0	*	*	*	*	*	*	1308	0	0	

E 26   *	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	26
       0	*	*	*	*	*	*	1308	0	0	

G 27   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	27
       0	*	*	*	*	*	*	1308	0	0	

N 28   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	28
       0	*	*	*	*	*	*	1308	0	0	

K 29   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	29
       0	*	*	*	*	*	*	1308	0	0	

D 30   *	*	1000	*	*	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	30
       0	*	*	*	*	*	*	1308	0	0	

K 31   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	31
       0	*	*	*	*	*	*	1308	0	0	

W 32   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	32
       0	*	*	*	*	*	*	1308	0	0	

K 33   *	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	33
       0	*	*	*	*	*	*	1308	0	0	

N 34   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	34
       0	*	*	*	*	*	*	1308	0	0	

I 35   *	*	*	*	*	*	*	1000	*	*	*	*	*	*	*	*	*	1000	*	*	35
       0	*	*	0	*	*	*	1308	0	0	

//